nrtn (nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927)


Basic Information

Item Value
gene id nrtn
gene name nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13426254 ~ 13442667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251595.1
CGAGCGGCGATCTTTCGTGAGCAGAAACCACAGCGCTCTTCTACGGAGGAAGGGTTGGAATATTGATCGATGCCATTTTTACCCGGAGGTCAGCTGAACAGACGCGCTGTGGAGTCTGGATAAGCCGGGCAGACGGGGCCCAATGCTTCTCCTCATTCTAAGATGAAGTTATGGAAGTTTGCTGCCATCGGCCTGATTCTCTGTGGTGCTGCACTTCCCCTGCTCGTCCTTAAAACCACTTCCTCTTCCCGAGCCCCGCCCCCTCCTCCCCACCGCAGAGCTTCATCCTCATCACTTTCACCTCCATCTTCTTCATTCACGCCAAGCAACTCTTCGTCTACCGCTGCGGCAGGTGGACGGCATCGGAGAGTCAGATCAGCGGACGGAGGAAACTCTCTGGTATCAGAATTCATGAAGATGTTCCAGAGCTTCACAGAGGGCGAGCTGAAGCAGGTCATTGGGACACTGGTGGAAAGGAAAGCCCGCAGAGATGCCCAGCAGAGCAAAAGAACTAAACGTGCAAAAAAACGATCCAAACCCTGTTCTCTGCAGGAGGTGGAGGTGACGGTCAGTCAGCTGGGGTTGGGATACGTCAGCGACGAGACTATAGTCTTCCATTACTGCAGCGGAAAGTGCACCACTAGCCGCAAAAACTATGACCTGACGCTGGCGTTCATGAAGCGCTCGAGGCTGCTAACAAGGGACCAGAAGGACAAAGCGCGACACAGCCCCTGCTGTCGGCCCACCGCGTACGAGGAGGACATCTCCTTCCTCGATAACTTCAACAAATACCACACGATCCAAGAGTTTTCGGCCAAAGCGTGCGGATGCGTCTGACGTCGAGCGGGAAGCATAACACCTTTTAATCTCTGAAAAATACAGACCCTCGATTCTGAGAAGAAAATCTTCCCGGGCTTAAAGCACTGAGGCGAGAGCTCACGTCTTGCATTGCCTTCACGAAACATACTCGAGTGGCAGATTCTCCTCAGACACTTCTGCCAGTCCCGATGAAGAGAAACCGGaaatatattaagcaaataATTATTCTCATGTTTAGTCGTTGCTGATGAGATGCTGCTGTGTATCCTGTTTCTATTGCCTTCGTGGGTCTAATTTCGAATAGTTTGAAATGTTGGGTGGATGCTCAGAGTTTCGACGTCGAAAAACCTCTAGAAAATTCATTCAGGGCTTCGGTAAACAAAGCAAGTACACAAAGGCACGCCCAATGCCGAACAAAACTTCCTCGTCGTGTAACTGACCTGTAAATGATCCCAGCGGCTCTGAAAGGTTTCAACTCTGACGTTTCAAAAGCTAAACATTCCCacaaatcaaattcaaacacATTCGTTTTACTGAAAATCTACCTCAGCCTTGCTACAGTCAACATGgctctttaaaagaaaacccaATATTTGATCAagagatttacatttattaaatgttgcgACATTCGAATAAAGGTTACGTTTAAAAAGATCAATAAGGAAACTAATAAACTGCTATAATGCTAGGTATCATAAAAATGCGGACGTTGTACGTGGTAACTGGTGGTTTCTGAACAAACTCACACAGGGACAAGTACCTTGTGACAACGTGTTATCCTGCGAAATCTGTTAAATCCGACAACCTTCAGAACCAGATAAATTGCAATGCTCAATTTTATGCACCAATTTATAAAATTTGACGCATTTATGAAACAATAATACAACGTCCAAAACGATCTCATTGCAAAACTACTATGCATTCTGTCAAACTGGTGGCTAATACTCATCCATGTTTTCATACGATCTCCTCTCATCCAAGTGACGGTTACATTCATGGGTAGACCTCCGAGCTAATATCTTTTGCTACGTATCATGCATTTTCGTACTTCACGTTGTGTGAATTCATACGAAATCAGCACCTTGTAAAACGGATTTCCGGCGAGACGCCGTAAAAAGGTTGAATCAGCCAGCTCCAGCAGACTTTGGGGGTTCCGCAGCttatttttgagttttattaactttaattttgttgCATAAAGTTCCGGGTAAAACTCAAATCTGTTGAGGCTGGTTGACTCAAACTTTTAAGTTCGCTCAACTTTTTCTTATTCTCCTTATCTTCCAGTCAGGTCctatatagagagagaaactGGATCAATTTGTTCAAACGGCCTAGAAAGCAAACATCAAGTCAATCTGCACTGTTCCTCAGAGGAAAAATCGGATCGCACCCTTTTAAGAATCCCCCAGAATCAGTTTCCTCTCTCTATCGGACGGTTTTCGTTCCTCTAGATACTTGCGAATGTACTGAAATCGCCGGAGTCAGGCTATCCTTGCCCGAGGTCTTCCCTTAGTTAACCTGACCAAATCCACTTTATTTGTGTAAATCCTATAACACAAGAGTCTAATCCACTTTAGCCCCTGTCAAGCCTTGGCCAAAAATACAGAGAACTAAAGTGGGAAGAACCAGGTAGCATAAGCATCGAATAAGTCTCTAAATAAACCCGTGTCCTGATTTTAGCTCTAAACTCCACCAAAATAATCTCTGGTAATTAAGCATTGAACAAGCACAGACGCCGGTGAAACTAACTCCTCGTTTCGAATTTCCGCAGTCAATCATGTTCGCATTGacagaaaaataacactttataataatattatataacgCTGTATTTAGTGGATTACGGCT

Function

symbol description
nrtn Predicted to enable glial cell-derived neurotrophic factor receptor binding activity; growth factor activity; and receptor tyrosine kinase binding activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Hirschsprung's disease. Orthologous to human NRTN (neurturin).

NR:

description
PREDICTED: neurturin-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251595.1 True 2673 mRNA 0.45 3 13426254 13442667

Neighbor

gene id symbol gene type direction distance location
babam1 babam1,LOC107747315,LOC107680561,LOC107685168 coding downstream 110616 13310322 ~ 13315638 (-)
plvapb plvap,LOC107680480,LOC107747760,LOC107597160,LOC107685179,LOC107757946 coding downstream 119112 13302345 ~ 13307142 (-)
ano8b ano8,ano8b,LOC107685197,LOC107680545,LOC107597162,LOC107747324 coding downstream 138338 13266834 ~ 13287916 (-)
dda1 dda1,LOC107685208,LOC105913185 coding downstream 161321 13261384 ~ 13264933 (-)
abhd8b abhd8b,abhd8,LOC107747334,LOC107578087,LOC107680465 coding downstream 165012 13256637 ~ 13261242 (-)
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding upstream 14527 13457194 ~ 13459276 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 86265 13528932 ~ 13530398 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 154722 13597389 ~ 13598903 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding upstream 417238 13859905 ~ 13862212 (-)
ddx49 ddx49,LOC107747066,LOC107757937 coding upstream 419564 13862231 ~ 13866394 (-)
G81643 NA non-coding downstream 36135 13389731 ~ 13390119 (-)
G81624 NA non-coding downstream 96247 13329404 ~ 13330007 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding downstream 101123 13323679 ~ 13325131 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding downstream 104233 13320166 ~ 13322021 (-)
G81609 rps15,LOC107680474,LOC107685215,LOC107578086 non-coding downstream 112775 13253410 ~ 13313479 (-)
G81657 LOC107757942 non-coding upstream 17807 13460474 ~ 13701441 (-)
LOC122353923 NA non-coding upstream 65990 13508657 ~ 13511170 (-)
G81667 vmac,LOC107680554,LOC107685109,LOC107757942 non-coding upstream 161835 13604502 ~ 13704964 (-)
G81701 NA non-coding upstream 334950 13777617 ~ 13778410 (-)
G81791 NA non-coding upstream 337989 13780656 ~ 13780870 (-)
ccl25b LOC107680477 other downstream 32246 13349936 ~ 13394008 (-)
ccl44 ccl44,LOC107597158,LOC107685327,LOC107553533 other downstream 56257 13366567 ~ 13369997 (-)
G81512 NA other downstream 368373 12817753 ~ 13057881 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other downstream 436297 12984373 ~ 12989957 (-)
LOC122353859 NA other downstream 460621 12956861 ~ 12965633 (-)
G81663 NA other upstream 130064 13572731 ~ 13593554 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other upstream 163605 13606272 ~ 13609604 (-)
G81650 NA other upstream 255432 13698099 ~ 13699958 (-)
G81799 NA other upstream 407668 13850335 ~ 14291509 (-)
G81829 NA other upstream 443016 13885683 ~ 14305124 (-)

Expression


Co-expression Network