setmar (setmar,LOC107686011,LOC107718240,LOC107659535)


Basic Information

Item Value
gene id setmar
gene name setmar,LOC107686011,LOC107718240,LOC107659535
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8879583 ~ 8881656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118515
TGCGTGAATACATCGATATTTACAACAAGCCACGCATTAGTAATGTCCACTTTTACATCCAAATCAGAcagaaaactatatatatattaaaaaaaacacgatGCGATCCTACGGCCGAGATCTGAGTGGCGGGCTCGAGAATGTTCCTGTTTTGATTGAGAGCAGCGTTCCCAAAGAGGCTTTTTCCAACTTTCAGTATGTGCCAGATAATACACAAGGACCAGGCTGTGACCTCGACCCCAGTGCGGTGACCCTCCCAGGCTGCTCGTGTGGTGCCGGGTCCTGCCTGCCCGACCGCTGTCCCTGTCTGAGGTTCGGCCAGGCGTATGACGGCGCGGGACGTCTGAATCCCCCGCCAGAGGACGGCGGCTACAGCAGGCCTGTATTCGAGTGCAATGCCTTGTGCGTCTGCAGCGAGTCCTGCCAGAGCCGTGTGGTTCAAAAGGGGGTGGAGGTTCAGCTGGGTGTTTTCAGCACCGAGGACAGGGGCCTGGGGGTGGAGGCTCTGGAGCGCCTCTCTTGTGGCCGGTTTGTGTGCGAGTACGCCGGGGAAGTGATCGGGAGCCACGAGGCCCGTCGCCGCCAGCTCTCCCAGACTCCCCTGGATATGAACTACATCATTGCTGTGCGGGAGCACAGTGGAGGGGACAGGGTCACCCGGACCTTCGTGGACCCCGTGAATGTGGGCAATGTGGGGAGGTTCATCAACCACTCCTGCCAGCCCAACCTGCTCATGGTGCCTGTCCGAGTGCACTCACTAGTGCCCAGACTCGCTCTGTTCGCAAATCGTGATATAGAAAGGGATGAAGAGCTGACTTTTGACTATGCAGGTGGACAGAGGGATAAAGCAGAGACGGGGACACGCACGGGGCCTGATGCTGATGAAACACCAGGGAGAAA
>XM_043252645.1
AACGACATGGACTTTTAGTTTGCATCGACTTCGAGCGTTGAACCATTTCCGCTTCCGTTTGGAGTTCTTGCGTGAATACATCGATATTTACAACAAGCCACGCATTAGTAATGTCCACTTTTACATCCAAATCAGAcagaaaactatatatatattaaaaaaaacacgatGCGATCCTACGGCCGAGATCTGAGTGGCGGGCTCGAGAATGTTCCTGTTTTGATTGAGAGCAGCGTTCCCAAAGAGGCTTTTTCCAACTTTCAGTATGTGCCAGATAATACACAAGGACCAGGCTGTGACCTCGACCCCAGTGCGGTGACCCTCCCAGGCTGCTCGTGTGGTGCCGGGTCCTGCCTGCCCGACCGCTGTCCCTGTCTGAGGTTCGGCCAGGCGTATGACGGCGCGGGACGTCTGAATCCCCCGCCAGAGGACGGCGGCTACAGCAGGCCTGTATTCGAGTGCAATGCCTTGTGCGTCTGCAGCGAGTCCTGCCAGAGCCGTGTGGTTCAAAAGGGGGTGGAGGTTCAGCTGGGTGTTTTCAGCACCGAGGACAGGGGCCTGGGGGTGGAGGCTCTGGAGCGCCTCTCTTGTGGCCGGTTTGTGTGCGAGTACGCCGGGGAAGTGATCGGGAGCCACGAGGCCCGTCGCCGCCAGCTCTCCCAGACTCCCCTGGATATGAACTACATCATTGCTGTGCGGGAGCACAGTGGAGGGGACAGGGTCACCCGGACCTTCGTGGACCCCGTGAATGTGGGCAATGTGGGGAGGTTCATCAACCACTCCTGCCAGCCCAACCTGCTCATGGTGCCTGTCCGAGTGCACTCACTAGTGCCCAGACTCGCTCTGTTCGCAAATCGTGATATAGAAAGGGATGAAGAGCTGACTTTTGACTATGCAGGTGGACAGAGGGATAAAGCAGAGACGGGGACACGCACGGGGCCTGATGCTGATGAAACACCAGGGAGAAAAGCCTGTCACTGTGGGGCTGCAAACTGCACAGGGTTTTTACCATTAGATATGTCAGTTCTGCACTGAATGTTGAAGTATATGATGTGCTCTAATGAGTTGGGGTTCTGAATGTTTTGTAGAACTgttagaaatgtttattaaaataataaacgttCAAAAGTCTTTATATTCAAATATCA

Function

symbol description
setmar Predicted to enable histone-lysine N-methyltransferase activity and zinc ion binding activity. Predicted to act upstream of or within histone lysine methylation. Predicted to be located in nucleus. Orthologous to human SETMAR (SET domain and mariner transposase fusion gene).

NR:

description
histone-lysine N-methyltransferase SETMAR-like

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11433 SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR

RNA

RNA id representative length rna type GC content exon number start site end site
TU118515 False 900 TUCP 0.57 2 8879651 8881476
XM_043252645.1 True 1148 mRNA 0.53 2 8879583 8881656

Neighbor

gene id symbol gene type direction distance location
gpx1a gpx1a,LOC107577558,LOC107685977,LOC107718196 coding upstream 4882 8872791 ~ 8874701 (+)
rrp9 rrp9,LOC107659541 coding upstream 76292 8797976 ~ 8803291 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding upstream 93523 8779094 ~ 8786060 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding upstream 101020 8758785 ~ 8778563 (+)
psma5 psma5 coding upstream 121776 8753056 ~ 8757807 (+)
bhlhe40 bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081 coding downstream 116201 8997857 ~ 9000630 (+)
arl8bb LOC107573080,LOC105934196,LOC107715779,LOC107659529,LOC107095653,LOC107577661,LOC107685974 coding downstream 122424 9004080 ~ 9009237 (+)
sema3fb LOC107715794,LOC107659533,LOC107575741,LOC107685972,LOC107572222 coding downstream 202985 9084641 ~ 9141929 (+)
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding downstream 380284 9261940 ~ 9266699 (+)
dnah1 dnah1 coding downstream 562162 9443818 ~ 9474222 (+)
LOC122354296 NA non-coding upstream 55402 8823084 ~ 8824181 (+)
G80047 NA non-coding upstream 182323 8578811 ~ 8697260 (+)
G80042 NA non-coding upstream 217101 8555431 ~ 8662482 (+)
G80039 NA non-coding upstream 223169 8549785 ~ 8656414 (+)
G80120 NA non-coding downstream 59428 8941084 ~ 8941521 (+)
G80119 NA non-coding downstream 105970 8987626 ~ 9030946 (+)
LOC122354434 NA non-coding downstream 131104 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 370138 9251794 ~ 9254355 (+)
G80282 NA non-coding downstream 435260 9316916 ~ 9318241 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 595 8875288 ~ 8878988 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other upstream 60304 8818390 ~ 8819279 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 275299 8602187 ~ 8604284 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 596682 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 729014 8075419 ~ 8150569 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 9794 8891450 ~ 8979241 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 541294 9422950 ~ 9425302 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other downstream 640142 9521798 ~ 9540121 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 1584966 10466622 ~ 10471187 (+)
G80638 NA other downstream 1759476 10641132 ~ 10661970 (+)

Expression


Co-expression Network