G15682 (LOC106573909)


Basic Information

Item Value
gene id G15682
gene name LOC106573909
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16918993 ~ 16920932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU18397
GTTTTTTATGACTGAGCGCCAAACTTGGAGAACAAAATTCTGTTAAAGTGCTACATAACTTTGATATCCAGGGTCATATTCTTCAAGAAAGAGATGTGGCACATTGGTCTCATAACATTTATGGGACACTAAACCAGTGCTTAGGGAGTTTGGTAttgaaaaacacttttttttgccTGATACAAATATTTCAGAGGTAGAGAAACCATCTCCTCATAATTTCCACCAACCCATTGTCAAATAACTACCATGCATTTTACATTTTCAATTGAAGCTAGCTTTTCATGCAAATTAAAGTGAGAATGTTTTTTTCCAGAGCTTCATGTTTTAACTGAAACTAACAGCGATTATGTTCCATTCTGATTCATTTCAAAACAGCCACAAGACATGCAAGACTACAGTAATAAAACTCATAGAACAGCATCATAAATCAGTCACCATCTCACGTGATATTTAACTCCATGAATTATAGCGTCATGTTAATCAGGGCTGCATTATTGCTGATTCAGCAGCTGTGTGATTGCGGTTGTGCTTTAGGGGGCTAGAGAAAGGGTTACACCAGCTTTGTTATATGCATGCTTGATTGTTTATGTTGACTTTTTATTTTTATAGCTGGTTAGTTATACAAGAACATAAACCTGCCATGCAAATTGTGTTTTGTCATTTTAGAGGTAAGCTAGCATGAGCGTAGCAAAATACCTTTTCATTATGTATGTAGACCCATTCAAAACAAATCCAATAGTTATTGTTCTTTCATACATTCAAGTACAGTATActtaacaaaacatttattctcaTGTTATTTTGTATAGGCTAAATTACAACATTATTGTCTCATGTTGCAATTTGCAAATAAACTCcacaaaagtaaaacatttagAAACCCCCAATTGGGACTCTGAAAATAAACTGCCAGACTTCTTGACATTTCTTTAACCAACTAGGTATTATTCCTCATAACACAATCAACTTAAGTCTTCAAATTCCAAGGGCATAAAATGGATGCCAAAAATGGGTGCTTTACATAGCTTATATTACACTGAAGACAATTGGGTACAATCAACGTAGTCGATTGCTCTGGGCACAATAAAACAATAACATTGAACTTCTCAAATTTCGGTTACTGTTGAGTTCTTGTGGACGATAATTACATGTTTCTGACGGTGGCCCAAATTGAAAACTAAACAAAAACTTTAAGGCAAAAATCTGTCTACAAAACCCTGCCCTTTCTGAACTGCACAGAATATTCATAGTTCTCACGTTGTGATTTCACAAATTGGTGGAGGTCAAACACAAATGACTAAGAAATGGCAGTGAGGGAGCAGTAATAGCCATTACAACAGCCATTGTGTAAGGTGACCTCCACTGACTGATAGAGTTGTCATTCTGTGAAAACTACACTCGTTCCTTACATTTGAcctgtctgttcctctcctcaGTGCTGGTTCTTGACTCCCTGAGGTTTGCCACCAGCAGGCTTCTTCTCCTGCTGCTGGCCTCTGCCCACTCCTGGCATTCCCACTCCTGGCATGCCCCGACCACGGCCTCCAAAAACACCTCTGCCTGCTCCTCCCCCTCGACCCTTGCCCTGCTGTTTGTTCTGCTGCATGCCTCCTCGCCCACGGCCCTTGGACACCACCTCTTCCTTCACCATGTCAATGATCTCATCAGGGATACGCAGGTACTTTATGGTGCTTCCTCTGATGTAACACTCAGGCATCCTCCAAAATTTATCTCCATCCTAAACGATGGGAGCGAATGGGATAAGGGGAGAGTTTCAGCA

Function

NR:

description
U6 snRNA-associated Sm-like protein LSm4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18397 True 1783 lncRNA 0.36 2 16918993 16920932

Neighbor

gene id symbol gene type direction distance location
LOC110492528 LOC106573908 coding downstream 2557 16909202 ~ 16916436 (-)
LOC110492327 LOC106573910 coding downstream 14017 16884927 ~ 16904976 (-)
LOC110492105 homer3 coding downstream 47001 16838135 ~ 16871992 (-)
LOC110492040 arrdc2 coding downstream 104229 16804630 ~ 16814764 (-)
LOC118941412 LOC106573916 coding downstream 192386 16723231 ~ 16726607 (-)
rab3ab LOC106573906 coding upstream 22647 16943579 ~ 16961077 (-)
LOC110493631 LOC106573903 coding upstream 216084 17137016 ~ 17140392 (-)
LOC110493506 LOC106573900 coding upstream 219590 17140522 ~ 17173207 (-)
LOC110493215 LOC106573896 coding upstream 252470 17173402 ~ 17220957 (-)
comp LOC106573894 coding upstream 393552 17314484 ~ 17326759 (-)
G15667 NA non-coding downstream 12579 16906183 ~ 16906414 (-)
G15621 NA non-coding downstream 62763 16855639 ~ 16856230 (-)
G15594 LOC100136537 non-coding downstream 91400 16826059 ~ 16827593 (-)
G15589 NA non-coding downstream 120748 16798015 ~ 16798245 (-)
G15588 NA non-coding downstream 121624 16797034 ~ 16797369 (-)
G15690 NA non-coding upstream 7713 16928645 ~ 16928849 (-)
G15696 NA non-coding upstream 10709 16931641 ~ 16931859 (-)
G15718 NA non-coding upstream 11508 16932440 ~ 16932712 (-)
G15737 NA non-coding upstream 43590 16964522 ~ 16964888 (-)
G15742 NA non-coding upstream 51197 16972129 ~ 16972363 (-)
G15470 NA other downstream 387517 16531047 ~ 16531476 (-)
LOC110531395 LOC106613616 other downstream 702697 16181514 ~ 16295527 (-)
LOC110488740 cdc14a other downstream 1578112 15325555 ~ 15394233 (-)
LOC110488330 LOC106613586 other downstream 1735451 15175297 ~ 15183693 (-)
G16100 LOC106573897 other upstream 210488 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 334304 17255236 ~ 17257241 (-)
LOC110497564 LOC106573866 other upstream 1168948 18089520 ~ 18098678 (-)
LOC110497762 LOC106573859 other upstream 1469191 18390123 ~ 18450517 (-)
mydgf LOC106573827 other upstream 1955945 18876547 ~ 18888907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G245467 NA non-coding CI01000057 null 4455149 ~ 4457859 (+)
bowfin (Amia calva) G96992 NA non-coding CM030132.1 CM030132.1 7364383 ~ 7364984 (+)
tiger barb (Puntius tetrazona) G81711 NA non-coding NC_056709.1 CM032078.1 13860971 ~ 13861490 (+)
tiger barb (Puntius tetrazona) tomm7 NA misc NW_025048355.1 JAEQBD010000700.1 1536021 ~ 1541873 (+)