brk1 (brk1,BRK1,LOC106565571)


Basic Information

Item Value
gene id brk1
gene name brk1,BRK1,LOC106565571
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8875288 ~ 8878988 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118474
AGTTTGAGTGCTAACAGTCACACATCAGCACAAACAGTTATGCAAATGTTAATATAGATAAAAGGCATAAACAGCGTTATCCTCTGACTGTAGGTCGATCCGTTATGGGGGCGCCGCTCCTTCCTCTCGCAGTCAGCGGCTATCGCTAACGCTAATGCTAACGCTAACTAGCTCACGATGGCCGGACAGGAGGATCCCGTGCAAAGGGAAATTCATCAAGACTGGGCGAACCGCGAATACATCGAAGTGATAACCAGCAGCATTAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCCTGCAGGTCCCGTTTAGCCACTTTGAACGAAAAGCTTACTGCTTTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTCACAAAAGGGGAAACCTTGACTTAGACGTTGCTCTGGGTTGACGCCGAAAGGGAAGATGATGGCTACGAACACTCAATTCCtgtctttttcatttactttaactATTCAAACAAAGTTTCTGTTGGTTGGCTGTGGTAGATCAGTTAATTTCCGCACGGGACCATTGTGATGATGTCTTTGCTGTAAGCAGATATGTGTTCGCCTCATTTCATGCCCGATTATGGCTGAGGTTATACTGTATCTggtcctttattttttttgatctGTCAGGCAACCTGTTACTGTCTCTGTGGTGCTTGATCATGCAAACAGACCAGTGTCGTATATATTGTTCTGATCTGCTATGAAACAACTGTTGACTCTCCATGCAATATATTAACGGTCATGcaaacataaatttaaaatactttggATAAACCAACATTATGccttgtttttttggtttttttaaattaatagctAATAATTGTTAGAATTTTGATTTGCCCTCCTGTGTTTTATGCGTCTGCCCTCTtgttaaattacaaaaagttgtttaaaatacatCCCTGCCTGCTGTACATTTATCACGCAACAAACATCTGCAGAGAAAAATGCCAGTTGGAGGTGGGTGGAAAGCACTAAAGTGCCAATCagactgtttttaaaagtgtttagtGCTTTTCTGTATTTACACAATTTTATGTCTTAGTGTCTgttattaagatgtttttgtggttaaacattaaataaaaaaactaaaccattTAAA
>TU118475
TCGCTAACGCTAATGCTAACGCTAACTAGCTCACGATGGCCGGACAGGAGGATCCCGTGCAAAGGGAAATTCATCAAGACTGGGCGAACCGCGAATACATCGAAGTGATAACCAGCAGCATTAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCCTGCAGGTCCCGTTTAGCCACTTTGAACGAAAAGCTTACTGCTTTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTCACAAAAGGGGAAACCTTGACTTAGACGTTGCTCTGGGTTGACGCCGAAAGGGAAGATGATGGCTACGAACACTCAATTCCtgtctttttcatttactttaactATTCAAACAAAGTTTCTGTTGGTTGGCTGTGGTAGATCAGTTAATTTCCGCACGGGACCATTGTGATGATGTCTTTGCTGTAAGCAGATATGTGTTCGCCTCATTTCATGCCCGATTATGGCTGAGGTTATACTGTATCTggtcctttattttttttgatctGTCAGGCAACCTGTTACTGTCTCTGTGGTGCTTGATCATGCAAACAGACCAGTGTCGTATATATTGTTCTGATCTGCTATGAAACAACTGTTGACTCTCCATGCAATATATTAACGGTCATGcaaacataaatttaaaatactttggATAAACCAACATTATGccttgtttttttggtttttttaaattaatagctAATAATTGTTAGAATTTTGATTTGCCCTCCTGTGTTTTATGCGTCTGCCCTCTtgttaaattacaaaaagttgtttaaaatacatCCCTGCCTGCTGTACATTTATCACGCAACAAACATCTGCAGAGAAAAATGCCAGTTGGAGGTGGGTGGAAAGCACTAAAGTGCCAATCagactgtttttaaaagtgtttagtGCTTTTCTGTATTTACACAATTTTATGTCTTAGTGTCTgttattaagatgtttttgtggttaaacattaaataaaaaaactaaaccattTAAA
>TU118476
attcagTCTGATAAAtagatgttattaaaaaaatacaaattgaaaatgaaaactgtagATCAATAGCAAAATTTCTTAATTAATGCATATATGTTAGAAAACTGACCATATGCCATTTAGTATGAAaggattattaatattaattcctAGCGCAGAAATAAGCTAATTTGCACAAGCAGTTATTGAGAATGACATGCATATACTGTGTTGCTATAAACGGTGCTTTACAAAAAGACAAGTAAACAGCCTTCCAGGTAGCTCATATTTTCTCAGTGAAAGCCGAAAAGAAGTACATCTTATGAATCGTCGAGGGCATTAAAGCTACGGTGTTAACTGAAGTCCTCGTCCCACTCAATCTCAGGTATCATGTCTAGGAGGAAGGAACGTTCCTCCTCATCCCAGTGACCCGCACTCCCCTCTTTCCGTGGTCTCGGTTTTTACTTCGCGGGAAGCTACCGTAGACCCTGTTCAGTTCATTTTCAAACTCCAGCTTTGCCACGAGATCCTCCGAGGTCTGTGCATCTGAAAACAGAGGAGGGCATCGGTTCAAAACAGGCGGGTCTCGTGTCTGAAACGATTCTGATGACGATCAAACTGACCGAGGAGCCCACGTACATCTTGCGGTTCTGTGCAGCGCCGAATGTCTTCGTTCCTATATATAGAAAATACCCTCGCTGTCAGCGACAGGCGTGATAACCAGGCCATCTGCAGCACATTTATACCGCgtacgcacaaaaaaaaaaaaaaaaaaacgccttcAATCTGGCCTCTCCGTGCGGTGGTCAAATACATACGTGCCATCCTGTGGTGTTCTGGCCGGGCTGCAGTTTGGAGACGATGAGGATAAATTAGGAAGCTCATCCGCTGCCTGATCCAAAGCGGCAGCGAGGCTTCGTCTACTGTTTAGAAATTTGCTTGACATTGCACCgttgatttaaaacaattaagcaCAATATGTTACACAATAACAGCTCATGCTGCTACGTTGCCAGACAATTCCGACGGCGACCTCTCTACAACAAAGGTCAAAaggtcaaaatattttaatacgaTAATGCCACGGTTTTTGGACACGGAGCTGTTCAATTCGGCCGCTAAATAACTAGAAGAATGCGTTGCAGTAAACGGTGTCCCCGCTACAAACCAATGCGTTTGTAATCACCACAACACAACGTTATAAGAAATTACAGAAATAAGAAACAGCAGTTTGCGAAAACAACTGGTGGTGGGTGACACCGGAAGTCTCGCCGAAAAGTTTTGTTGcttaatatgttaaaaaaaatgtggataTGAAAGTAGGCTAAGCCAGAACGGGTGGCAATAGTTTGAGTGCTAACAGTCACACATCAGCACAAACAGTTATGCAAATGTTAATATAGATAAAAGGCATAAACAGCGTTATCCTCTGACTGTAGGTCGATCCGTTATGGTATGATCGCGCGCAAGGAAAATAATGTCTGTTAATAACGTGCTTCagaatgttattattttttgtttgtatatatttttcgtTGCATCCATATACGATcatcaaacaatgcaaaatgcaagagatggaaaataaaacattttacagggAGATTTCAGTCGAGTCGTAAAACAGCGTGTATATATCGCATTAGTATTTTCGATTTCTACGATGTATCTACTCACTTTTtactcatttcatttttatttcaaatcgCACATTGCGCTTCATTTCAATTCATCTCTCCGTTCGTTTCCCCGTAGATCACACTAGTATGTAATAAacggtgtgttttgtgtttttccatcagGGGGCGCCGCTCCTTCCTCTCGCAGTCAGCGGCTATCGCTAACGCTAATGCTAACGCTAACTAGCTCACGATGGCCGGACAGGAGGATCCCGTGCAAAGGGAAATTCATCAAGACTGGGCGAACCGCGAATACATCGAAGTGATAACCAGCAGCATTAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCCTGCAGGTCCCGTTTAGCCACTTTGAACGAAAAGCTTACTGCTTTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTCACAAAAGGGGAAACCTTGACTTAGACGTTGCTCTGGGTTGACGCCGAAAGGGAAGATGATGGCTACGAACACTCAATTCCtgtctttttcatttactttaactATTCAAACAAAGTTTCTGTTGGTTGGCTGTGGTAGATCAGTTAATTTCCGCACGGGACCATTGTGATGATGTCTTTGCTGTAAGCAGATATGTGTTCGCCTCATTTCATGCCCGATTATGGCTGAGGTTATACTGTATCTggtcctttattttttttgatctGTCAGGCAACCTGTTACTGTCTCTGTGGTGCTTGATCATGCAAACAGACCAGTGTCGTATATATTGTTCTGATCTGCTATGAAACAACTGTTGACTCTCCATGCAATATATTAACGGTCATGcaaacataaatttaaaatactttggATAAACCAACATTATGccttgtttttttggtttttttaaattaatagctAATAATTGTTAGAATTTTGATTTGCCCTCCTGTGTTTTATGCGTCTGCCCTCTtgttaaattacaaaaagttgtttaaaatacatCCCTGCCTGCTGTACATTTATCACGCAACAAACATCTGCAGAGAAAAATGCCAGTTGGAGGTGGGTGGAAAGCACTAAAGTGCCAATCagactgtttttaaaagtgtttagtGCTTTTCTGTATTTACACAATTTTATGTCTTAGTGTCTgttattaagatgtttttgtggttaaacattaaataaaaaaactaaaccattTAAA
>XM_043252646.1
GCTAACGCTAACTAGCTCACGATGGCCGGACAGGAGGATCCCGTGCAAAGGGAAATTCATCAAGACTGGGCGAACCGCGAATACATCGAAGTGATAACCAGCAGCATTAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCCTGCAGGTCCCGTTTAGCCACTTTGAACGAAAAGCTTACTGCTTTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTCACAAAAGGGGAAACCTTGACTTAGACGTTGCTCTGGGTTGACGCCGAAAGGGAAGATGATGGCTACGAACACTCAATTCCtgtctttttcatttactttaactATTCAAACAAAGTTTCTGTTGGTTGGCTGTGGTAGATCAGTTAATTTCCGCACGGGACCATTGTGATGATGTCTTTGCTGTAAGCAGATATGTGTTCGCCTCATTTCATGCCCGATTATGGCTGAGGTTATACTGTATCTggtcctttattttttttgatctGTCAGGCAACCTGTTACTGTCTCTGTGGTGCTTGATCATGCAAACAGACCAGTGTCGTATATATTGTTCTGATCTGCTATGAAACAACTGTTGACTCTCCATGCAATATATTAACGGTCATGcaaacataaatttaaaatactttggATAAACCAACATTATGccttgtttttttggtttttttaaattaatagctAATAATTGTTAGAATTTTGATTTGCCCTCCTGTGTTTTATGCGTCTGCCCTCTtgttaaattacaaaaagttgtttaaaatacatCCCTGCCTGCTGTACATTTATCACGCAACAAACATCTGCAGAGAAAAATGCCAGTTGGAGGTGGGTGGAAAGCACTAAAGTGCCAATCagactgtttttaaaagtgtttagtGCTTTTCTGTATTTACACAATTTTATGTCTTAGTGTCTgttattaagatgtttttgtggttaaacattaaataaaaaaactaaaccattTAAA

Function

symbol description
brk1 Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex).

NR:

description
PREDICTED: protein BRICK1 isoform X1

GO:

id name namespace
GO:0048870 cell motility biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001701 in utero embryonic development biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118474 False 1132 lncRNA 0.40 4 8876610 8878988
TU118475 False 990 lncRNA 0.39 3 8877101 8878988
TU118476 True 2803 lncRNA 0.40 3 8875288 8878988
XM_043252646.1 False 976 mRNA 0.39 3 8877115 8878988

Neighbor

gene id symbol gene type direction distance location
gpx1a gpx1a,LOC107577558,LOC107685977,LOC107718196 coding upstream 587 8872791 ~ 8874701 (+)
rrp9 rrp9,LOC107659541 coding upstream 71997 8797976 ~ 8803291 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding upstream 89228 8779094 ~ 8786060 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding upstream 96725 8758785 ~ 8778563 (+)
psma5 psma5 coding upstream 117481 8753056 ~ 8757807 (+)
bhlhe40 bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081 coding downstream 118869 8997857 ~ 9000630 (+)
arl8bb LOC107573080,LOC105934196,LOC107715779,LOC107659529,LOC107095653,LOC107577661,LOC107685974 coding downstream 125092 9004080 ~ 9009237 (+)
sema3fb LOC107715794,LOC107659533,LOC107575741,LOC107685972,LOC107572222 coding downstream 205653 9084641 ~ 9141929 (+)
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding downstream 382952 9261940 ~ 9266699 (+)
dnah1 dnah1 coding downstream 564830 9443818 ~ 9474222 (+)
LOC122354296 NA non-coding upstream 51107 8823084 ~ 8824181 (+)
G80047 NA non-coding upstream 178028 8578811 ~ 8697260 (+)
G80042 NA non-coding upstream 212806 8555431 ~ 8662482 (+)
G80039 NA non-coding upstream 218874 8549785 ~ 8656414 (+)
G80031 NA non-coding upstream 234220 8508653 ~ 8641068 (+)
G80120 NA non-coding downstream 62096 8941084 ~ 8941521 (+)
G80119 NA non-coding downstream 108638 8987626 ~ 9030946 (+)
LOC122354434 NA non-coding downstream 133772 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 372806 9251794 ~ 9254355 (+)
G80282 NA non-coding downstream 437928 9316916 ~ 9318241 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other upstream 56009 8818390 ~ 8819279 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 271004 8602187 ~ 8604284 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 592387 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 724719 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 1133847 7727787 ~ 7741441 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 595 8879583 ~ 8881656 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 12462 8891450 ~ 8979241 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 543962 9422950 ~ 9425302 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other downstream 642810 9521798 ~ 9540121 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 1587634 10466622 ~ 10471187 (+)

Expression


Co-expression Network