XLOC_006600 (rgs17)


Basic Information

Item Value
gene id XLOC_006600
gene name rgs17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23728176 ~ 23756700 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012749
CTGGCTCGCTCGGTGCTGAAGTTGGGCGGATGGACGGAAAACACCGCTGATGGAGATAAAACGGCAGCATGCAATCTCAACGCGTGATACCCCCGATATCCGCATAAACACGTGTAAAGACACCCTTTTAGAAGACTGACATCTAGAACAAAAGGGATGTCTTATCCTGGATCATTTAGCCCTTGACTCAAGGAAAGGGTGTGCCTGCAGATACCAGGTGTTTGAAACCTACCTCCACCCTCTTCCTGCGTTCTCCATCAGGCATGATAAGAGAAGATACAAGAGGCCGCAATTTATTTTCCAGCACTCTGCCCGTCTCAACATTTGCCATTAGAATCATGATTTTCTTACCTGATCTTCGGATGAATCGCTGCTAATTTGCATGCCTCAGAGTGTGAGTGGAGTTGAAATGAGGAAAAGGCAGCAGGGACGCATTGAAGGACCCCCACAGGCGCCTGGTCACCCAAGGCCCAACACCTGCTGCCTGTGCTGGTGTGGATGCTGCAAATGCCTCTGGAATGAAGACAGAAGGGAACGTTCAGAGAGGCAAACGTGTACAAAGATGGATAGCATAGAAGCAACAGAGGAACTGCATCCCACACTGGATGAGGTGATTGCCTGGTCCCGGAGCTTTGAGATGATGATGCGTTCTCCAGAGGGCCGGGATGTTTTCCGGGAGTTCCTGAGGTCTGAGTACAGCGAAGAAAACCTGCTGTTCTGGATTGCCTGTGAGGATATGAAGAAAGAAACCAATCCATCAGTTGTCGAAGAAAAAGCCAGGATCATTTATGAAGACTATGTCTCCATTCTTTCACCAAAAGAGGTCAGCTTGGATTCACGGGTGAGGGAAGGCATCAACCAAAGCTTGGCAGAACCCAGCAGTACCATGTATGAGGAGGCCCAGCTCCAGATCTACACCCTCATGCACAGAGACTCCTTCCCTCGATTTCTCAACTCATCTGTTTACAGGGATCTCCTAAACAGCAAGAGGGCCTGCTTAGACACCTAGGTTTCAGCAAGAACATTTGAGACAAAAAAGCCCCAAGGTGCCACTTTCAAAAGGTGTGATGTTTCTTATTTCAAGAGTGAGTAGTTAAGCAATTCTGAGCATCCACTAGTGACCCTGAAGTTCAGTTCTGTTTAAGTGCCAATATGAGCTGCTCAGGCAACTGtgacacagaaaaa

Function

symbol description
rgs17 Is expressed in cranial ganglion; neurons; pectoral fin; and retinal ganglion cell layer. Orthologous to human RGS17 (regulator of G protein signaling 17).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-229 Is expressed in cranial ganglion; neurons; pectoral fin; and retinal ganglion cell layer. Orthologous to human RGS17 (regulator of G protein signaling 17).

Ensembl:

ensembl_id ENSDARG00000039435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012749 True 1185 mRNA 0.48 6 23728176 23756700

Neighbor

gene id symbol gene type direction distance location
XLOC_006599 map3k21 coding downstream 61597 23634817 ~ 23666579 (-)
XLOC_006598 prim2 coding downstream 115807 23488282 ~ 23612369 (-)
XLOC_006597 NA coding downstream 316545 23408029 ~ 23411631 (-)
XLOC_006596 si:dkey-103j14.5 coding downstream 457600 23233956 ~ 23270576 (-)
XLOC_006595 NA coding downstream 510358 23212759 ~ 23217818 (-)
XLOC_006601 phactr2 coding upstream 162780 23919480 ~ 23956361 (-)
XLOC_006602 AL772289.1 coding upstream 204592 23961292 ~ 23961406 (-)
XLOC_006603 cog2 coding upstream 239370 23996070 ~ 24018916 (-)
XLOC_006604 galnt2 coding upstream 311877 24068577 ~ 24218795 (-)
XLOC_006605 CR762497.2 coding upstream 370363 24127063 ~ 24127179 (-)
XLOC_006471 BX537274.2 misc downstream 13463271 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22901951 825904 ~ 826225 (-)
XLOC_006585 BX530068.1 non-coding downstream 880692 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 943743 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 1533008 22191361 ~ 22195168 (-)
XLOC_006607 CR762497.1 non-coding upstream 526970 24283670 ~ 24286390 (-)
XLOC_006611 NA non-coding upstream 590289 24346989 ~ 24351543 (-)
XLOC_006616 NA non-coding upstream 816386 24573086 ~ 24574746 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location