mrrf (mrrf,LOC107686422,LOC107597620,LOC107713327,LOC107595542,LOC107685133)


Basic Information

Item Value
gene id mrrf
gene name mrrf,LOC107686422,LOC107597620,LOC107713327,LOC107595542,LOC107685133
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 919056 ~ 934066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250267.1
GGAGAATGACGTTGACAACCGGTTCTGATGACGCAAAACACTGAAACGCGTGACACGCGCCCTTGAGCCGCTCGTGTTGTCAAAAAGAGGGACTGTACTACAAGCCATGCCTGCTAAGACACATTTTTCTACATGAGGAAATTGTGTGAGCCCAGACATGGCACTGAGTCCCCTCGCCCTCCTGCGGCCGGTTCTGTGCAGACTTCTGCCCCCTCTGCTGACCAGGAGAGCCCCCTCTCTGCCCCACGCCGGCCGCCCCGCGCTCCTGCAGAGTTACGTCCGTCCTTATGCCACAAAGAAGAGTAAAGCGAAAGCAAAAGGGCAGACGGCTAAAGTGAACATCAATGTGGCTTTGGTGAAGGATATTATCAGCCTGGAGGAGGTGAAGGAGGACATGGATGCCGTCCTGACTGCTCTGAAAGAAGATTTCAGCCGCAGCCTTAGCATCCGGACGTCAGCAGGTGCACTGGACAACATTACAGTCGCCACAAAGGATGGCAAATTTCCGCTCAACCAGCTGGGCCAGATATCCATGAAGTCTCCTCAGCTACTTGTGGTCAACATGACTAGCTTCCCAGAGgcCACAGCAGCCGTCACCCGTGCCTTACAAGACAGCAGCATGGGACTCAACCCGGAGGTGGAGGGCACCATCATCAGGGTGCCGGTTCCCAAGGTGACTCGAGAACACCGGGAGAATCTGGTGAAGCTGGCCAAGCAGCTCAGTAACAAGGCCAAGGATTCGCTGAGGAAAGTACGGAGCGACGCCATCACGCTGGTCAAGAAGACCAAAGAGGGGGTCTCTGAAGACACCGTTCACCTGATAGAGAAACAGATTCATCAAATGGCAGACGGTTACGTGACAGACATCGACAAACAGCTGGCCACTAAAAGCAAGGAGCTCCTCGGGTGACCTTCACCAGGAACAGAAGTCCCTCTCTTCTGGACGCTGTTTGCCTGTTTTTCTCCTCCGTAAACAAATGTTGGCGTGGCACGCCAGTGGTTCTTGCTGCTCCTTGTGTTCACGTCTCCAAACAAACACAGGCAGGACGAATGAAGTTTTAATGAGATTTGGGGTACTCCTCCTAATCAAAGCGATGCCACAGACGGGGTGTTTATGTAAAAGGCTCGGCGCTGAATGTAAACGCTTTAGAAGGAGAGCTCAGAGCTGCACGCTGCCAACATTTGTTTCACATTCACGACATCGGCCTGTCATTATTTTCATCTACATGATCAGATCTGGCCGTgtaaactgaataaaatgctTCACTTGTT

Function

symbol description
mrrf Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in translation. Predicted to be active in mitochondrion. Is expressed in eye; immature eye; midbrain; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human MRRF (mitochondrial ribosome recycling factor).

NR:

description
ribosome-recycling factor, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K02838 frr, MRRF, RRF; ribosome recycling factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250267.1 True 1272 mRNA 0.53 7 919056 934066

Neighbor

gene id symbol gene type direction distance location
anxa3b anxa3b,LOC107686424,LOC107597622,LOC107713328,LOC107595539,LOC107685135 coding downstream 10883 903052 ~ 908173 (-)
LOC122352985 LOC107744083,LOC107597627,LOC107713333,LOC107685138,LOC107595562 coding downstream 56283 848025 ~ 862773 (-)
arl15b arl15b,LOC107595536,LOC107713334,LOC107686429,LOC107744085,LOC108433533,LOC107597630 coding downstream 76045 809052 ~ 843011 (-)
LOC122352659 mocs2,LOC107713337,LOC107744090 coding downstream 125261 792323 ~ 793795 (-)
LOC122352658 mocs2,LOC107685191,LOC107597632,LOC107595575,LOC107744090 coding downstream 126712 790272 ~ 792344 (-)
morn5 LOC107597617,LOC107685130,LOC107595543 coding upstream 25539 959605 ~ 969638 (-)
LOC122353188 strbp,LOC107744073,LOC107686417,LOC107713322,LOC107685126 coding upstream 183039 1117105 ~ 1201918 (-)
dbh dbh,LOC107744238,LOC107658656,LOC107685164,LOC107713263,LOC107597665 coding upstream 454405 1388471 ~ 1405296 (-)
exd3 LOC107658665,LOC107685114,LOC107595558,LOC107713313 coding upstream 559529 1493595 ~ 1532658 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding upstream 611394 1545460 ~ 1550935 (-)
G73803 NA non-coding downstream 35575 881676 ~ 883481 (-)
G73799 NA non-coding downstream 45156 873064 ~ 873900 (-)
G73709 NA non-coding downstream 114102 804742 ~ 804954 (-)
G73704 NA non-coding downstream 122874 795960 ~ 796182 (-)
G73661 NA non-coding downstream 153404 763883 ~ 765652 (-)
G73823 NA non-coding upstream 37142 971208 ~ 971820 (-)
G73843 NA non-coding upstream 101723 1035789 ~ 1036204 (-)
G73844 NA non-coding upstream 102913 1036979 ~ 1040944 (-)
G73826 NA non-coding upstream 123393 1057459 ~ 1058488 (-)
G73861 NA non-coding upstream 176901 1110967 ~ 1112319 (-)
si:dkeyp-41f9.4 NA other downstream 31044 885156 ~ 888012 (-)
G73687 mocs2,LOC107685191,LOC107597632,LOC107595575,LOC107744090,LOC107713337 other downstream 125332 789423 ~ 793724 (-)
G73662 NA other downstream 152710 693448 ~ 766346 (-)
megf10 megf10,LOC107565847,LOC107673753,LOC107705845,LOC107572185 other downstream 522436 359804 ~ 396620 (-)
LOC122353100 golph3,LOC107595534,LOC107685144,LOC107713339,LOC107686434,LOC107552603,LOC107681169,LOC107746803 other downstream 827735 40690 ~ 91321 (-)
G74058 NA other upstream 511257 1445323 ~ 1448886 (-)
G74031 NA other upstream 532685 1466751 ~ 1473878 (-)
nrarpa nrarpa,nrarp other upstream 549333 1483399 ~ 1488008 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other upstream 840157 1774223 ~ 1846902 (-)
LOC122352692 NA other upstream 1260019 2194085 ~ 2197429 (-)

Expression


Co-expression Network