G1642


Basic Information

Item Value
gene id G1642
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7125642 ~ 7170022 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2396
gtgttttaaaaagtgtaataaaatgaaGCCCAATttcttataatataaaatgagaaaagtgtaatttttaatgataatactattcattgtacaaaatattatttctgttttttaaatgatagaCTTTGTGGTTTAATTTCACTTCTGCAGTTCTTTCATAAACCCCTAGGACTTCACAAAGCCCTTCATATTCCTTCAGTTTACCCtcacaataaattaaatgaaagctATAAAACACAGGACAGCCACCGCAATAGAGCTGTTACCTGGAGGAGCCACTCTGTCCTGCCAGGTGGGTTTGTAATCGCTCAGGGTGAGAAGGAGAATCTGGATGGTGCCGATAAAGATCCCGGCCAGGCAGCCATAAAAGATGAGATAGAAGAGGAAGATTTTTgcACCAACTACCACCGGTGCGTCCTAGAAATTCCTTCTTCTCTGAATTCCATAAAAACTTCTTCCATCCTCCATCATCTTTATTTTGAGCGGGCATGGTGTACTGTAAGGTTTTGTTTATCCCCTTTGGCAGCGAATTCCCCTCGTGTCTCCTTTCTTGCCTCCTTTGGAACACTACACCCCTTCCCGGAGCACTAAGCCCACCGTGACATGGAGCCGTACCCGGCTCTCTCCAAGGTGCCCCGCGTAATATATCCAGCGGAGCGCCTGGGTCCCGCCCAC
>TU2397
aaaaatgaaagaaaaaaaaaaaaaaaaggaaaaaaatcaaagctACAGTAGCGGTTCCCTCCACATGTGAATGACACCGTAAAAAACCAAAAGCAAAATCTACATTCAGTGAAAACGAATCATTAAAAGAGAAGTACAATCCTCTCCCTACATTGTAGTGattttagggaaaaaaatagGTTTATTACCCACCTAATACACCTAAAAGATGCAAAGATAGAACATCAATACCCCCGAAAGGCAATGTTAAGAGGCCAGTGTATTTCCATTAAGTAACTATACATATATGTAGGCACATTTGACAAATGAAGCTGAATCACACACATGGCGTGGCTCGAAACAACCTACATATGCAACTACTGTGCACTTTCTAAATATAGGGAAATCACACGAGGCAGCAATACAATACAAGAGGGACGAAACAGTGCTGGCTACATCGGTAGAGGAAatgtaatttacagtaaaacaacatgCCCCTTTTGATCGTGGACACTTCTCATTCGgtaatagaataaatattttatgctatGGCTAATCCTCCAGGCGTTTGCATTCTAACCCTAGACTGAAAGCAGAAAGCTTGAAGTAAAGAGTACAGACAATGTTAGGTCCCACATGTGTAAGATGGTATGTTGTTTTAGactagtgtttttaaataatcttttcttttcttttttttttttcttaaacgaATCTCTCCTAAACTAAAATGGCCTCTTTCTGACATGAGACACTTGTACATTCAAAAAACATCCCCTCGGTTAAACACTGTGGAAGACCGGTGAGAAACTTCTCTCTGGTGCCTTTGTATCTCAGGTCAGAAGAGGGGCCTTAGTTAGCCTTTAAATAGGGAGAGAGCGGAGGTACTCTGTTCAGAGGTCATGAAGATTTGGACATGACACCGATTTTAACATCGAATCGTCCCTGGTAGCGATCCTTGTCgctgtaataaatgttttcccCGAACACTTTGCACTCCACGCGGATCTCCGTGTTCTGGGTGATGTTGACGAACTGGATGGCCACCAGGGGCTGCAGGTAGTTGTAGTGCAGGCGCTTCCCGTAGTAGGGGTAATACTGAAGAGGAAAGCCTTCGCCGATGCCGTAGTACTTCACTTCCCCGAGCTTACCTGCATCCTCTTCTTTCTGCAGGTGTTTCGGAGGAGACCAGAGAACATGTGCTGCCGGTTAGAAAAGCCTTACAAAGCAAAGACAAGTATTCAGTGAAGTGGTCGAATGATCGCTTACCTTGTTTGTGCAGTGGAGAGGAATCACGTTGGGCTGGACTTTGTACTTTGCCTCTTCTGGAATGCTTTCGTTTGACATTGGTGGCTAAAAGAAAGgatcagaaataataaataaataaaagtaaaaaccaATTAGACTTACATGCAACATGAtacatgtttatgtgtgtgtgtatatatatataacttgtg
>TU2398
gtgttttaaaaagtgtaataaaatgaaGCCCAATttcttataatataaaatgagaaaagtgtaatttttaatgataatactattcattgtacaaaatattatttctgttttttaaatgatagaCTTTGTGGTTTAATTTCACTTCTGCAGTTCTTTCATAAACCCCTAGGACTTCACAAAGCCCTTCATATTCCTTCAGTTTACCCtcacaataaattaaatgaaagctATAAAACACAGGACAGCCACCGCAATAGAGCTGTTACCTGGAGGAGCCACTCTGTCCTGCCAGGTGGGTTTGTAATCGCTCAGGGTGAGAAGGAGAATCTGGATGGTGCCGATAAAGATCCCGGCCAGGCAGCCATAAAAGATGAGATAGAAGAGGAAGATTTTTgcACCAACTACCACCGGTGCGTCCTAGAAATTCCTTCTTCTCTGAATTCCATAAAAACTTCTTCCATCCTCCATCATCTTTATTTTGAGCGGGCATGGTGTACTGTAAGGTTTTGTTTATCCCCTTTGGCAGCGAATTCCCCTCGTGTCTCCTTTCTTGCCTCCTTTGGAACACTACACCCCTTCCCGGAGCACTAAGCCCACCGTGACATGGAGCCGT
>TU2399
AGATAAtgtaaaatctcaaaaaaagacttttgattaaaacagcagaagatgtatagaataaaaaacagcacaacTTTAGAGTCTCAGCTTTATTTTGGTTAGTCTTTTCCAGTTCAGTTTCAACATGAGCTTGTGGGACTCGTGAAATTCGACATTTCTGATGTTTGACACTGATTGCGCACACCTACAAAACATCCCGATGGACAGGGTATTGCATTACTTCTGATCAAATCTAGAATAATCTTAATGGCTTTGGCATTATTAACATTCATGACGAGTTTCTGCAGAACATGAGCATGTGCAAGAACAGAATATTATAAGGTCACCACTTAATAAATATCAGAAACAGGGAACATTCGACCACGCTGCGTGACGTCTTCAATAAGAAGAACGACGACAAGGCaaggaagaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaga
>TU2400
AGATAAtgtaaaatctcaaaaaaagacttttgattaaaacagcagaagatgtatagaataaaaaacagcacaacTTTAGAGTCTCAGCTTTATTTTGGTTAGTCTTTTCCAGTTCAGTTTCAACATGAGCTTGTGGGACTCGTGAAATTCGACATTTCTGATGTTTGACACTGATTGCGCACACCTACAAAACATCCCGATGGACAGGGTATTGCATTACTTCTGATCAAATCTAGAATAATCTTAATGGCTTTGGCATTATTAACATTCATGACGAGTTTCTGCAGAACATGAGCATGTGCAAGAACAGAATATTATAAGGTCACCACTTAATAAATATCAGAAACAGGGAACATTCGACCACGCTGCGTGACGTCTTCAATAAGAAGAACGACGACAAGGCaaggaagaaaaaaaaaaaagaaaagaaaat
>TU2401
AGATAAtgtaaaatctcaaaaaaagacttttgattaaaacagcagaagatgtatagaataaaaaacagcacaacTTTAGAGTCTCAGCTTTATTTTGGTTAGTCTTTTCCAGTTCAGTTTCAACATGAGCTTGTGGGACTCGTGAAATTCGACATTTCTGATGTTTGACACTGATTGCGCACACCTACAAAACATCCCGATGGACAGGGTATTGCATTACTTCTGATCAAATCTAGAATAATCTTAATGGCTTTGGCATTATTAACATTCATGACGAGTTTCTGCAGAACATGAGCATGTGCAAGAACAGAATATTATAAGGTCACCACTTAATAAATATCAGAAACAGGGAACATTCGACCACGCTGCGTGACGTCTTCAATAAGAAGAACGACGACAAGGCaaggaagaaaaaggaaaaaaaaaaaaCCTCAAAAACATGACGTCAATGTTCAGTGCAACCTTAGATGAATCAGTCAGACCCAAAAGCCTAGGCCTTTCACCTTGAGTCACCTTGAACaatgatgcatttttaaccCTTTCCACGTGTATCACGTTAATAATGACAAGTATGCTAATTGAAAGACATGCTGATTGATTTCATGGCGAGCACAGACACAAAACAAGCGGCTTTTCAACAACCACGAACCTTTTAGCTTTTAGTTGTTGCTTTAATCATTTCATTCCGCGGaggaaaatgatttttattacattttattttagcaacgAGTCGAGCAAAAATCGAACCGATCGATAATCCGAAGCTGTCCTCGTTGACCTTTCGCTTCTTTATTAGCATCGGATTCACGCGCGGAGTTCGTTACGCGCTCATATCTTAATATTTGGAAAGAAAATCGAAAAGACGTAAAGCGTGCCTAAAGACTGAGTGGTCTCGACGAAACAGGTGGGTTACAGTGAACAGCACCAAATGAGCctacttgtttaaaaatacttcGGACTGCCAAAATGCATTCGTTAACGCGGCAGATCGTGGGTTGAGCGCGTATTTGGATGTATGAAAGTCCCCGAGACATTTGCTGCAAAGTCAAATCACACAGGTTGCATCGTGACCAGACTGGCAGTCCGTCTATCTGTACCTGCTGCTATAGAAACGGCGATGACAGGCATCACGGCTCTGTCCAGCGTTCTGAAACCGAGCGTTATACTGTCGATACGACATCTATAGGTTATACTTACACCAACTACCACCGGTGCGTCCTAGAAATTCCTTCTTCTCTGAATTCCATAAAAACTTCTTCCATCCTCCATCATCTTTATTTTGAGCGGGCATGGTGTACTGTAAGGTTTTGTTTATCCCCTTTGGCAGCGAATTCCCCTCGTGTCTCCTTTCTTGCCTCCTTTGGAACACTACACCCCTTCCCGGAGCACTAAGCCCACCGTGACATGGAGCCGT

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2396 False 675 lncRNA 0.67 2 7162261 7164721
TU2397 True 1439 lncRNA 0.38 2 7167577 7170022
TU2398 False 613 lncRNA 0.40 2 7162323 7164721
TU2399 False 447 lncRNA 0.45 2 7147982 7169421
TU2400 False 433 lncRNA 0.39 2 7125642 7169421
TU2401 False 1414 TUCP 0.34 2 7162323 7169421

Neighbor

gene id symbol gene type direction distance location
cnpy3 tnrc5,LOC107758855,LOC107590778,LOC107723163,LOC107665936,LOC107565448,LOC107692718 coding downstream 56065 7065125 ~ 7069577 (-)
LOC122351948 LOC107758836,LOC107692686,LOC107723162,LOC107665933,LOC107565093,LOC107590751,LOC557811 coding downstream 106606 7008598 ~ 7019036 (-)
LOC122351719 fga,LOC107692636,LOC107714149,LOC107565125,LOC107714150,LOC107758872 coding downstream 280186 6839928 ~ 6845456 (-)
rnf175 rnf175,LOC107714147,LOC107692639,LOC107564352,LOC107665971 coding downstream 291560 6828520 ~ 6834082 (-)
pgap6 tmem8a,LOC107714144,LOC107692641,LOC107564383,LOC107722960,LOC107590745,LOC107663323 coding downstream 333773 6782533 ~ 6791869 (-)
cfap221 cfap221,LOC107758838 coding upstream 17544 7187566 ~ 7196661 (-)
crfb15 LOC107692625,LOC107723179,LOC107758857 coding upstream 27511 7197533 ~ 7203087 (-)
knl1 casc5 coding upstream 129926 7299948 ~ 7311221 (-)
sdk1b sdk1b,LOC107692681,LOC107723157,LOC107665954,LOC107586817,LOC107758841,LOC107565061 coding upstream 148316 7318338 ~ 7485657 (-)
LOC122348313 LOC107557944,LOC107758859,LOC107577730,LOC107665949,LOC107576538 coding upstream 357063 7527085 ~ 7529413 (-)
G1553 NA non-coding downstream 121941 6982959 ~ 7003701 (-)
G1544 NA non-coding downstream 122654 6958686 ~ 7002988 (-)
G1532 NA non-coding downstream 265376 6859889 ~ 6860266 (-)
G1531 NA non-coding downstream 267581 6857795 ~ 6858061 (-)
G1529 NA non-coding downstream 269534 6855795 ~ 6856108 (-)
LOC122341717 NA non-coding upstream 127472 7297494 ~ 7298145 (-)
G1660 knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895 non-coding upstream 142230 7312252 ~ 7312898 (-)
G1663 NA non-coding upstream 145888 7315910 ~ 7316318 (-)
G1781 NA non-coding upstream 486056 7656078 ~ 7660532 (-)
G1809 LOC107723197,LOC107692608,LOC107564078 non-coding upstream 573473 7743495 ~ 7797446 (-)
LOC122342514 NA other downstream 581084 6533501 ~ 6544558 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other downstream 657388 6456044 ~ 6468254 (-)
gng13a NA other downstream 797301 6327023 ~ 6328341 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other downstream 850891 6267663 ~ 6274751 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other downstream 899528 6220604 ~ 6226114 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other upstream 33982 7204004 ~ 7295829 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other upstream 1322122 8492144 ~ 8500212 (-)
G1926 NA other upstream 1386018 8556040 ~ 8607795 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other upstream 1609190 8779212 ~ 8798355 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 3187159 10357181 ~ 10401686 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G103612 LOC103031172,LOC108439360,LOC103389586 non-coding NC_035908.1 CM008311.1 14287169 ~ 14290119 (-)