rnf175 (rnf175,LOC107714147,LOC107692639,LOC107564352,LOC107665971)


Basic Information

Item Value
gene id rnf175
gene name rnf175,LOC107714147,LOC107692639,LOC107564352,LOC107665971
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6828520 ~ 6834082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241193.1
GTGAATCTTTTTAGTCTCGTTTATGGACAGTTTCAGAAGATTCGTTGAAAAGATTTGATTCACAAGAACGATTCGTTCACAAATCATGGAACGCGACCAGAATGACTGCCGGTAGAAACGGAGCCATTAATAGATGACTGGAATCTAGACCGGTACTAATAATGGCTGGCTTGCAACCCCAGgACGATCCTTTAAAAATGTCCCACAGAGATACTTGGAAGATGCAGCACGAGAGGTTGCACGTGAAACACAGAGGTCATGAAGCCATGCATGCTGAGATGGTTCTGATTCTCATTGCCACGCTGGTGGTGGCTCAGATCGTCCTGGTTCAGTGGAAACAAAGACATTGCAGATCTTACAATATGGTCACGCTATTGCAGATGTGGGTGGTTCCTCTTTACTTTACCATTAAGCTTTACTGGTGGCGTTTCCTGTCCACATGGGGCATGTTCTCTGTCATCACCAGCTATGTCATATTTAGAGCGACACGCAAGCCACTATCCTGCAGAACGCCACGGATGGTGTATAAGTGGTTTCTCCTCATTTACAAGCTGAGCTACGCTGTGGGTGTGATTGGATACCTCGCCATAATGTTTACCATGTTTGGATTCAACGTTTTTTTCAGaattaaAGCAGAGGATTCAATGGATGTGGGTGTTATTATGCTTTTCTATGGTCTGTACTATGGGGTAATGGGACGTGACTTTGCTGAAATCTGCTCAGACTACATGGCATCCACAATAGGGTATTATAACATGGGTGGTATGCCGTCCCGAAACCTCAATAATGACGTGTGTGCCGTCTGTGGTCAGAAGATTTTTGTGGATGTAGATGAGGAAGGCATCATTGAGGACACCTACCAGCTCTCCTGTAACCACATATTTCACGAATTCTGTATTCGTGGCTGGTGCATCGTGGGAAAAAAGCAGACATGCCCGTACTGCAATGAGAAGGTGGACCTCAAAAGGATGATGAATAACCCCTGGGAGAGAACACATGTTTTATACGGACAACTTCTGGATTGGTTGAGGTACCTGGTCGCCTGGCAACCCATCATAATTGGAATTGTGCATGGAATAAATTTTTCACTTGGACTTGAATAAACACCTACAGTATTTGACTCCGTTTAAAACTGTGCATGGTTTGACCTTTggatatttatttgtaaatttgaCAAACTGTacactttataatgtaaatcaAACAGACGCTTTTGcgttttaatttattctaaattgACTCATTCAGACACACAACTCTTCAGAAGTGACCTACGCTGATACATCAAAGACATACAGAAGCCCATCTAGAGCTGCTGTCTATCACTCCTAATCAAAACTGTGCCTCATTTCGTCTGTCTATCTGTTTAACAATTTAGCATTGTTATGGTGTATTTTATGTAGGTGTGGATATCGACCGGTTATGTTTTCATTAGGGTGAAATGATGAGGAGCGCTCACCAaatcagtgtttattttgttttgttttacgtTGAGCTGGCCAAGTTGTTAAAACCCAGGAAGTGATCCGCtctgtggaaaataaaaccattttttgtgGCTACTGACGCAA

Function

symbol description
rnf175 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RNF175 (ring finger protein 175).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: RING finger protein 175-like, partial

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15698 RNF121_175; RING finger protein 121/175

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241193.1 True 1571 mRNA 0.42 9 6828520 6834082

Neighbor

gene id symbol gene type direction distance location
pgap6 tmem8a,LOC107714144,LOC107692641,LOC107564383,LOC107722960,LOC107590745,LOC107663323 coding downstream 36651 6782533 ~ 6791869 (-)
c1h7orf26 LOC107714132,LOC107722952,LOC107663321,LOC107692723,LOC107565504 coding downstream 57943 6766062 ~ 6770577 (-)
LOC122346519 mad1l1,LOC107564387,LOC107722950,LOC107590744,LOC107714125 coding downstream 66749 6714745 ~ 6761771 (-)
LOC122346986 ugt5b1,LOC107692647,LOC107714140,LOC107564400 coding downstream 234731 6589057 ~ 6593789 (-)
LOC122346971 ugt5b3,ugt5b4,LOC107564400,LOC107692647,LOC107714140 coding downstream 234804 6580204 ~ 6593716 (-)
LOC122351719 fga,LOC107692636,LOC107714149,LOC107565125,LOC107714150,LOC107758872 coding upstream 5846 6839928 ~ 6845456 (-)
LOC122351948 LOC107758836,LOC107692686,LOC107723162,LOC107665933,LOC107565093,LOC107590751,LOC557811 coding upstream 174516 7008598 ~ 7019036 (-)
cnpy3 tnrc5,LOC107758855,LOC107590778,LOC107723163,LOC107665936,LOC107565448,LOC107692718 coding upstream 231043 7065125 ~ 7069577 (-)
zgc:174945 NA coding upstream 300309 7134391 ~ 7135608 (-)
LOC122344706 LOC107565429,LOC107590752,LOC107692683 coding upstream 301678 7135760 ~ 7138480 (-)
G1519 NA non-coding downstream 25765 6802294 ~ 6802755 (-)
LOC122347249 NA non-coding downstream 338327 6487644 ~ 6490193 (-)
G1398 NA non-coding downstream 414939 6413382 ~ 6413581 (-)
G1394 NA non-coding downstream 438883 6389420 ~ 6389637 (-)
G1288 NA non-coding downstream 609931 6218244 ~ 6218589 (-)
G1528 NA non-coding upstream 19992 6854074 ~ 6854374 (-)
G1529 NA non-coding upstream 21713 6855795 ~ 6856108 (-)
G1531 NA non-coding upstream 23713 6857795 ~ 6858061 (-)
G1532 NA non-coding upstream 25807 6859889 ~ 6860266 (-)
G1544 NA non-coding upstream 124604 6958686 ~ 7002988 (-)
LOC122342514 NA other downstream 283962 6533501 ~ 6544558 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other downstream 360266 6456044 ~ 6468254 (-)
gng13a NA other downstream 500179 6327023 ~ 6328341 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other downstream 553769 6267663 ~ 6274751 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other downstream 602406 6220604 ~ 6226114 (-)
trpc5a trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 other upstream 237507 7071589 ~ 7134282 (-)
G1642 NA other upstream 291560 7125642 ~ 7170022 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other upstream 369922 7204004 ~ 7295829 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other upstream 1658062 8492144 ~ 8500212 (-)
G1926 NA other upstream 1721958 8556040 ~ 8607795 (-)

Expression


Co-expression Network