il17rd (il17rd,LOC107680557,LOC107597177,LOC107657971,LOC107557418)


Basic Information

Item Value
gene id il17rd
gene name il17rd,LOC107680557,LOC107597177,LOC107657971,LOC107557418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12612824 ~ 12659684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251734.1
TGCGAGGATCTTGCACCTCCCTCACGGTCGGCGGCGGAGCTTCGCTCGAGTTCATTCCCATCAGCGGAGCTTCATGGACGGACAGGAATGGCTGGATCACGGAGACTCGTTCGCTTTCTCGCGGCTTTGTGCGTGTTTTTGTGCTGCGGCGCTGCGAAGAGAGCGAGCTCGGATAAATGCAGCTACAagGGAACGCAGTTGTCCAGCACCGACGAGAACGGACGAAAACTCACGTTTCGATACGACAACTGCTCTCTGAACTGGAATCCGCTCGGGAAGCACGCCATCCATGAAGTGAACAACATCACCTACAGTCATCTGTCTTGTGACAGCCAGGCGGCCGTGGTGGTCCAGTGGATGGCCAGCCCTCTCGGTATCGAACACGTGAAAGGATTCAGGGTGTATCTGGAGGACAAGAATCCCGAGGGAAAGCAGTGCCAGCACATGATCCTGAAGGATCCCAGACAGCTGAACTTCTCTTACAAATCCGTCAGGATGAGCTCACAGCCTTTCTCTGGTCTGGCCTTCGAGACCGACTACATGGTCAGAATCGTCCCGTTTCCCACGTTCCTGAACGACAGCTTCTTTCCGCCATCTTTTCTGCGCACTAACAGTTGTGAAGTGCTTCTTGGCTCGGATAACCTCGTCTGCAAACCATTCTGGAAGCCCAAGACGCTGAATGTGTCTCAGCTGGGATCTAATTTGCATGTCGTGTTTGACCACGCCCCTTCCGCGTTCGGCTTCACCATCTACTACCTGTACTACAAGCTCCGGCAGGAGGGGCCCTTCAGACTCAAGCGCTGCAAACCGGAGCAAAACGGCCCCAAAACCACCTGCGTGTTACAGGACGTCACTCCAGGAACTTACGCAATAGAGCTCCGCGACGACAGCAACACGACCAGAAAGCAGTCGCAGTACCACGTGAGCCAAGTGCATTCCCCGTGGGCCGGACCGATCCGAGCCATGGCCATCACCGTGCCGCTGGTCATCATGTCCGCCTTCGCCACGCTCTTCACCGTCATGTGTCGCAAGAAACAGCAAGAGAACATCTACTCCCACCTGGACGAGGAGAGCTCCGAGTCTTCGTCTCAGACCACGGCGCTGAGCGCGGACAGGCCCTGGCCCAGACCCAAGATCTTCATCTGTTACTCCAGCAGAGACTGTCCCAAACACCTCGCCGTCGTCCAGAGCTTCGCCTTCTTCCTGCAGGACTTCTGCGGCTGCGAGGTGGCGCTGGACCTCTGGGAGCACCTGGAGATCTGTAAGGAGGGTCAGATGTCGTGGCTGAGCCGGCGAATCGATGAGGCTCACTTCATCATCACCGTCTGCTCCAAAGGCCTGAAGTACTTCGTGGAGAAGAGACACCGTAAAGGCAAAGCCACGTCGAAGGAGAACAACCGAGAACCGAGCGCATCCGACTCCTCGGGACACAGAGACCTGTTCCTCGTCGCCACGGCGATGATCGCCGAGAAGATCAAAGAGCTGCATCAGAAGTCGTCGGACCTCTCTCGCTTCATGTCGGTGTACTTCGACTACTCCCACGAGAGCGACGTCCCGACGTCCCTCAACCCGGCGCCCAAATACAAGCTGATGGACCAGCTTCCGCAGCTCTTCGCCCGCCTCCACTCTCGCCAGCTCAGCCTGACCGACCGCGAGCCGCAGCCGCCGAACGTCAGCAAGCGCAACTACTTCCGCAGCCGCTCGGGCCGCTCTCTGTACGTGGCCATCTGCAACATGCACCAGCACGCGGAGCAGGAGCCCGACTGGTTCCAGAAGCAGCTGGCGCCGCCTCCGCCGCCCGGGAAGCGCCCGCCGGCTGCCGAGAAGCCGGACTCGGGGCTGGTGCTGAACGAGGTCAGGCTCAAGCGGCCGTCGGAGGGAGACTGTCCGGCGAGGAGCGGCGTCCTGCTGCTGGCTCCGAGGCTGGGGGTTTCTCGGGAAGATCTCGGGGAGGGTTCGTCTCGTCAGGACGCCGGGTCGTCTCGTCCAGACGGGTCGCCCGGTCCGCCCGAGATGCCCAGGGACTCGGGGATCTACGACTCGTCCGTGCCGTCCTCGGAGCTCTCCATCCCGCTGATGGACGGACTCTCGCCGGACCACGACAACTCGTCTCTGGCCGACAGCGTGTCCTCCTCCTCGGGACTGGgtgacGAGGAGCCCCCTGCGGTCATCTCTCTTCACTGCGCAGCTCCAACGATATGCAAAGCAGAGCTTCACCACATCATCCACCCGAGCGAAGGACTCCTAGCCGCCGCCTCCACCTAGTGGCCTTCAGCCGTACTTGCATCGCCACTTTAATTCCTGTACTTACCACTGACTCAGAGTCTCCAGAAGCCCTGACCAGGGCAAGCCTTGGACGGATGGGATCTCAAGGGATTGAACACCGAGGCGTCCGCGGGCCTGCGTTGTAACCAAAGCGGCCGTGTACTTCGTGCGCAGCCGAGTCTGCGTGTGTTACTACAAACCCCGCGCCGCTCAGACCTTCTTGCCTTAAAAGTGCCGTGAGGCTGTGGACACGAGTGTGTTGTGCTGAATGTCGCTCGCTTTAACATGTAacttcacttttatttattgcattaacgTGCTTCAGTGAAAAGCAACAGACGTGTGTAGATTAGCACTTGAGGTTTTCCACATTAGCCCGGGTTTCGCCGAAGCAGTTCGGCTCGATTTTTAGAAGCATATCATACGcttttttgatgattttatgccttttatttgttttagatggatcttaaaaaaagttcagaagCGTTGACGGCGTCAGAGTAGGTCTGATGTTCGTTCATGACAAAGGGAAGTACAAGCTAAACAACTGAGATGTGccattttcttcagttttatttgtgtacTTTGTTTATCCAggttttgtacagtttttttttagaatattagaAGTGATTTCTACATTATATAAACTTTGTACTGTTTTATAGTACTCTAATGTAGGAGATACGACTTAATAAAACTAAGATTTATA

Function

symbol description
il17rd Predicted to enable interleukin-17 receptor activity. Acts upstream of or within dorsal/ventral pattern formation and negative regulation of fibroblast growth factor receptor signaling pathway. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural keel; and neural rod. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 18 with or without anosmia. Orthologous to human IL17RD (interleukin 17 receptor D).

NR:

description
PREDICTED: interleukin-17 receptor D

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05167 IL17RD, SEF; interleukin 17 receptor D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251734.1 True 2980 mRNA 0.56 13 12612824 12659684

Neighbor

gene id symbol gene type direction distance location
zgc:194981 NA coding downstream 3092 12607236 ~ 12609732 (-)
LOC122353872 NA coding downstream 8121 12603666 ~ 12604703 (-)
tdrd3 tdrd3,LOC107712996,LOC107747549,LOC107680523,LOC107557396,LOC107597179 coding downstream 18037 12577019 ~ 12594787 (-)
foxg1b LOC107744583,LOC107680495,LOC107552399,LOC107657967,LOC107712998 coding downstream 265139 12345539 ~ 12347685 (-)
LOC122353880 NA coding downstream 440926 12169468 ~ 12171898 (-)
appl1 appl1,LOC107712995 coding upstream 11483 12671167 ~ 12684887 (-)
asb14a asb14,LOC107680484 coding upstream 25539 12685223 ~ 12695730 (-)
rps23 rps23,rs23,LOC107680479,LOC106566095 coding upstream 40543 12700227 ~ 12701654 (-)
arf4a arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973 coding upstream 60232 12719916 ~ 12724608 (-)
LOC122353878 zgc:110286,LOC107597171,LOC107747504,LOC107712992,LOC107597172,LOC107557402,LOC107747513 coding upstream 66090 12725774 ~ 12728048 (-)
G81353 NA non-coding downstream 37711 12574863 ~ 12575113 (-)
G81350 NA non-coding downstream 44515 12568109 ~ 12568309 (-)
G81349 NA non-coding downstream 77398 12534950 ~ 12535426 (-)
G81327 NA non-coding downstream 89240 12483243 ~ 12523584 (-)
LOC122353897 NA non-coding upstream 50722 12710406 ~ 12715974 (-)
G81514 NA non-coding upstream 207994 12867678 ~ 12870246 (-)
G81522 NA non-coding upstream 229244 12888928 ~ 12890216 (-)
G81524 NA non-coding upstream 234255 12893939 ~ 12895846 (-)
G81528 NA non-coding upstream 306112 12965796 ~ 12998617 (-)
G81318 NA other downstream 165537 12445860 ~ 12447287 (-)
G81192 NA other downstream 538749 12073596 ~ 12074075 (-)
ero1b ero1b other downstream 832015 11766831 ~ 11780809 (-)
strn strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087 other downstream 981137 11536500 ~ 11631687 (-)
G80956 NA other downstream 1193494 11403644 ~ 11419330 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other upstream 4147 12663831 ~ 12667588 (-)
G81512 NA other upstream 158069 12817753 ~ 13057881 (-)
G81523 NA other upstream 230597 12890281 ~ 12896130 (-)
LOC122353859 NA other upstream 297177 12956861 ~ 12965633 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other upstream 324689 12984373 ~ 12989957 (-)

Expression


Co-expression Network