G782 (slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534)


Basic Information

Item Value
gene id G782
gene name slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4007840 ~ 4014287 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1152
aacaacacaaacatgTAAGTAACAATAGTTTGCTGTTTTGTCTTCCATTTTGTTCCATTTTATTGcatgataattaaaatgaaacatgtttaaaaaaccCACATGTAATCTGACCATCGAACCCTCACTTATCTAAAATAAGCATCCTATTCAAACACCATATTCATTTTCTTAACAATTTGTAAAGactcaagtaaaaaaataatacttattaaaaacatttagcagaGACTAAAGACTGAAGTCAGATTCTATTAATGCACTCGAGGTACGGTTTACATTATCTATTCATGCACCCCATAGAAATCAAACTCACGACCTTGGTGTTTCTATATCGCTTTGCTCAGCTGTTTAAGCTACAGGATTTTAAGAATCTGAACATACTTCTTGAAATTGAGtacattttatagaaatatttctCACAGTACAttacaatgtaaatattaattttggacATACCGCATAACAGGAATGACCCACATACATTTAACTGAGCTTTTGAGGGCTAGACAGAATCCATTCAATCTATTTTCCCTGTAGGACCTGTGTATTCATTTAACCATAAAGTGCCTTTCAGTTTTAAAAGCCTGCATTGTAACCTGCGCTGACCAGTGATCATTATGTTCACATTAACGCATCGCACTGCGTGTAACTAAGAACTTCATATCCAAAATGTGAACATCACACATAggtttataaaacatttttacattcacaaacagaaaaaaaatatatatacccACTGTAACTTCACTCAACCTCcaccacattttatttaacaaaatagaAGCAGATCAAATGTAGCAAAGCATAGAAATGTAACTCTGAGACAAACTGTTGGGAAAATGCACCAAATAATAGATAAGCCAGAATGTGGTACAGTCTTTCACAGTGGAGCGACAAATAATTACCCTTCCACGcatgatgagagagagagagcgagagcgagagagagagagagagagagagagagagagagaaggagatgCCTTGATGGACAGCCAGAACCGGTATAACAGATAAAATAGATCAGAAGGTCACCCTTCAATTTCGGTCGGTTGGGGGAAGAACGGATGCttgtttttttcgttttttttagttttgttttgtgtgtatgtgcagtGTGAGTCACAACACACATCTCTCTGAAGGCTCTGAATCTACATTAGAGTAAAACCATTGCAATATGACAGGAACCCCATTGGGACGTTCTGCTGGATTGCAATTCAACCGACTTTGTTTTGTGCAACCTAAATCAAATTGACAGGTAAGAGAGAAAAGCATCTCCCGGTGCCGATATTTTCCACACTTGCAACGAGGCAAGGCCATGAATAGGATTGTGGATGGAGTTTTCTTATTGTATTACTCAATAAACTCACACAATTAGGGCCAAGGAGAATAAAAAGGTAAGCTAGGAAGTCTAGATGGTACTCTGTCTATGGAAATGGACGGCTGGTTAccttattttagcttttaatcGTTCTTTATTTATGtcgttttttgttgtaaaataattacagtgaTACAAACGCAACCTCAAAAACATCAGCGGTGACATTTAAATGCTAGCGGTAAGATGCATGGCACTGCGCTCTACATCTCGTTtgtaaaaatggcattttggaAACAGCGTTCAACTCGTGTTCCTCACTACTGAATCTGATCCCGCCCTTCTCTGCGAGTATTAGCCATCACAGTGACACGCTTAGGCCTAGTTATGTTGATAAGGTGAATGCTGGTTCGCCTACACATACCGGTGAACTTCATCTCCCAGCATGGTTTCAAATGCTTGAGAGGCAACAGCGACATCTAGAGGCGGCTATTCCTTCTACGGCTGCTGTGATGACATCAGTCAAATGCACAGACATGCCATTCTGGTCTGCTTCtcctatatatatttacaccTTTTCATCCGCTTCATAGGACGAATTTCGAAGTAGCAAACGGCGTAATATTCCTTTTCTCGTATTTGGACAAAATAGATGGCTTTACAAAAGCTCACAATACTTACAGTGAATAATAGGCTTTTGTGAAGGAATACTTCAAcccctaaaaataataataataattaataacaataataatagtaataaataaaaataaaggcatcTTAGTCTATGTGCACTCTGTAGACGGTTCAAAATCGTCACGTACCAAAGCCCCCTTCGAACATCACctttcaaaaaggaaaaaaaaaagaagaaaaaaaaatcctccccTTCTGTCATCCTGGTACCCACACGCTGTATCCATCGACGCACAAGATCACGAACCACTGGAGCTACATTGAATTTTCGCAGCATAAGCACGTGAATCGTTCATGCTTATCCGCATCCCAAACATGTCAACAGTTGGCACACTAtaagataaacacattttacattcataaagGAGATGACTGGGCAGATACATGAGAAATCTGCACTCAAAAGAAGTATAAATTATCCCCATATCAACCAATCAACAATCAACTGATAAAACGTAAAGTACATGCATTTACATCTCCACCTTTTGGCCTGTCCACCTTCGAGAAAGAGAAATCAAACAGCAAATACAAATTCTAACTGACAAAAAATAGAAGAAATGGCACTTTTAATATAGtcatatatagttttatatttatatatatatatatatgtatatatatatatcgatgaCACGAAAGGAGGGTCGCGTTGGCTTCCTTGTTACTATGGTAATGGTTCCCAGTGTGTGTTGAGACCATGCGAATCATGCAGATATGTTACAGTCcgttatttacattacattcatgCGTTCGTGCACCGTTCCCACGTCCTCTTTTGAGCGTGTCTGCAGTCTGAGCtgggaggagaaagaaagagagagaggctctatacatatataacagTGGGGGCCCCATTGCAGTGTTTGATGGACGCTATACTCAACCGAAGCAACAAAAATAGGctattttatctctttttttcccacagaGGCGAGTCTGAGGTCTAGTGTTTGTGTGTCGCCCTCCATTGTCACCGCAACATACGAAACGCAGTTCGTCCGTTTGCTCGCTCCTGCTTCCATGAGCATCATTTGTCAGAGAGAGAGTGGGCACCACAGTCGTAACCTCTGTGTGGCCCATCCGCATGATAAGCTCCGCTGTGCCAGTAGGACGAGTCGCATACTGTCTGTAAGGAATTGATTTCTGACGCAGAAGAGTTGCCGTCTCTCCGCTTCGATCTCTTTCGATTGCGCAGGATAAAGACCAGCATTCCCACCACGGTGAAGGCAGACGTCACGAAAACCAAGAGTAGACCGGGCACGAGCACCGATATGGACACTCTGCTGGGCTCCAGGTAGGAGTTGGGCCGCGTCCCCGTGTCTGCCGGGAAGGTGCTGTTTTTGGACAGCGAGGTGGGGGAGATCTTCTCGTAGAGCTGAGGGCACATCAGATCGTTCCTGATCCGCCGGAAATCCCTCTTCCAGAACTGCTCGGGCGACTCGCACTTGAGGTCACTCACGATGACGTCCGCCCCAAGCTTGTCAGTCCACTGTTTGAAAGGAACGATGTTGCACGTGCAATCCCAGGGGTTGCCATGCAAATCGATCTGGATGATAGAGTTGAGCTGGTCTAGGACGCCTGGCACAGGGAGATAAGTGAAATAATTGTTGTGCAAGCTTATTTTAGACAAAGAAACCCCCAAGAATGCATCCACGGGCAGAGCTTTGAGCAGGTTGTTGTTGAGGAAGAGCACCCTCAAGTTGGGCATCGGGCTGAAGGTGCCCGGCATGATGAGCTGGATGTCATTATATTCCAAACTGAGATACTCCAGGTTCTGAAGCCCTGCGAACATCTCCGCCATTAACGTATCCAAGTAGTTCTTGTCCATGTAGAGCCACCTCAACTCGGTCAGGTTGTGGAAGGTGCCGTTTTCGATCATCTTGATGTTATTCCCCCCCAGATCGAGCAGGTTCAAACTGTGGTAGCCTCGGAGCTGATTCCTTCTGATGGTGTGAATGTTATTGTCACGCAGGTTCAACTCATGCGCGACCAGGGGTTTGGGTTTGAGATTGGCCACACTTTCTATCTTCTTGCCCTCACAGTTAACCCCGAGCCCTTGTCTGGTTCCAATCAGCTTACAATCACAAGACTGGGGGCACGTCGAATTAGCCGGTGGCTCTCTTTCAACGACACCAGTCGCCATGGCCGTAGGCTTGGTTTTCAGCTGCCAGTTCTCCTTGGCTTTGGAACGGCCCCTGTTATGGCCTCCCCCACCGCTGTGGGACTCCGTCACCCCGCTCGTTTTAGAGGGCGTGGGGCGGGGGCGACGATCGGGAGTCTCGTCTTGGGTGGGAGGCGCCACCAGACTGGAATCCATGCCGCTCTTTGAAGGGCACAGCTCCGACTCGGCCGTTTCGTTCAGGTCGTTACCTTGCAGCCGAGTGGGCGCCTCGCAAATGACCCTTCCAATGAGCACGTTCTGCGGGATGTTCTCTAGCCATTCCTTTAGGGAAACCAGGTCGCAGTTGCAGTCCCACGGGTTGTCCTCCAATAAAACCTCCACGATGCCAGGTATCTGCTCTAGAATCCCCTCGTAAGGCAACGTTTTTATGCGGTTCCCTCTCAGATCAAGGTGTGTTATGGGCACGTTCTGAAACACGTTGATGGGAAGGGCGCTAATAAGGTTGTCGTTTAAGATCAAAACTTCCAGCTTACTCAAGTCCCTGAACACGGATGGGTCGATGTCCCTCAGAAGGTTGAAGTCGGCTTGAAGGTACTCCAGGTCATCCAAGCCCAGAAAGGTGTTCTTTTTGAAAGATctgattttgttgttattgatgTGCAGCCGCTTGACGAGCTGCAGTCCCAGGAATGCACCGGGCACAATGTCGTGCAAGCCATTGTTCTCCAAATGCAAGCTCACGGCATTGTAAAAGTTAGCGAACTCGTTAGGGAACAGTCTGGACAAAGAATTCCCGTGAAGCAGGAGATGGTAAAACTGAGAGCTCGGACCTGTCAAATGGTGCAGGTTCGTGAGGCTCCTTTTCTCGCAGTCAATGTGCAAATCGCCTTCTATTGCGTTGCAGGAGCAGATCTGCTCCTTACAGACGTCCCTTGTAACATTCCCGATAGCTACACAAAGAGCCGCCTTCAGCAACACAATCCAAAGCAGCATTTTCAATACGACACAATCATCCCCGACATCAAGACATGAATACAATCAGCAAGAGGGCGAGAAATGAGATAAATCTCCAGTCTAAAAAAGCAGAGGACACTCTGTGATTATATCCATGCTCAGCTCGCTATGTCCAGATTGAGAAAAATCGACATCAAGAAGCCTTTTTTTCATCACCTCCCCATCGCATGCTCTCAAAACAATCTTAAAGCGTACAGAATGACATCTCCAACTCAATTATTTGGCTTTTCGGGCTCGCAAATCACTGACCTTGTGCATTTCTCACATATCCACGGCGCGGGAGCTGTTCTTTCTCCCGTGGTGCTGAAATCACACCGCGTACATCTCAATGCATCGCAGTAAGATTAATCCGAGATTCTTACATCTTTAGCATCCTTCCTCTGACTCCGACGGCGTCGCTTTACGCTTTTATATCACAAAGACGGTCGCTGAGAGATTCTGGACTTTTCAGCCCGGTGTTCACCAGCAGATCTAACACCCTCTGCTGAGCTGCGAAGGCAAAAATCCATCGGACGAGGGAATGCttgctcgctcgctcgctcgcacGGGGGAAAAAACAGTCCACACACAGGGCAAGCAAGTGTCGGAAATGTCCACAGAAATCGCCGTCGAAGGGTTTAGATTGCTTTCATTCCAGATCGCTTTTTCTCGTCTCTATCCCCTCCGACAGCTCTCGCGGAGCCGCTCCGTTTTCCCCATCCGAATGTCTTTAAAGCACACGGCATTTCCAGAGTCCCCGCAGACGATATTTCCGTTTCACgtaggaaaagaaaaagaaatgctcAAGTATTCCACAAAGCGCAGGTGTTGTTCGCGTGAaggttgtttctttttttccgccgtgagtgtgtgtgagtgtgtgtgtggagggggaACTGCAGTTGAATGCGGTAAAATAATTAACTACTCGACGTGCATGCAACAGTGCAGCCGGTGCGCTGAGCTTCTTCTATTACTGTCACAACAAACACTGCGTCAAGACTATAGGAACTATGCGCACATACGCTACGTCACAGCCCTTAAGACATGCGATGTCTtgaaaaataagtgcatttcAACAGGAACGCTGGGTATTCCCTTTTATATCACCCTTTACGgcttgattattattatttttttatgcaggcAGATCGACGCGTTAAATCTCAGACTATTAAAACAAGTCCGTATCGATCGAAACTCGCTGCATATATTACGTTTACGATTAAAGCGCGTCTCTgacttgacaaaaaaaagcctTTCCTCAAAAATCTGGTGCGTAAAACACGCAGATAGCGGGCTCTCGC

Function

symbol description
slitrk1 Is expressed in nervous system.

NR:

description
PREDICTED: SLIT and NTRK-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1152 True 6448 TUCP 0.38 1 4007840 4014287

Neighbor

gene id symbol gene type direction distance location
LOC122353624 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 coding downstream 306595 3695165 ~ 3701245 (-)
cep97 NA coding downstream 1268251 2732846 ~ 2739589 (-)
nfkbiz LOC107751657,LOC107575617 coding downstream 1275482 2726297 ~ 2732358 (-)
eed eed,LOC107751659,LOC107662672 coding downstream 1283920 2720655 ~ 2723920 (-)
hikeshi hikeshi,zgc:110091,LOC106574699 coding downstream 1287697 2717987 ~ 2720143 (-)
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding upstream 517502 4531789 ~ 4546466 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding upstream 555547 4569834 ~ 4574420 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding upstream 582793 4597080 ~ 4618627 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding upstream 659402 4673689 ~ 4739460 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding upstream 751012 4765299 ~ 4896900 (-)
G732 NA non-coding downstream 664347 3343091 ~ 3343493 (-)
G730 NA non-coding downstream 665887 3341562 ~ 3341953 (-)
G720 NA non-coding downstream 721631 3285956 ~ 3286209 (-)
G695 NA non-coding downstream 887043 3112270 ~ 3120797 (-)
G692 NA non-coding downstream 937771 3066811 ~ 3070069 (-)
G792 NA non-coding upstream 8080 4022367 ~ 4024242 (-)
G794 NA non-coding upstream 10419 4024706 ~ 4026047 (-)
G797 NA non-coding upstream 11818 4026105 ~ 4028108 (-)
G803 NA non-coding upstream 23451 4037738 ~ 4037970 (-)
LOC122346152 NA non-coding upstream 431772 4446059 ~ 4454180 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 723054 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 1318376 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 2402856 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 2776193 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 3259476 738137 ~ 748364 (-)
G820 NA other upstream 284023 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 941832 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 1829857 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 2097176 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 2206317 6220604 ~ 6226114 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_02118245_02120332 SLITRK1 coding CI01000299 null 2116861 ~ 2121858 (+)
rainbow trout (Oncorhynchus mykiss) G582590 LOC106575277 non-coding NC_048571.1 CM023225.2 19425382 ~ 19430874 (-)