LOC122353576 (krt93,LOC107753853,LOC107674539,LOC107718879,LOC107563541,LOC107680517,LOC107753855,LOC107680518,LOC107562075)


Basic Information

Item Value
gene id LOC122353576
gene name krt93,LOC107753853,LOC107674539,LOC107718879,LOC107563541,LOC107680517,LOC107753855,LOC107680518,LOC107562075
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15446171 ~ 15449037 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251375.1
catacactctcccacacacacccTACCCTCCCTCACTCACCCACAAAGTCCAGGAGCCGCCCTGGATCTGCATCCCTATAAGAGGTCAGAGCTGGGCTCATAGGTGCCATCCTCGTCTGGACAACTCTAACGGTTTCCTCTCTGGGTTCATCTCATCTCTGCATCCATCCACCATGTCTGTTCGCATTACGTCCACCAAAGGACCCAAGACCGTGACTTCTAAGTCTATTATCACCAAGAGTCGTGGTGGTTCCACGGTCTTTCCGCAGAAAGCCTACAGCGTGTATGGAGGAAGTTTGGGTGGAGGCACCCGCGTCTCTTCCTCCTCCCTTCAGTCCAGAATCGGAGGATACGGCGGAGGATATGGTTTTGGTGGAGGGCACGGTGGAGGTTTTGGTGGCGGATACGGTGGAGCTTTTGGTGGAGGATATGGAGCAGGCATAATGCCTGGAGGCTGCGTTGTAAATGACTTCCAGCTGAATGAGAAGGCCACCATGCAGAACCTGAACGACCGTCTGGCGACCTACCTGGAGAAGGTGCGCTCGCTGGAGGCTGCCAATGCCATCCTGGAGAGGCAGATCCGCGAATACTATGAGAAGAAAGGGCCGATCGCACAGAGGGACTACAGCCCCTACTGGAACACCATCAAGGACCTAAAAGACAAGATTAAGAACGCTACCATCAACAACGCCAACATCCTCCTGCAGATCGACAACTCTAAACTGGCTGCCGATGACTTCAGAATCAAATATGAGCATGAGGTGGTGATGCGTCAGTGTGTGGAGGCCGACATCGCCAACCTGCGCCGCTTGCTGGACCAGACAAACCTGGCAAGGGCCGACCTGGAGATGCAGATCAAGGGTCTGGAGGAAGAGCTAGCATTCATGAAGAAGAACCACCAGGAGGAGCTGGCTGCACTGAGGTCACAGCTGACAGGCACAGTGAACGTAGAGGTTGATGCTGCTCCTCAGCAAGATCTGACCAAGGTTATGGAAGAGATTCGTAATCATTACGAGAACATCATCCAGAAACACCGCAGGGAACAGGAGGCCTGGTTCAAAGACAAGaCTGCAGGGTTGAACAAAGAGGTGGCCATCAACACAGAGACCATACAAACGTCCAGATCACAGGTCACAGAGCTGAGAAACACCTTGCAGAGTCTGGAGATCGAGCTGCAGTCTCAACTCAGCATGAAAGCGGCACTGGAGAACTCGCTGGTAGAAACAGAGGCTAGATACAGCGCTATGCTAGCAGGCTACCAGAACCAAATCAACATGCTGGAAGCCGAGCTTTGTCAAGTGCGGGCTAGCATTGAGCAACAGGGACGCGACTACGCCTTACTGCTGGACATCAAGAGCCGCCTGGAGAAGGAGATCGCCACCTATAGAAGCCTCCTGGAAAATCAGGACATCAAAACCCAAATTCCAGGATCAACTATCATGATCTCAGGTGGATCTCACTCCTCAGGAGGATCTCACATCGTCACATCTGGTGGATCTCAGTCCTCTGGTGGTTCTCACACCATCACAACTGGTGGACCAACAATCCAAATCAAGCAAACCACCACCACTTCACACCGTACTTACTAAAGTCACAGCGTGCCGCTTCGTGAGACAGTGTTCAAACACGTGCAGGCATTTCATATTAACTGAGTCTTAATACAGTTTGTGTGACATGACAAAAAACATTGAAAGAAACTTACTGTTATGTTGCTGTATGTGAgtctcttaaaataaaatggctgTCAATAAA

Function

symbol description
krt93 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in jaw row breeding tubercle. Human ortholog(s) of this gene implicated in autosomal recessive woolly hair 3. Orthologous to several human genes including KRT19 (keratin 19) and KRT20 (keratin 20).

NR:

description
PREDICTED: keratin, type I cytoskeletal 19-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251375.1 True 1752 mRNA 0.51 8 15446171 15449037

Neighbor

gene id symbol gene type direction distance location
LOC122354569 krt94,LOC107563560,LOC107753855,LOC107680518,LOC107562075,LOC107674540,LOC107718880,LOC107753853 coding upstream 3089 15440488 ~ 15443082 (+)
krt15 krt15,LOC107562073,LOC107680524,LOC107753852,LOC107674548,LOC107563552,LOC107718876 coding upstream 23025 15420784 ~ 15423146 (+)
krt99 LOC107753854,LOC107680487,LOC107674510,LOC107562074,LOC107718894,LOC107564824 coding upstream 35262 15403853 ~ 15410909 (+)
cdc6 cdc6,LOC107718871,LOC107674517,LOC107753851,LOC107680478,LOC107562079 coding upstream 97874 15343559 ~ 15348297 (+)
wipf2a LOC107680504,LOC107562076,LOC107753881,LOC107718872,LOC107674524,LOC107563570 coding upstream 103754 15332922 ~ 15342417 (+)
c11h6orf120 zgc:77929,LOC107680519,LOC107579608,LOC107674518,LOC107563672,LOC107718909 coding downstream 11803 15460840 ~ 15463651 (+)
mrpl4 mrpl4,LOC107753863,LOC107680457,LOC107597183,LOC107680460 coding downstream 15511 15464548 ~ 15467946 (+)
lgsn lgsn,LOC107753865,LOC107597143,LOC107718882,LOC107563521 coding downstream 46006 15495043 ~ 15498974 (+)
rbms1a rbms1a,LOC107753799,LOC107718885,LOC107656076,LOC107563588,LOC107674550 coding downstream 213842 15662879 ~ 15679375 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 237647 15686684 ~ 15696931 (+)
G82096 NA non-coding upstream 16763 15424417 ~ 15429408 (+)
LOC122354481 NA non-coding upstream 27186 15415647 ~ 15418985 (+)
LOC122354565 NA non-coding upstream 62722 15374954 ~ 15383449 (+)
G82080 jupa,LOC107674533,LOC107562072,LOC107753847,LOC107680531,LOC107577149 non-coding upstream 91368 15353693 ~ 15354803 (+)
G82071 LOC107753843,LOC107562070,LOC107563489,LOC107718864,LOC107680456 non-coding upstream 170025 15274713 ~ 15276146 (+)
G82109 LOC107718897,LOC107674554,LOC107680534,LOC107597144 non-coding downstream 50077 15499114 ~ 15499972 (+)
G82116 NA non-coding downstream 53889 15502926 ~ 15524598 (+)
G82133 NA non-coding downstream 84393 15533430 ~ 15533904 (+)
G82222 NA non-coding downstream 103093 15552130 ~ 15553031 (+)
G82229 NA non-coding downstream 128311 15577348 ~ 15578158 (+)
hap1 si:dkey-28e7.3,LOC107680538,LOC107674537,LOC107718874,LOC107753848,LOC107564818,LOC107562051 other upstream 45979 15389066 ~ 15400192 (+)
LOC122354546 abcc10,LOC107753844,LOC107680503,LOC107674523,LOC107718869,LOC107680501 other upstream 114539 15306652 ~ 15331632 (+)
G82072 LOC107753843,LOC107680456,LOC107562070,LOC107718864,LOC107563489 other upstream 164014 15280979 ~ 15282157 (+)
palm1a palm,palm1a,LOC107656088,LOC107674557,LOC107723854,LOC107753814,LOC107593145 other upstream 590299 14824407 ~ 14855872 (+)
zfyve9b zfyve9b,LOC107753830,LOC107656105,LOC107562066,LOC107723065,LOC107665831 other upstream 957362 14472566 ~ 14488809 (+)
col9a1a col9a1a,LOC107674561,LOC107563512,LOC107753862,LOC107680514,LOC107718896,LOC108438673 other downstream 7845 15456882 ~ 15491776 (+)
G82131 NA other downstream 81556 15530593 ~ 15531490 (+)
mcf2l2 mcf2l2,LOC107656072,LOC107753795,LOC107563754,LOC107674528,LOC108439422,LOC108270998,LOC107718904 other downstream 292600 15741637 ~ 15802025 (+)
LOC122354637 naaladl2,LOC107674503,LOC107600312,LOC107568636,LOC107674502 other downstream 704263 16153300 ~ 16345752 (+)
LOC122353648 cap2,LOC107706226,LOC107754274,LOC107592045 other downstream 1145525 16594562 ~ 16604382 (+)

Expression


Co-expression Network