LOC122353648 (cap2,LOC107706226,LOC107754274,LOC107592045)


Basic Information

Item Value
gene id LOC122353648
gene name cap2,LOC107706226,LOC107754274,LOC107592045
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16594562 ~ 16604382 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU122016
TCAAAATGGCGATGACGCATAAGGAGCCGGCAAAGACTGAGATGGCTGACCTCCTCAGACCCATCTCCGACCAGATCCAGGAGGTCCAGAATTTCCGGGAAAAGAACCGCGGCAGCAGCCTGTTCAACCACCTGTCTGCCGTGAGCGAGAGCATCTCCGCCCTGGGCTGGGTGGCAGTGTGTCAGAAACCAGGGCCGTATGTGAAGGAGATGAACGATGCTGCAATGTTCTACACAAACAGAGTTCTGAAAGATTACAAAGACACG
>XM_043251521.1
ATGGCGATGACGCATAAGGAGCCGGCAAAGACTGAGATGGCTGACCTCCTCAGACCCATCTCCGACCAGATCCAGGAGGTCCAGAATTTCCGGGAAAAGAACCGCGGCAGCAGCCTGTTCAACCACCTGTCTGCCGTGAGCGAGAGCATCTCCGCCCTGGGCTGGGTGGCAGTGTGTCAGAAACCAGGGCCGTATGTGAAGGAGATGAACGATGCTGCAATGTTCTACACAAACAGAGTTCTGAAAGATTACAAAGACACGTTAGTGcatacgtttatttatttaCGTTCCTATCTAAGCATCTGGACTGAACTTCAGAACTACATAAAAGAGCACCACACCACTGGACTCGTCTGGAACAGGACTGGTCCTGTAGCCTCTCCTTCACTGTTCagtgctcctcctcctcctcctccaccaccaccaccaccaggtCCTCCTCCGATGTTCATGGATGACAGCCCCAAACACGAGGACACAGCAGCCCAGCAATCTGCTCTGTTTGCACAGCTCAACCAGGGAGAGGCCATCACTAAAGGTCTGAAGCATGTGTCTGAAGAGCAGAAGACCTATAAGAACCCCAACTTACGCTCTCAGGGAGAGAAGACACATCAGGGATCTTCAGGCAAAAGCCAGAAGCCCAGCTCGTCTGCCTGTGCAGCTGCCAAAAAACATTCCCCCGTGCTGGAGCTGGAAGGAAAGAAGTGGAGGGTGGAGCACCAGGAGAAGTCTCATGACCTGGTGATAGAGGAGACCGAGCTCAGACAGGTGGTTTATGTCTTTAGCTGTAGCAACTCCACACTCCAGATCAAAGGCAAAGTCAACTCCATCATAGTGGATGACTGTAAGAAGCTCGGACTCGTGTTTGACAATGTGGTGGGCATCGTAGAGATCATCAACTCCAGAGACATTCAGCTTCAGGTAATGGGGAAGGTTCCTACTATTTCCATTAACAAGACCGAGGGTTGCCATGTCTACTTGAGCAAGGATTCACTTGACTGTGAGATTGTCAGTGCCAAGAGCTCTGAGATGAACGTTCTCGTTCCTGAGGGAGATGATGATTACAGGGAGTTTCCAATCCCAGAGCAGTTTAAAACGGTTTGGGACGGCTCCAGCCTTGTGACAGAGCCCACAAAGATGGCTGGTTGATTTCTTCTCCAGCTCGTCATCGCTTTCCTCCTACCCAGAATTCTTCAAGCACTTTCACTGTATCACACTGTTAGCGGAGATGGAAGAATTCATACATTGTGGTTGTGAGAGTTGTAGATTTAGGCTAAGGAAATTCAATTTATGAGCAAAATATGGACAAAAGTTCCATTTCCACGAAccaattttgaaacattttaacaaacggAGATGGAGATGTTTCTCcgtaacaataaaacaattatccttagcaataaaaatacataatatagatatttattatacattaaaagtAACTACACGTGATGGTACTATTATGTGTGAATATGGGATTTTTTAGTCAACAACTCAAAGTActaagttaaaataattaataataaacaaattaaaaaataatgaatcagtaagtaatttatttaatctcatagctatttattttaaatc

Function

symbol description
cap2 Predicted to enable actin binding activity and adenylate cyclase binding activity. Predicted to be involved in cAMP-mediated signaling; cell morphogenesis; and regulation of adenylate cyclase activity. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system; heart; male organism; muscle; and neural tube. Orthologous to human CAP2 (cyclase associated actin cytoskeleton regulatory protein 2).

NR:

description
PREDICTED: adenylyl cyclase-associated protein 2-like

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K17261 CAP1_2, SRV2; adenylyl cyclase-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU122016 False 266 TUCP 0.54 3 16594562 16599832
XM_043251521.1 True 1590 mRNA 0.45 10 16594567 16604382

Neighbor

gene id symbol gene type direction distance location
LOC122353774 LOC107681051,LOC107740425,LOC107684348,LOC107730326 coding upstream 3487 16574107 ~ 16591075 (+)
LOC122354135 LOC107739009,LOC107548904,LOC107677253,LOC107712820,LOC107697972,LOC107590274,LOC571722 coding upstream 20085 16571111 ~ 16574477 (+)
LOC122353773 plppr3b,LOC107753813,LOC107593129,LOC107656087,LOC107674515,LOC107602805,LOC107723853 coding upstream 30844 16558900 ~ 16563718 (+)
si:ch211-51h4.2 LOC107753790,LOC107655988,LOC107600313 coding upstream 149328 16346754 ~ 16445234 (+)
nlgn1 nlgn1,LOC107593140,LOC106584306 coding upstream 475783 15900885 ~ 16118779 (+)
LOC122354647 kcnmb2,LOC107656067,LOC107600278,LOC107699784,LOC107753344 coding downstream 132836 16737218 ~ 16760688 (+)
tada3l tada3,tada3l,LOC107656064 coding downstream 164964 16769346 ~ 16774335 (+)
hmces hmces,LOC107699786,LOC107655987,LOC107600332,LOC107735859 coding downstream 169978 16774360 ~ 16778584 (+)
LOC122354195 hmces,LOC107699786,LOC107655987,LOC107600332,LOC107735859 coding downstream 292973 16897355 ~ 16900949 (+)
slc25a26 slc25a26,LOC107753784,LOC107656062,LOC107600283,LOC107699790,LOC107753336,LOC107557780 coding downstream 309225 16913607 ~ 16958447 (+)
G82358 NA non-coding upstream 256302 16337966 ~ 16338260 (+)
G82328 NA non-coding upstream 755331 15838604 ~ 15839231 (+)
G82243 NA non-coding upstream 977573 15612227 ~ 15616989 (+)
G82229 NA non-coding upstream 1016404 15577348 ~ 15578158 (+)
G82222 NA non-coding upstream 1041531 15552130 ~ 15553031 (+)
G82413 arpc4,LOC107753787,LOC108440459,LOC107673563,LOC107600279 non-coding downstream 161988 16766370 ~ 16889861 (+)
G82414 NA non-coding downstream 174547 16778929 ~ 16902990 (+)
G82412 rab7a,LOC106583206,LOC103385930,LOC101061812,LOC107385419 non-coding downstream 178737 16783119 ~ 16783856 (+)
G82416 rab7a,LOC106582926 non-coding downstream 302105 16906487 ~ 16908162 (+)
G82501 NA non-coding downstream 447841 17052223 ~ 17393686 (+)
LOC122354637 naaladl2,LOC107674503,LOC107600312,LOC107568636,LOC107674502 other upstream 248810 16153300 ~ 16345752 (+)
mcf2l2 mcf2l2,LOC107656072,LOC107753795,LOC107563754,LOC107674528,LOC108439422,LOC108270998,LOC107718904 other upstream 792537 15741637 ~ 15802025 (+)
G82131 NA other upstream 1063072 15530593 ~ 15531490 (+)
col9a1a col9a1a,LOC107674561,LOC107563512,LOC107753862,LOC107680514,LOC107718896,LOC108438673 other upstream 1102786 15456882 ~ 15491776 (+)
hap1 si:dkey-28e7.3,LOC107680538,LOC107674537,LOC107718874,LOC107753848,LOC107564818,LOC107562051 other upstream 1194370 15389066 ~ 15400192 (+)
G82555 cstf1,LOC107727783,LOC107567730,LOC107555629,LOC107685639 other downstream 995504 17599886 ~ 17600362 (+)
G82620 fam83d,LOC107727784,LOC107581924,LOC107655036,LOC107749477 other downstream 1090693 17695075 ~ 17695648 (+)
LOC122353788 si:dkey-49n23.1,LOC107719940,LOC107720332,LOC107691183,LOC107657315,LOC107557964 other downstream 1170086 17774468 ~ 17789002 (+)
LOC122353540 fam19a1,LOC107729407,LOC108280984,LOC105017301,LOC106583036,LOC107600286,LOC107656058,LOC107558887 other downstream 1261671 17866053 ~ 17988564 (+)
LOC122353960 LOC107656047,LOC107755188,LOC107600294,LOC107746892,LOC107696835,LOC107558898 other downstream 1536864 18141246 ~ 18146692 (+)

Expression


Co-expression Network