G81711


Basic Information

Item Value
gene id G81711
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13860971 ~ 13861490 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120942
GCCGGATCCACCACCTCTCCCAGGTCCGCCTCCTCTGCCTTTTCCCTGTGGCTTGTTCTGCTGCATGCCCCCTCGGCCGCGTCCCTTTGACATAACTTCCTCTTTCACCATATCTATGATCTCGTCGGGGATTCGCAAGTATTTAATCGTGCTTCCTCTGATGTAGCATTCCGGCATCCTCCAAAATTTATCTCCATCCTGCAAATCAGAGCAGGCAGAAACAACCATTGCAGTCGCGGAGGCGAAATCCACGACGGCTCAAACATGTTTACGCGATCAAAAATGCTTCATCCAGTTGTCACAGCTGACCAGATGGCCGTTGTACGTCTCGCCGTTCTTTAACTCCACCAgctgaaaacaaaagcagactgaccatcagctgtttggactcccattccgacggcacccattcactgcagaggacccatTTCTCCACATCTACTCTGTGAACTACTAC

Function

GO:

id name namespace
GO:0061695 transferase complex, transferring phosphorus-containing groups cellular_component
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0055029 nuclear DNA-directed RNA polymerase complex cellular_component
GO:0000428 DNA-directed RNA polymerase complex cellular_component
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0030880 RNA polymerase complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
TU120942 True 457 lncRNA 0.51 2 13860971 13861490

Neighbor

gene id symbol gene type direction distance location
rab3ab rab3a,rab3ab,LOC107553558,LOC107680521,LOC107665838,LOC107597148 coding upstream 2043 13845967 ~ 13858928 (+)
pde4cb crtc1b,LOC107747102,LOC107680520,LOC107757940,LOC107665846,LOC107553556 coding upstream 16104 13791839 ~ 13844867 (+)
LOC122353752 NA coding upstream 70566 13777335 ~ 13790405 (+)
LOC122353909 LOC107680549,LOC107597153,LOC107757943,LOC107685118 coding upstream 212281 13638952 ~ 13648690 (+)
LOC122353911 zgc:162969,LOC107680475,LOC107747135,LOC107597149,LOC107757941 coding upstream 256895 13601397 ~ 13604076 (+)
klhl26 klhl26,LOC107680559,LOC107597147,LOC107747058,LOC107553559,LOC107665842 coding downstream 5956 13867446 ~ 13875508 (+)
LOC122354272 crtc1,LOC107747695,LOC107665843,LOC107553560,LOC107597189 coding downstream 14960 13876450 ~ 13886965 (+)
LOC122353757 NA coding downstream 376616 14238106 ~ 14239596 (+)
LOC122353760 NA coding downstream 461024 14322514 ~ 14325121 (+)
ap1s2 ap1s2,LOC105893284,LOC107602789,LOC107665854,LOC107732206,LOC108438658,LOC107656112 coding downstream 502085 14363575 ~ 14367175 (+)
G81708 NA non-coding upstream 75110 13785629 ~ 13785861 (+)
G81704 NA non-coding upstream 78209 13782496 ~ 13782762 (+)
G81699 NA non-coding upstream 84505 13776170 ~ 13776466 (+)
G81484 NA non-coding upstream 118860 13702878 ~ 13742111 (+)
G81479 NA non-coding upstream 248296 13610603 ~ 13612675 (+)
G81724 NA non-coding downstream 264342 14125832 ~ 14133969 (+)
G81726 comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 non-coding downstream 406115 14267605 ~ 14309847 (+)
G81732 NA non-coding downstream 509816 14371306 ~ 14372370 (+)
G81749 NA non-coding downstream 588540 14450030 ~ 14450234 (+)
G81750 NA non-coding downstream 589849 14451339 ~ 14451746 (+)
LOC122353915 vmac,LOC107680554,LOC107685109,LOC107757942 other upstream 155996 13701235 ~ 13704975 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other upstream 395555 13460464 ~ 13465416 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other upstream 450845 13402287 ~ 13410126 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other upstream 477128 13374021 ~ 13383843 (+)
G81434 NA other upstream 629879 13228943 ~ 13231092 (+)
G81717 NA other downstream 25843 13887333 ~ 14306577 (+)
G81722 NA other downstream 160300 14021790 ~ 14030101 (+)
LOC122353763 NA other downstream 490810 14352300 ~ 14354705 (+)
ptgfr ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835 other downstream 604402 14465892 ~ 14468603 (+)
zfyve9b zfyve9b,LOC107753830,LOC107656105,LOC107562066,LOC107723065,LOC107665831 other downstream 611076 14472566 ~ 14488809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G15682 LOC106573909 non-coding NC_048565.1 CM023219.2 16918993 ~ 16920932 (-)