atp5f1b (atp5b,LOC102199207,LOC100693141)


Basic Information

Item Value
gene id atp5f1b
gene name atp5b,LOC102199207,LOC100693141
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14532740 ~ 14536364 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252559.1
GCTATATATAAGCTGTCGAGCCTCTGCCCCGTTCCACCTTCAGCCATTTTAACGATGTTGGGAGCTGTGGGACGCTGCTGCACCGGGGCTCTGCAAGCTCTCAAGCCCGGGGTGACCCCCCTGAAGGCTCTCAACGGAGCTCCGGCTCTGTTTTCTCgCAGGGATTATGCCGCTCCTGCCGCAGCTGCCGCCGCCGCCAGCGGGCGTATCGTCGCGGTCATCGGCGCCGTTGTGGACGTCCAGTTCGACGAGGGTCTGCCTCCCATTCTCAATGCCCTGGAAGTGAGCGGCCGTGACAGCAGGCTAGTCCTGGAGGTGGCTCAGCATCTGGGCGAGAACACCGTCCGCACCATCGCTATGGATGGTACTGAGGGACTGGTGCGTGGCCAGAAGGTTCTTGACACCGGTGCTCCCATCAGAATCCCTGTGGGACCTGAGACTCTTGGCAGGATCATGAATGTCATCGGTGAACCCATTGACGAGAGAGGACCAATTAGCACAAAACAGACTGCCCCCATCCATGCCGAGGCCCCAGAATTCACAGACATGAGTGTCGAGCAGGAGATTCTGGTCACAGGAATCAAGGTCGTAGATCTGCTGGCACCCTATGCCAAGGGTGGCAAGATTGGTCTTTTCGGTGGCGCTGGTGTGGGAAAGACCGTATTGATTATGGAGCTGATCAACAACGTGGCCAAGGCTCATGGTGGTTACTCAGTGTTCGCCGGCGTGGGAGAGAGAACCCGTGAGGGAAACGATCTCTACCATGAGATGATCGAGTCTGGCGTCATCAACCTGAAGGACACCACCTCAAAGGTGGCTCTGGTGTACGGACAGATGAACGAGCCCCCAGGTGCCCGTGCCCGTGTGGCTCTGACTGGACTGACCGTTGCTGAATATTTCCGTGACCAGGAGGGACAGGATGTGCTGCTCTTCATCGACAACATTTTCCGCTTCACCCAAGCCGGATCAGAGgtgTCTGCCTTGCTGGGCCGTATCCCCTCCGCTGTGGGTTATCAGCCAACTCTGGCCACTGACATGGGTACCATGCAGGAAAGAATCACCACAACCAAGAAGGGTTCGATCACATCTGTGCAGGCCATCTATGTGCCTGCTGATGACTTGACTGATCCCGCCCCTGCCACCACTTTCGCTCACTTGGACGCCACCACCGTGTTGTCCCGTGCCATTGCTGAGCTGGGCATCTACCCCGCTGTGGACCCTCTGGACTCCACTTCCCGTATCATGGACCCCAACATTGTGGGATCTGAGCATTACGACGTAGCCCGTGGCGTGCAGAAGATCCTCCAGGACTACAAGTCCCTGCAGGATATCATTGCTATTCTGGGTATGGATGAGTTGTCTGAGGAGGACAAGCTAACTGTGGCTCGTGCACGTAAGATCCAGAGGTTCCTGTCCCAGCCCTTCCAAGTCGCCGAGGTCTTCACTGGACACTTGGGAAAGCTGGTGCCCCTGAAAGACACCATTAAAGGCTTCAAGTCTATTTTGGGTGGTGAGTATGATGCTTTGCCCGAGCAGGCTTTCTACATGGTGGGCCCCATCGAGGAGGTCGTCCAGAAGGCAGAGAAGCTGGCCGAGGAGCACTCGTAAATGAGTCTGTTTAAACGTGTTAGGGTGGGTTCAATAGAGGAGGAGCACTTGGTTTGTAACGtcacattcaaaaacaaattgtATCTTTATCGCTGGTCATTCTGAAGTTATTTAATGTTTCCAATTTGTgaagatggaaataaaaaaactgtcttACCGTGAA

Function

symbol description
atp5b Predicted to enable several functions, including adenyl ribonucleotide binding activity; angiostatin binding activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within cellular response to interleukin-7; lipid metabolic process; and negative regulation of cell adhesion involved in substrate-bound cell migration. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; eye; heart; and integumental system. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

NR:

description
PREDICTED: ATP synthase subunit beta, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG:

id description
K02133 ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252559.1 True 1771 mRNA 0.55 10 14532740 14536364

Neighbor

gene id symbol gene type direction distance location
LOC122354141 NA coding upstream 493 14527668 ~ 14532247 (+)
mknk1 mknk1,LOC107753831,LOC107723060,LOC107655971,LOC107602795 coding upstream 5213 14519910 ~ 14527527 (+)
mob3c mob3c,LOC107576341,LOC107572948,LOC107753835,LOC107723061,LOC107656107,LOC108270829 coding upstream 13321 14513695 ~ 14519419 (+)
btf3l4 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107655993,LOC107562065 coding upstream 60643 14468907 ~ 14472097 (+)
LOC122353764 LOC107723054 coding upstream 92930 14417383 ~ 14439810 (+)
abcb11b abcb11,abcb11b,LOC107692229,LOC107602798,LOC108438644,LOC105911976,LOC108270741 coding downstream 2960 14539324 ~ 14555353 (+)
il12rb1 LOC107572942 coding downstream 56751 14593115 ~ 14603371 (+)
homer3b LOC107656098,LOC107572947,LOC107753825,LOC107692231,LOC107723860 coding downstream 68824 14605188 ~ 14620660 (+)
arrdc2 arrdc2,LOC107753823,LOC107692233,LOC107723859,LOC107656095,LOC107602802 coding downstream 87487 14623851 ~ 14631819 (+)
si:ch211-1a19.3 LOC107656094,LOC107723855,LOC107753891,LOC107692240 coding downstream 120952 14657316 ~ 14661282 (+)
G81753 NA non-coding upstream 35700 14493236 ~ 14497040 (+)
G81736 NA non-coding upstream 39711 14490705 ~ 14493029 (+)
G81752 NA non-coding upstream 47477 14485025 ~ 14485263 (+)
G81750 NA non-coding upstream 80994 14451339 ~ 14451746 (+)
G81749 NA non-coding upstream 82506 14450030 ~ 14450234 (+)
G81762 NA non-coding downstream 249 14536613 ~ 14618947 (+)
G81763 NA non-coding downstream 963 14537327 ~ 14537789 (+)
G81782 NA non-coding downstream 97744 14634108 ~ 14637259 (+)
G82017 NA non-coding downstream 570547 15106911 ~ 15108103 (+)
G82024 slc39a3 non-coding downstream 590283 15126647 ~ 15129620 (+)
zfyve9b zfyve9b,LOC107753830,LOC107656105,LOC107562066,LOC107723065,LOC107665831 other upstream 43931 14472566 ~ 14488809 (+)
ptgfr ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835 other upstream 64137 14465892 ~ 14468603 (+)
LOC122353763 NA other upstream 178035 14352300 ~ 14354705 (+)
G81717 NA other upstream 226163 13887333 ~ 14306577 (+)
palm1a palm,palm1a,LOC107656088,LOC107674557,LOC107723854,LOC107753814,LOC107593145 other downstream 288043 14824407 ~ 14855872 (+)
G82072 LOC107753843,LOC107680456,LOC107562070,LOC107718864,LOC107563489 other downstream 744615 15280979 ~ 15282157 (+)
LOC122354546 abcc10,LOC107753844,LOC107680503,LOC107674523,LOC107718869,LOC107680501 other downstream 770288 15306652 ~ 15331632 (+)
hap1 si:dkey-28e7.3,LOC107680538,LOC107674537,LOC107718874,LOC107753848,LOC107564818,LOC107562051 other downstream 852702 15389066 ~ 15400192 (+)
col9a1a col9a1a,LOC107674561,LOC107563512,LOC107753862,LOC107680514,LOC107718896,LOC108438673 other downstream 920518 15456882 ~ 15491776 (+)

Expression


Co-expression Network