trnai-aau_27


Basic Information

Item Value
gene id trnai-aau_27
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2783733 ~ 2783806 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1676
ggccggttagctcagttggttagagcgtggtgctaataacgccaaggtcgcgggttcgaccccAGTACGGGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1676 True 74 tRNA 0.61 1 2783733 2783806

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_26 NA coding downstream 87 2783569 ~ 2783646 (-)
trnai-aau_26 NA coding downstream 3053 2780607 ~ 2780680 (-)
trnai-aau_25 NA coding downstream 4628 2779032 ~ 2779105 (-)
trnai-aau_24 NA coding downstream 6187 2777474 ~ 2777546 (-)
trnaf-gaa_25 NA coding downstream 6355 2777300 ~ 2777378 (-)
trnap-cgg_6 NA coding upstream 737 2784543 ~ 2784614 (-)
trnaf-gaa_27 NA coding upstream 1342 2785148 ~ 2785220 (-)
trnaf-gaa_28 NA coding upstream 2904 2786710 ~ 2786787 (-)
trnai-aau_28 NA coding upstream 3068 2786874 ~ 2786946 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding upstream 24178 2807984 ~ 2811364 (-)
G78773 NA non-coding downstream 83004 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 86261 2697228 ~ 2697472 (-)
G78769 NA non-coding downstream 87036 2696409 ~ 2696697 (-)
G78756 NA non-coding downstream 295897 2487484 ~ 2487836 (-)
LOC122354525 NA non-coding downstream 298805 2483670 ~ 2484928 (-)
G78774 NA non-coding upstream 11216 2795022 ~ 2795296 (-)
LOC122354391 NA non-coding upstream 15727 2799533 ~ 2800028 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding upstream 295208 3079014 ~ 3079668 (-)
G78854 NA non-coding upstream 330491 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 439929 3223735 ~ 3241319 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 1067604 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 1086946 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 1523643 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 1808946 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1989597 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 29546 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 35782 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 53477 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 54435 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 55041 2838847 ~ 2838919 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnai-aau_25 NA coding NC_047622.1 CM018568.1 11783809 ~ 11783882 (+)
mexican tetra (Astyanax mexicanus) trnai-aau_25 NA misc NW_019171985.1 APWO02001583.1 110574 ~ 110647 (+)