grk1a (grk1,grk1a,LOC107751068,LOC107694475,LOC107748333)


Basic Information

Item Value
gene id grk1a
gene name grk1,grk1a,LOC107751068,LOC107694475,LOC107748333
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2442044 ~ 2448598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246791.1
ATGGACATCGGTGGCCTGACCACGGTGGTGGCCAACTCGGCATACATCTCGGCCCGTGGCAGTTTCGACGGCACGGCCAACCCGGCGGCCAACCGAGACAAGAAGTACCATGCCAAACTCAAGCTGCCCCACATCACGGTGTGCGAAGGTCTGAGAGAAACTCTGGATCTGCAGTTCAAGAGCATCTGCGTGGAGCAACCCATCGGCAAGAGACTCTTTCAAGAGTTTCTGGAAACCACCAACGAGTATAAGGGCCCTTGTCGCCTTTGGAAGGACGTTGAGGCGTACGACACCGCCGAGGATAAAGACCGAGCTCAGAAAGCTGCCAAAATCCTCCAGCGCTACATGGAGCCTTCGGCCAAGCACTTCTGCCCCTTTTTACCCGAGAACGACATCACCAAGGTGAAGGAGCGGCACGAGGAGGCGGCGGACGACCTGTTTGTGCAGATCCTGCTCAGTGTTTTCGACTTCCTCAAAGAGGTTCCCTTCACCTTCTATCTAGAGACCATGTATTTTAAGCGGTTCCTCCAGTGGAAGTGGCTGGAGATGCAGCCCGTAGGCGAGGACTGGTTCCTGGACTTCCGTGTTCTGGGTAAGGGTGGATTCGGAGAAGTGTCCGCCTGTCAGATGAGGGCCACGGGGAAGCTGTACGCCTGCAAGAAGCTCAACAAGAAGAGGCTGAAGAAAAGGAAAGGCTATGAGGGCGCCATGGTGGAGAAACGGATCCTGGCTCGAGTTCACAGTAGATTCATCGTGACGCTGGCTTACGCCTTCCAGACCAAAACAGAGCTGTGTCTGGTGATGACCATCATGAACGGAGGAGACCTGAgGTACCACATCTATAACGTGGATGAGAATAACCCAGGGTTTTCTGAAGCCAGAGCGTGTTATTATGCTGCTCAGATCATTCAAGGCCTGGAGCATCTTCACCAGAAGAGAATCATCTACAGAGACCTGAAACCAGAAAACGTTCTGCTAGATAATGAAGGTCATGTCCGTATCTCTGACCTCGGGCTGGCTTTGGAGCTCGCAGATGACCAGCTCAAAACCAAAGGATACGCTGGAACTCCAGggttCATGGCCCCGGAGCTGCTCAAGGGTGAAGAATATGATTACTCAGTAGATTACTTCACTCTCGGGGTCACGCTGTACGAGTTCATCGCTGCTAAAGGACCCTTCAGGACTCGAGGAGAGAAGGTGGAGAATAAAGAGGTGAAGAAACGGATCCTGAACGACCCGGTGACCTACCCAGAGACCTTCAGTGAGAAGGCCAAGTCCATCTGTGAGGGTCTGCTGGCTAAAGAAGTGGACAAGAGACTGGGCTTCAAGAACGGCTCGTGTGACGAGCTGCGAGCGCATCCCTTCTTCAGCGAAATCAACTGGAGGAAACTCGACGCCGGGATTCTGCCTCCTCCGTTCGTTCCCGACTCAAAGACGGTCTACGCCAAGAACCTGGACGACGTGGGCGCGTTCTCCACGGTGAAGGGCGTCTGTCTGGAGGACGACGACAAGACGTTCTTCGATGAGTTCGCGTCAGGAAACATCTCCATCCCCTGGCAGGAGGAGATGATCGAGACGGGCATCTACGGAGAGCTGAACGTGTGGGGCCCGAACGGCACGGTGCCCAACGACCTGCGCCGAGAGTCCATCCTGGAGCAGCCGCCCAAGTCCTCCACCTGCTGCGTCTCGTAACACCACCCTGAACTCTGGGCTTCAGCCGCTTCACCAGCACCACACCTGTCATGTTCACCCGAGAGCTGAATAAACCCTCTCTCTAGTGATGTCTGGTTTGTGATCGGACGGTATCTGTCTCAGATACAGCTATTAGAAactctggaatctgagggagccaaaaaattgagaaaatcacctttaaattcgcccaaattaagttcttagccgTGCATATTACTCATTTACGACATATCTTTATAGAGCATGATCTCTACTTgatatcttaatgatttttggcatgtaTACGGTGTATTGTTGTCTGTTTCCAGAAATGATTCTAGGAGCTCAGGGTGAAGCGTGTTTATTAGTGATTATTGATCTTATTAATAAAGAGTTTATTGAGCAGCCAGCGTTCTGTTCAAGCACTTTAGCGTTTAGGCTTTAAAACAGAGCTGAATGAGACAGAATATCTAGGGATGAGGAAAGAATGAAGAGCCAAATGCTTTGCAGTCTTTCTTTTGACATCCATAAAGCTCAGTCGGTAATAACGAAGTAAAATGCGGAAAAGTATTTAGGATTTTTGTCTGTTTCCAGTCAAAACATTCGACAATTCTTAAATTAATATGCAGTCATTAGATAAGCAAAATGATGCAAGATTT

Function

symbol description
grk1a Enables rhodopsin kinase activity. Predicted to be involved in protein phosphorylation and regulation of signal transduction. Predicted to act upstream of or within several processes, including phosphorylation; regulation of rhodopsin mediated signaling pathway; and visual perception. Predicted to be active in cytoplasm. Is expressed in epiphysis; eye; retinal photoreceptor layer; and retinal rod cell. Human ortholog(s) of this gene implicated in Oguchi disease-2 and night blindness. Orthologous to human GRK1 (G protein-coupled receptor kinase 1).
grk1 Enables rhodopsin kinase activity. Involved in protein autophosphorylation and regulation of rhodopsin mediated signaling pathway. Predicted to be located in photoreceptor outer segment. Predicted to be active in cytoplasm. Implicated in Oguchi disease-2 and night blindness.

NR:

description
rhodopsin kinase

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0050254 rhodopsin kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246791.1 True 2333 mRNA 0.50 7 2442044 2448598

Neighbor

gene id symbol gene type direction distance location
cenpe LOC107751066,LOC107573438,LOC107577987,LOC107654461 coding downstream 1145 2420476 ~ 2440899 (-)
LOC122342255 LOC107748337,LOC107665801,LOC107573435,LOC107694467 coding downstream 22373 2406814 ~ 2419671 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822,LOC107748328 coding downstream 112030 2310255 ~ 2330014 (-)
blzf1 blzf1 coding downstream 155925 2281935 ~ 2286119 (-)
txnl4b txnl4b coding downstream 165691 2274373 ~ 2276353 (-)
tfdp1b tfdp1,LOC107694476,LOC107751069,LOC107748334 coding upstream 1673 2450271 ~ 2458808 (-)
tmco3 tmco3,LOC107577076,LOC107748345,LOC107571984,LOC107577957,LOC103375438 coding upstream 11092 2459690 ~ 2470466 (-)
lamp1a LOC107694471,LOC107751063,LOC107571985,LOC107574978 coding upstream 40871 2489469 ~ 2498691 (-)
cul4a cul4a,LOC102780633 coding upstream 51284 2499882 ~ 2511330 (-)
prozb NA coding upstream 70125 2518723 ~ 2523318 (-)
G617 NA non-coding downstream 62103 2378431 ~ 2379941 (-)
G563 NA non-coding downstream 70293 2369634 ~ 2371751 (-)
G614 NA non-coding downstream 81712 2349200 ~ 2360332 (-)
LOC122349938 NA non-coding downstream 99755 2334342 ~ 2342289 (-)
G559 ercc5 non-coding downstream 148527 2292924 ~ 2293517 (-)
G640 NA non-coding upstream 25724 2474322 ~ 2510689 (-)
G647 NA non-coding upstream 67056 2515654 ~ 2516175 (-)
LOC122351916 NA non-coding upstream 100326 2548924 ~ 2552261 (-)
G638 NA non-coding upstream 107645 2556243 ~ 2558864 (-)
G653 creg1,LOC107751059,LOC107739160,LOC107654633,LOC107551109,LOC107694464 non-coding upstream 112757 2561355 ~ 2561966 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 837060 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1210397 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1693680 738137 ~ 748364 (-)
G67 NA other downstream 2005919 435808 ~ 436125 (-)
G20 NA other downstream 2254959 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 240167 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 687910 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1559242 4007840 ~ 4014287 (-)
G820 NA other upstream 1849712 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2507521 4956119 ~ 4960210 (-)

Expression


Co-expression Network