LOC122354669 (comp,LOC107680551,LOC107747026,LOC107733073,LOC107665851)


Basic Information

Item Value
gene id LOC122354669
gene name comp,LOC107680551,LOC107747026,LOC107733073,LOC107665851
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13889911 ~ 13899165 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252947.1
TCCTCCTGCCTTCACTCAGCATGCTGTGGACTCTTCTGTTCAGCTGCAGCTTTTATCTGCGCGGGGCTCTGGTTTCTGCTCAAGGAGTATCCAGAGATGGAGAGATTATCAAGCAGATTAAAGGCACAAACCACGAGCTTGCTGAAATCAAAGAACTGCTGAAGCAACAGATACAGGAAATAGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGTGGCATGAGACCAGTAGATCCAATAGAGCCGTCATGCGTTCCCAACCCTTGCCATCCTGGTGTGGAATGCCTAATGACTCCCAGCGGGGTGAAATGTGGTCCGTGTCCAGAGGGCATGACAGGAAATGGAACTCACTGTACAGATGTTGATGAGTGTGCTGTAATGCCATGTCACATGGGGGTGAGATGCATCAACACATCACCTGGTTTTCGCTGTGGCCCCTGTCCTGCTGGGTACATGGGCCCCCAGGTGCAGGGGGTGGGGCTTACCTATGCATCTGCCAATAAACAGGTGTGCAAAGACGTCAATGAGTGTGAGAACTCGAATGGAGGCTGCGTGGAGAACTCCAACTGCATTAACACACCGGGCTCTTTTCGCTGTGGCCAGTGCAAGGCTGGTTTTGTTGGGGATCAGGTGAAAGGCTGCAAACCTGAGCGGGCCTGTGGTAATGGTCAGCCCAATCCTTGCCATGCCAGCGCAGAATGCATTGTTCATCGCGATGGACAGATTGAATGCGCATGTGGAGTTGGATGGGCTGGGAATGGGTACTTTTGTGGAACGGACACCGATATTGATGGCTTCCCTGATGAAAAGCTGGAATGTGTGGAAAGGAACTGtgcaaagGACAACTGCCTCACCGTTCCAAACTCTGGCCAAGAGGATGCAGACAAGGATAACATCGGTGATGCTTGTGATGATGATGCAGATGGAGATGGGATACTAAacacagagGACAACTGCGTGCTCGTCCCCAACGTTAATCAGAAGAACACTGATCAGGACGATTATGGAGACGCTTGTGATAATTGCCGTCTGGTAAAAAACAATGACCAGAAGGACACCGATAGCGACGGCCAGGGTGATGAATGTGATGATGACATTGATGGGGATGGaatcaaaaacaataaagataaTTGCAAAAAGGTGCCAAACCGTGACCAGAAAGATAGAGACGGTGATAATGTTGGTGATGCTTGTGACAGCTGTCCCTATGTCCGCAACCCTGATCAGACGGATGTGGATAATGACTTGATTGGCGATCCTTGTGACACCAACAAAGATAGTGATGGAGATGGGCATCAGGACTCTCGGGACAACTGCCCTGCAGTCATCAACAGCTCCCAGCTGGACACGGACAAGGATGGCATCGGAGATgaatgtgatgatgatgatgacaacGATGGTATTCCCGATCTTCTTCCACCCGGTCCAGACAACTGCCGCCTGGTTCCAAACCCACTGCAGGAGGACTTTGATGGTGATGGGATTGGCAACGTTTGTGAGAATGACTTTGACAATGACACATATAGTGACAACATTGACGTTTGTCCTGAGAATGCTGAGGTGACTCTCACCGACTTCAGAACCTACCAGACTGTGGTTCTGGATCCAGAAGGAGATGCGCAGATCGATCCAAACTGGGTGGTGCTCAATCAGgGAAGAGAGATTGTACAGACCATGAACAGTGATCCTGGCCTGGCTGTAGGCTACACGGCATTCAATGGTGTGGACTTTGAAGGGACGTTTCATGTGAATACTGAGACAGATGATGACTACGCAGGCTTTATCTTTGGCTATCAGGACAGCTCCAGCTTCTATGTGGTGATGTGGAAGCAAGTGGAGCAGATTTATTGGCAAGCCAATCCTTTCCGAGCTGTGGCCGAGCCTGGCATCCAGCTGAAGGCAGTGAAATCAGACACGGGACCTGGAGAAAACCTGCGGAATTCGCTCTGGCACACAGGTGACTCGACAAACCAGGTGAAACTCTTATGGAAAGATTCCAGAAATGTTGGCTGGAAAGATAAGACTTCCTACCGCTGGTTCCTGCAGCACAGGCCCCAAGAAGGCTACATCAGGGTTCGGTTCTTTGAAGGTCAGCAGATGGTAGCAGATACAGGAATTATCATCGACACAACCATGAGAGGAGGCAGACTGGGAGTTTTCTGCTTCTCCCAGGAGAACATCATCTGGGCCAACCTGCGCTACAGATGCAATGataCAATCCCTGAGGACTTTGAGACATTCAGAAGCCAGCAAATCCAGCTTTTTTGaacccaaactttttttttttttttttttttttttttttttacaagattaATGAATGTGAGTTGTATATTTCTGTCGTGTGTGTCATATTTTATACTCCAT
>XM_043252948.1
TCCTCCTGCCTTCACTCAGCATGCTGTGGACTCTTCTGTTCAGCTGCAGCTTTTATCTGCGCGGGGCTCTGGTTTCTGCTCAAGGAGTATCCAGAGATGGAGAGATTATCAAGCAGATTAAAGGCACAAACCACGAGCTTGCTGAAATCAAAGAACTGCTGAAGCAACAGATACAGGAAATAGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGCATGAGACCAGTAGATCCAATAGAGCCGTCATGCGTTCCCAACCCTTGCCATCCTGGTGTGGAATGCCTAATGACTCCCAGCGGGGTGAAATGTGGTCCGTGTCCAGAGGGCATGACAGGAAATGGAACTCACTGTACAGATGTTGATGAGTGTGCTGTAATGCCATGTCACATGGGGGTGAGATGCATCAACACATCACCTGGTTTTCGCTGTGGCCCCTGTCCTGCTGGGTACATGGGCCCCCAGGTGCAGGGGGTGGGGCTTACCTATGCATCTGCCAATAAACAGGTGTGCAAAGACGTCAATGAGTGTGAGAACTCGAATGGAGGCTGCGTGGAGAACTCCAACTGCATTAACACACCGGGCTCTTTTCGCTGTGGCCAGTGCAAGGCTGGTTTTGTTGGGGATCAGGTGAAAGGCTGCAAACCTGAGCGGGCCTGTGGTAATGGTCAGCCCAATCCTTGCCATGCCAGCGCAGAATGCATTGTTCATCGCGATGGACAGATTGAATGCGCATGTGGAGTTGGATGGGCTGGGAATGGGTACTTTTGTGGAACGGACACCGATATTGATGGCTTCCCTGATGAAAAGCTGGAATGTGTGGAAAGGAACTGtgcaaagGACAACTGCCTCACCGTTCCAAACTCTGGCCAAGAGGATGCAGACAAGGATAACATCGGTGATGCTTGTGATGATGATGCAGATGGAGATGGGATACTAAacacagagGACAACTGCGTGCTCGTCCCCAACGTTAATCAGAAGAACACTGATCAGGACGATTATGGAGACGCTTGTGATAATTGCCGTCTGGTAAAAAACAATGACCAGAAGGACACCGATAGCGACGGCCAGGGTGATGAATGTGATGATGACATTGATGGGGATGGaatcaaaaacaataaagataaTTGCAAAAAGGTGCCAAACCGTGACCAGAAAGATAGAGACGGTGATAATGTTGGTGATGCTTGTGACAGCTGTCCCTATGTCCGCAACCCTGATCAGACGGATGTGGATAATGACTTGATTGGCGATCCTTGTGACACCAACAAAGATAGTGATGGAGATGGGCATCAGGACTCTCGGGACAACTGCCCTGCAGTCATCAACAGCTCCCAGCTGGACACGGACAAGGATGGCATCGGAGATgaatgtgatgatgatgatgacaacGATGGTATTCCCGATCTTCTTCCACCCGGTCCAGACAACTGCCGCCTGGTTCCAAACCCACTGCAGGAGGACTTTGATGGTGATGGGATTGGCAACGTTTGTGAGAATGACTTTGACAATGACACATATAGTGACAACATTGACGTTTGTCCTGAGAATGCTGAGGTGACTCTCACCGACTTCAGAACCTACCAGACTGTGGTTCTGGATCCAGAAGGAGATGCGCAGATCGATCCAAACTGGGTGGTGCTCAATCAGgGAAGAGAGATTGTACAGACCATGAACAGTGATCCTGGCCTGGCTGTAGGCTACACGGCATTCAATGGTGTGGACTTTGAAGGGACGTTTCATGTGAATACTGAGACAGATGATGACTACGCAGGCTTTATCTTTGGCTATCAGGACAGCTCCAGCTTCTATGTGGTGATGTGGAAGCAAGTGGAGCAGATTTATTGGCAAGCCAATCCTTTCCGAGCTGTGGCCGAGCCTGGCATCCAGCTGAAGGCAGTGAAATCAGACACGGGACCTGGAGAAAACCTGCGGAATTCGCTCTGGCACACAGGTGACTCGACAAACCAGGTGAAACTCTTATGGAAAGATTCCAGAAATGTTGGCTGGAAAGATAAGACTTCCTACCGCTGGTTCCTGCAGCACAGGCCCCAAGAAGGCTACATCAGGGTTCGGTTCTTTGAAGGTCAGCAGATGGTAGCAGATACAGGAATTATCATCGACACAACCATGAGAGGAGGCAGACTGGGAGTTTTCTGCTTCTCCCAGGAGAACATCATCTGGGCCAACCTGCGCTACAGATGCAATGataCAATCCCTGAGGACTTTGAGACATTCAGAAGCCAGCAAATCCAGCTTTTTTGaacccaaactttttttttttttttttttttttttttttttacaagattaATGAATGTGAGTTGTATATTTCTGTCGTGTGTGTCATATTTTATACTCCAT

Function

symbol description
comp Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

NR:

description
PREDICTED: thrombospondin-4-like

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252947.1 True 2372 mRNA 0.49 19 13889911 13899165
XM_043252948.1 False 2369 mRNA 0.49 19 13889911 13899165

Neighbor

gene id symbol gene type direction distance location
ddx49 ddx49,LOC107747066,LOC107757937 coding downstream 23517 13862231 ~ 13866394 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding downstream 27699 13859905 ~ 13862212 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 291008 13597389 ~ 13598903 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 359513 13528932 ~ 13530398 (-)
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding downstream 430635 13457194 ~ 13459276 (-)
zrsr2 zrsr2,LOC107753840,LOC107729896,LOC107602790 coding upstream 468006 14367171 ~ 14373481 (-)
txlng txlng,LOC107562084,LOC107753838,LOC107656109,LOC107665847,LOC107723067,LOC107602792 coding upstream 482862 14382027 ~ 14391444 (-)
elovl1b elovl1b,LOC107665848,LOC107656106,LOC107753833,LOC107562086,LOC107602768 coding upstream 589212 14488377 ~ 14511622 (-)
mast3b LOC107753827,LOC107723058,LOC107656100,LOC107692230,LOC107572946 coding upstream 660736 14559901 ~ 14589170 (-)
si:ch211-1a19.2 NA coding upstream 752100 14651265 ~ 14653122 (-)
G81791 NA non-coding downstream 109041 13780656 ~ 13780870 (-)
G81701 NA non-coding downstream 111501 13777617 ~ 13778410 (-)
G81667 vmac,LOC107680554,LOC107685109,LOC107757942 non-coding downstream 184947 13604502 ~ 13704964 (-)
G81657 LOC107757942 non-coding downstream 188470 13460474 ~ 13701441 (-)
G81834 NA non-coding upstream 223311 14122476 ~ 14130140 (-)
LOC122353702 NA non-coding upstream 278699 14177864 ~ 14178450 (-)
G81841 NA non-coding upstream 414604 14313769 ~ 14315698 (-)
G81846 rbb4l,LOC107562083,LOC107753839,LOC105893332,LOC103023991,LOC106943324 non-coding upstream 475545 14374710 ~ 14375944 (-)
G81873 NA non-coding upstream 579345 14478510 ~ 14479111 (-)
G81650 NA other downstream 189953 13698099 ~ 13699958 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other downstream 280307 13606272 ~ 13609604 (-)
G81663 NA other downstream 296357 13572731 ~ 13593554 (-)
ccl25b LOC107680477 other downstream 495903 13349936 ~ 13394008 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other upstream 543436 14442601 ~ 14451740 (-)
G81866 NA other upstream 635553 14534718 ~ 14536392 (-)
G82067 NA other upstream 1305796 15204961 ~ 15214058 (-)
LOC122354561 NA other upstream 1334768 15233933 ~ 15235436 (-)
LOC122354564 NA other upstream 1501753 15400918 ~ 15401691 (-)

Expression


Co-expression Network