LOC122353919 (gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151)


Basic Information

Item Value
gene id LOC122353919
gene name gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13528932 ~ 13530398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251821.1
AGCGAAGGAATACTACCGAGCGACATTTGGATTATACTTTGGCCAGCGCGCTTTGACTGGATTTTAATATTTCCGAGCTCTTCCGGAGACTTGTGGATTACTATTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATCACTGATAAAAAaatgGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGCAGCAGCGCAGAGACAGGACTGTCTCACCGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTAGACCCGGATTGTGTCGTACTGTGCGTTCTGGCCACCGACGAGGAGGACCAGGACGACATTGCCCTGCAGATTCACTTCACGCTCCTTCAGGCGTTCTGCTGCGACAACGACATCAACATCCTGCGGGTGTCCGGGCTGAGACGCCTCGCACAGGTGCTCGGGGAGCCCGCCACCGTGGACAACAACGAGCCGAGGGATTTCCACTGCATAATAGTCACCAACCCCCAGTGCCAGCCGCTCAAATGCCAGGCGCTGAAAGACGTGGGCAACTACTGCGAAGAAAGCCGCTGCAAAAACCAGTGGATCCCCTATCTGTCCCTGCAGGAACGCTGAACGGACCGCGGTGCTTTTTCGATGCAACGAAAGGATGAACGAGTCATTCCCCGCGAatgaaaaggaggaaaaaaaaaggggcTCCGCGCCAGCCGCCGGTGACCGCTGCGTCACGAGAAGGGGCTGCGAGAGAGAGAAGTGGAGCTTTGGGACCGTGCGCGCACGGGACCGGTACATTCCAGCTTGTCGTGACCTCCGCGGGGGGTAGCGGAGGAACAAGCTGTGGGAACACGAACTGCGAAAGGCCGCCCGTcggcgcgcgcgcgctcgcggAGAACCTGCGCGCGGGCGGCGTGGGCGCGCAACGGGTTGGAAAGGGACGAGCGTGCGTCACTATCGAACATTTTGCGAACGCCGACTGAACGATGCGTGTACGTGCCGGACTATAGCGACAATATAGTGACTGAACCCGCTATAAAAGGACCGCAATCGCTTCTGTTAGACTGCACTGTGTCTGtggaacaagaaaaaaatgacttctGTTGAGTTGAGAAATGCATACTATGAATTGGTGTAAGTTATTTGCGGTAATTTAAAAAGACTTAATATATGCATTGCTGCTTTTTGTCAAATGCGATGTTGTTTCAATAAATTATTGACTGAGAATTGTA
>XM_043251822.1
CGACATTTGGATTATACTTTGGCCAGCGCGCTTTGACTGGATTTTAATATTTCCGAGCTCTTCCGGAGACTTGTGGATTACTATTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATCACTGATAAAAAGTAAaatgGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGCAGCAGCGCAGAGACAGGACTGTCTCACCGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTAGACCCGGATTGTGTCGTACTGTGCGTTCTGGCCACCGACGAGGAGGACCAGGACGACATTGCCCTGCAGATTCACTTCACGCTCCTTCAGGCGTTCTGCTGCGACAACGACATCAACATCCTGCGGGTGTCCGGGCTGAGACGCCTCGCACAGGTGCTCGGGGAGCCCGCCACCGTGGACAACAACGAGCCGAGGGATTTCCACTGCATAATAGTCACCAACCCCCAGTGCCAGCCGCTCAAATGCCAGGCGCTGAAAGACGTGGGCAACTACTGCGAAGAAAGCCGCTGCAAAAACCAGTGGATCCCCTATCTGTCCCTGCAGGAACGCTGAACGGACCGCGGTGCTTTTTCGATGCAACGAAAGGATGAACGAGTCATTCCCCGCGAatgaaaaggaggaaaaaaaaaggggcTCCGCGCCAGCCGCCGGTGACCGCTGCGTCACGAGAAGGGGCTGCGAGAGAGAGAAGTGGAGCTTTGGGACCGTGCGCGCACGGGACCGGTACATTCCAGCTTGTCGTGACCTCCGCGGGGGGTAGCGGAGGAACAAGCTGTGGGAACACGAACTGCGAAAGGCCGCCCGTcggcgcgcgcgcgctcgcggAGAACCTGCGCGCGGGCGGCGTGGGCGCGCAACGGGTTGGAAAGGGACGAGCGTGCGTCACTATCGAACATTTTGCGAACGCCGACTGAACGATGCGTGTACGTGCCGGACTATAGCGACAATATAGTGACTGAACCCGCTATAAAAGGACCGCAATCGCTTCTGTTAGACTGCACTGTGTCTGtggaacaagaaaaaaatgacttctGTTGAGTTGAGAAATGCATACTATGAATTGGTGTAAGTTATTTGCGGTAATTTAAAAAGACTTAATATATGCATTGCTGCTTTTTGTCAAATGCGATGTTGTTTCAATAAATTATTGACTGAGAATTGTA

Function

symbol description
gadd45ba Acts upstream of or within several processes, including regulation of glomerular visceral epithelial cell apoptotic process; response to methylmercury; and somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including EVL; axis; cleithrum; mesoderm; and nervous system. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).
gadd45b Involved in positive regulation of JNK cascade; positive regulation of apoptotic process; and positive regulation of p38MAPK cascade. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 beta-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0046686 response to cadmium ion biological_process
GO:0051597 response to methylmercury biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251821.1 True 1208 mRNA 0.53 4 13528932 13530398
XM_043251822.1 False 1192 mRNA 0.53 4 13528932 13530378

Neighbor

gene id symbol gene type direction distance location
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding downstream 69656 13457194 ~ 13459276 (-)
nrtn nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927 coding downstream 86265 13426254 ~ 13442667 (-)
babam1 babam1,LOC107747315,LOC107680561,LOC107685168 coding downstream 213294 13310322 ~ 13315638 (-)
plvapb plvap,LOC107680480,LOC107747760,LOC107597160,LOC107685179,LOC107757946 coding downstream 221790 13302345 ~ 13307142 (-)
ano8b ano8,ano8b,LOC107685197,LOC107680545,LOC107597162,LOC107747324 coding downstream 241016 13266834 ~ 13287916 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 66991 13597389 ~ 13598903 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding upstream 329507 13859905 ~ 13862212 (-)
ddx49 ddx49,LOC107747066,LOC107757937 coding upstream 331833 13862231 ~ 13866394 (-)
LOC122354669 comp,LOC107680551,LOC107747026,LOC107733073,LOC107665851 coding upstream 359513 13889911 ~ 13899165 (-)
zrsr2 zrsr2,LOC107753840,LOC107729896,LOC107602790 coding upstream 836773 14367171 ~ 14373481 (-)
LOC122353923 NA non-coding downstream 17762 13508657 ~ 13511170 (-)
G81643 NA non-coding downstream 138813 13389731 ~ 13390119 (-)
G81624 NA non-coding downstream 198925 13329404 ~ 13330007 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding downstream 203801 13323679 ~ 13325131 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding downstream 206911 13320166 ~ 13322021 (-)
G81667 vmac,LOC107680554,LOC107685109,LOC107757942 non-coding upstream 74104 13604502 ~ 13704964 (-)
G81701 NA non-coding upstream 247219 13777617 ~ 13778410 (-)
G81791 NA non-coding upstream 250258 13780656 ~ 13780870 (-)
G81834 NA non-coding upstream 592078 14122476 ~ 14130140 (-)
LOC122353702 NA non-coding upstream 647466 14177864 ~ 14178450 (-)
ccl25b LOC107680477 other downstream 134924 13349936 ~ 13394008 (-)
ccl44 ccl44,LOC107597158,LOC107685327,LOC107553533 other downstream 158935 13366567 ~ 13369997 (-)
G81512 NA other downstream 471051 12817753 ~ 13057881 (-)
G81663 NA other upstream 42333 13572731 ~ 13593554 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other upstream 75874 13606272 ~ 13609604 (-)
G81650 NA other upstream 167701 13698099 ~ 13699958 (-)
G81799 NA other upstream 319937 13850335 ~ 14291509 (-)
G81829 NA other upstream 355285 13885683 ~ 14305124 (-)

Expression


Co-expression Network