LOC122354272 (crtc1,LOC107747695,LOC107665843,LOC107553560,LOC107597189)


Basic Information

Item Value
gene id LOC122354272
gene name crtc1,LOC107747695,LOC107665843,LOC107553560,LOC107597189
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13876450 ~ 13886965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252432.1
CGCCGCGGCAGCGCGCAACGCATCTCGCGCAACGCTCTGTGTTTTGGAGAAGAACGGAAGATGGCGACCTCAAACAATCCGCGAAAATTCAGCGAGAAAATCGCCCTGCACAACCAGAAGCAGGCGGAGGAGACGGCGGCGTTCGAGGAGGTCATGAAAGACCTGAGCATCACGCGAGCGGCGCGGCTGCAGTTACAGAAGACCCAGTATTTGCAACTAGGCCAGAATCGAGCTCAGTGCTATGGAGGGTCACTGCCCAATGTCAATCAGATTGGAAATAGCAACACTGACCTCCCTTTTCAGACGACGGTTTTAGACACCAGTCGGACGTCCCGGCATCACGGCCTGGTGGACCGCGTGTATCGGGACAGGAATCGCATCGCTTCTCCACACCGCAGACCTCTCTCTGTGGACAAGCACGGACGCCAGATCGACAGCTGTCCCTATGGCTCGGTGTATCTGTCACCGCCTCCCGACACAAGCTGGAGAAGAACCAACTCTGACTCAGCTCTACACCAGAGCGCTGTGAATCCAGCTCCACAGGACGCTTTTGTTGGCGGATCTCAGGAACTGCAGTCGAAAGGAGTAAAAACGTTGCTGTTACTCACCCCTCCAGATACAGAGGACACCGAATCAGAGATGGAGAAAGACGAGCCCAAAGCATCTCTGCACACAGAGTCCTGTGACGTTCCTGGGATTAATATATTTCCATCTCCTGATCAAGAAATGAATAGCTCTTTGATGCCAGCTGCTCACAGCACCGGCGGCTCCTTACCTGATCTGACAAACATCCAGTTCCCTCCTCCTCTCCCCACCCCGCTGGATCCAGACGACCCCATTACCTTCCCTACATCCGGCTCCGGCAGTACCAGCAACCTGACCACCAACCTCACGCACCTGGGCATCAGTGCTGCCAGTCACGTCCCTCCATCCCCTCCCGCCCAGCACACAGGCCCCGGCCCCTCGTCCAGTATCAGCCCACAGCCGCCCACTCCCACGCTGCCACCCGCCGTCTCCCCCCAGATACCCATCGCGCAGCCGATCACGATGGACAGCCTGTCTCTGGAGCAGCAGCTGTCTCAGTACTCTCTGCTGAGTTTACTGAACGACCTGCAGAAACAGCCCCACAGCCTCCCTCAGAACATTCGTCTCATACGCCTCCCGCCTCTCACCGTAAGCTCCGCCCCCAACGCCACCCAGACCTCCCTCGCCAGCCAATCGCAGACAACCACAAGCGGAACTGCCAGCTCGTACCGCAGTCAGACCGGCTCTTCAGCCAATCAGTCACCAACATCTCCGGTGTCCAATCAGGGCTTCTCGCCCGGCGGCTCGCCACAACACATTCAGGTGGTGGGAAGCATCTTTGGAGATTCCTTTTATGATCAGCAACTTCCTTCCAGACAAACCAATGCTCTATCAAACCAGCTGGAGCAGTTCAACATGAACATGATGGAGAACCCGGGCGGCTCTAGTCACTGTTCAACGCTGAACTACACGCAGGCCGCCATGATGGGTCTCACCGGGAACCACGGCGGTCAGCAGGACTCACAGCAGCTCGGTTACAGTAGCCATGGCAACATCCCCAACATCATTCTCACAGTGACGGGAGAATCTCCGCCGAGTCTCTCCAAAGACCTCACCAGCTCGTTGGCCAGCGTCGGTGACGTCAGCTTCGACGCGGACTCTCAGTTCCCGCTGGACGAGCTGAAGATCGACCCCTTGACCCTGGACGGACTGCACATGCTCAACGACCCGGACATGGTTCTCGCCGACCCGGCCACCGAGGACACGTTCCGCATGGATCGACTGTGAAGCTGTGAACGCACTCCGAAGCCAGACACTCCGCTGCATGGCCTCTCTGTTCACCATCTGGTCAGTGGCCGGCCACGTCCCCCCAACCACCCACATAACAGCATGCTGCCGAACCGCTCATGGCCAGGGGCCGGTGGAGGCGGCGGCCAGGGGCCGGGGGCCAGGGTTTGGGGGGGGTGGTGGAGGTGGAAGTGCTGTATCCACACTGGATCGTTTCCAATGCGCAATACCATCCACCATCCACTCTCTTCACGTATTCATGTTATAACGTGCCGTTTCTATTTATTCCTTTTCGGTTGTTTCACCTTTTGATTTCACGGATCGTCCCGTGTTTATTAGTACATTTAAGTGAATTGCCAAATTTGAACGTTTACGTAACTATGCCATGTCTTTGAAGAAATATCCATCCGTGTGACGATGTGTGTGAAAAATCGACCTATTTATTtagattgtatttattatacttatttttttatgaatatatattatttaatcatacTTACGTAAGGAGCACTACTCCCCCAGATTGTGTATCAAGGGTTTAAGGGAGCGTTGCTCACTGTACGCCGGAAGGCAAAAAGTTTGCTTTTACAAAATGGCTTCCATGACGATTCGTTTTGCTAGCATTTTTCGTATCATCCAAATATCTCAAAAAACCGTGTTTCGGGTTTCATTCATTCGCTATCAGTTTTTCTTGCAGGAGGACAGCAGTCTCTAAATAGAAATGTGACCCATCTTTTGGCGTTTTCGTGGACTGTCGCGTGACTCTCTGTACGCATATGTTATTTATCCGAAATTGAAGGTCTGTTATGGCTGAAATGTACGCTTCAACGGCGGTCGGTAAATATGTGACCCTCGAGCTGCTGCAGAAACCTGCTGAACACTTCACTGTGAGAGGACCTGATTTTGCcttacatgaacaaaatgctgtttttaactgTTAACGTGTTTTTCTAATCGTTCTCCTCTCGATATTCTTGTTTTAACGATGCCATTTTGTTTAGTACTGAATGCTGTATAGTTTGTACTTGTACTGCCAAACTTAACTCAAGGTTTTGTCGTGAAGCTGA
>XM_043252433.1
CGCGCCGCGGCAGCGCGCAACGCATCTCGCGCAACGCTCTGTGTTTTGGAGAAGAACGGAAGATGGCGACCTCAAACAATCCGCGAAAATTCAGCGAGAAAATCGCCCTGCACAACCAGAAGCAGGCGGAGGAGACGGCGGCGTTCGAGGAGGTCATGAAAGACCTGAGCATCACGCGAGCGGCGCGGACGACGGTTTTAGACACCAGTCGGACGTCCCGGCATCACGGCCTGGTGGACCGCGTGTATCGGGACAGGAATCGCATCGCTTCTCCACACCGCAGACCTCTCTCTGTGGACAAGCACGGACGCCAGATCGACAGCTGTCCCTATGGCTCGGTGTATCTGTCACCGCCTCCCGACACAAGCTGGAGAAGAACCAACTCTGACTCAGCTCTACACCAGAGCGCTGTGAATCCAGCTCCACAGGACGCTTTTGTTGGCGGATCTCAGGAACTGCAGTCGAAAGGAGTAAAAACGTTGCTGTTACTCACCCCTCCAGATACAGAGGACACCGAATCAGAGATGGAGAAAGACGAGCCCAAAGCATCTCTGCACACAGAGTCCTGTGACGTTCCTGGGATTAATATATTTCCATCTCCTGATCAAGAAATGAATAGCTCTTTGATGCCAGCTGCTCACAGCACCGGCGGCTCCTTACCTGATCTGACAAACATCCAGTTCCCTCCTCCTCTCCCCACCCCGCTGGATCCAGACGACCCCATTACCTTCCCTACATCCGGCTCCGGCAGTACCAGCAACCTGACCACCAACCTCACGCACCTGGGCATCAGTGCTGCCAGTCACGTCCCTCCATCCCCTCCCGCCCAGCACACAGGCCCCGGCCCCTCGTCCAGTATCAGCCCACAGCCGCCCACTCCCACGCTGCCACCCGCCGTCTCCCCCCAGATACCCATCGCGCAGCCGATCACGATGGACAGCCTGTCTCTGGAGCAGCAGCTGTCTCAGTACTCTCTGCTGAGTTTACTGAACGACCTGCAGAAACAGCCCCACAGCCTCCCTCAGAACATTCGTCTCATACGCCTCCCGCCTCTCACCGTAAGCTCCGCCCCCAACGCCACCCAGACCTCCCTCGCCAGCCAATCGCAGACAACCACAAGCGGAACTGCCAGCTCGTACCGCAGTCAGACCGGCTCTTCAGCCAATCAGTCACCAACATCTCCGGTGTCCAATCAGGGCTTCTCGCCCGGCGGCTCGCCACAACACATTCAGGTGGTGGGAAGCATCTTTGGAGATTCCTTTTATGATCAGCAACTTCCTTCCAGACAAACCAATGCTCTATCAAACCAGCTGGAGCAGTTCAACATGAACATGATGGAGAACCCGGGCGGCTCTAGTCACTGTTCAACGCTGAACTACACGCAGGCCGCCATGATGGGTCTCACCGGGAACCACGGCGGTCAGCAGGACTCACAGCAGCTCGGTTACAGTAGCCATGGCAACATCCCCAACATCATTCTCACAGTGACGGGAGAATCTCCGCCGAGTCTCTCCAAAGACCTCACCAGCTCGTTGGCCAGCGTCGGTGACGTCAGCTTCGACGCGGACTCTCAGTTCCCGCTGGACGAGCTGAAGATCGACCCCTTGACCCTGGACGGACTGCACATGCTCAACGACCCGGACATGGTTCTCGCCGACCCGGCCACCGAGGACACGTTCCGCATGGATCGACTGTGAAGCTGTGAACGCACTCCGAAGCCAGACACTCCGCTGCATGGCCTCTCTGTTCACCATCTGGTCAGTGGCCGGCCACGTCCCCCCAACCACCCACATAACAGCATGCTGCCGAACCGCTCATGGCCAGGGGCCGGTGGAGGCGGCGGCCAGGGGCCGGGGGCCAGGGTTTGGGGGGGGTGGTGGAGGTGGAAGTGCTGTATCCACACTGGATCGTTTCCAATGCGCAATACCATCCACCATCCACTCTCTTCACGTATTCATGTTATAACGTGCCGTTTCTATTTATTCCTTTTCGGTTGTTTCACCTTTTGATTTCACGGATCGTCCCGTGTTTATTAGTACATTTAAGTGAATTGCCAAATTTGAACGTTTACGTAACTATGCCATGTCTTTGAAGAAATATCCATCCGTGTGACGATGTGTGTGAAAAATCGACCTATTTATTtagattgtatttattatacttatttttttatgaatatatattatttaatcatacTTACGTAAGGAGCACTACTCCCCCAGATTGTGTATCAAGGGTTTAAGGGAGCGTTGCTCACTGTACGCCGGAAGGCAAAAAGTTTGCTTTTACAAAATGGCTTCCATGACGATTCGTTTTGCTAGCATTTTTCGTATCATCCAAATATCTCAAAAAACCGTGTTTCGGGTTTCATTCATTCGCTATCAGTTTTTCTTGCAGGAGGACAGCAGTCTCTAAATAGAAATGTGACCCATCTTTTGGCGTTTTCGTGGACTGTCGCGTGACTCTCTGTACGCATATGTTATTTATCCGAAATTGAAGGTCTGTTATGGCTGAAATGTACGCTTCAACGGCGGTCGGTAAATATGTGACCCTCGAGCTGCTGCAGAAACCTGCTGAACACTTCACTGTGAGAGGACCTGATTTTGCcttacatgaacaaaatgctgtttttaactgTTAACGTGTTTTTCTAATCGTTCTCCTCTCGATATTCTTGTTTTAACGATGCCATTTTGTTTAGTACTGAATGCTGTATAGTTTGTACTTGTACTGCCAAACTTAACTCAAGGTTTTGTCGTGAAGCTGA

Function

symbol description
crtc1 Enables cAMP response element binding protein binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol; nuclear body; and plasma membrane.

NR:

description
PREDICTED: CREB-regulated transcription coactivator 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252432.1 True 2882 mRNA 0.53 12 13876452 13886965
XM_043252433.1 False 2767 mRNA 0.53 11 13876450 13886965

Neighbor

gene id symbol gene type direction distance location
klhl26 klhl26,LOC107680559,LOC107597147,LOC107747058,LOC107553559,LOC107665842 coding upstream 942 13867446 ~ 13875508 (+)
rab3ab rab3a,rab3ab,LOC107553558,LOC107680521,LOC107665838,LOC107597148 coding upstream 17522 13845967 ~ 13858928 (+)
pde4cb crtc1b,LOC107747102,LOC107680520,LOC107757940,LOC107665846,LOC107553556 coding upstream 31583 13791839 ~ 13844867 (+)
LOC122353752 NA coding upstream 86045 13777335 ~ 13790405 (+)
LOC122353909 LOC107680549,LOC107597153,LOC107757943,LOC107685118 coding upstream 227760 13638952 ~ 13648690 (+)
LOC122353757 NA coding downstream 351141 14238106 ~ 14239596 (+)
LOC122353760 NA coding downstream 435549 14322514 ~ 14325121 (+)
ap1s2 ap1s2,LOC105893284,LOC107602789,LOC107665854,LOC107732206,LOC108438658,LOC107656112 coding downstream 476610 14363575 ~ 14367175 (+)
rbb4l rbb4l,rbbp7,LOC107753839,LOC107562083,LOC107656110,LOC108438657,LOC105893332,LOC103023991,LOC107730765 coding downstream 486925 14373890 ~ 14381533 (+)
rtel1 rtel1,LOC107723052,LOC107753877,LOC107665833,LOC107562060 coding downstream 506935 14393900 ~ 14409239 (+)
G81711 NA non-coding upstream 14960 13860971 ~ 13861490 (+)
G81708 NA non-coding upstream 90589 13785629 ~ 13785861 (+)
G81704 NA non-coding upstream 93688 13782496 ~ 13782762 (+)
G81699 NA non-coding upstream 99984 13776170 ~ 13776466 (+)
G81484 NA non-coding upstream 134339 13702878 ~ 13742111 (+)
G81724 NA non-coding downstream 238867 14125832 ~ 14133969 (+)
G81726 comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 non-coding downstream 380640 14267605 ~ 14309847 (+)
G81732 NA non-coding downstream 484341 14371306 ~ 14372370 (+)
G81749 NA non-coding downstream 563065 14450030 ~ 14450234 (+)
G81750 NA non-coding downstream 564374 14451339 ~ 14451746 (+)
LOC122353915 vmac,LOC107680554,LOC107685109,LOC107757942 other upstream 171475 13701235 ~ 13704975 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other upstream 411034 13460464 ~ 13465416 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other upstream 466324 13402287 ~ 13410126 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other upstream 492607 13374021 ~ 13383843 (+)
G81434 NA other upstream 645358 13228943 ~ 13231092 (+)
G81717 NA other downstream 368 13887333 ~ 14306577 (+)
G81722 NA other downstream 134825 14021790 ~ 14030101 (+)
LOC122353763 NA other downstream 465335 14352300 ~ 14354705 (+)
ptgfr ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835 other downstream 578927 14465892 ~ 14468603 (+)
zfyve9b zfyve9b,LOC107753830,LOC107656105,LOC107562066,LOC107723065,LOC107665831 other downstream 585601 14472566 ~ 14488809 (+)

Expression


Co-expression Network