jmjd4 (jmjd4,LOC107558017,LOC107727502,LOC107711689,LOC107671663,LOC107593877,LOC107661902,LOC107661892,LOC107727496)


Basic Information

Item Value
gene id jmjd4
gene name jmjd4,LOC107558017,LOC107727502,LOC107711689,LOC107671663,LOC107593877,LOC107661902,LOC107661892,LOC107727496
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3338145 ~ 3343544 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13745
attttttaaacattttattttaaagtgtcaacTAAAACACTCATCGGATTTCTGTGTGAAAGttaaagatttcattttttttaaattaactaaataaatattcgTTCAGGTGAGCCTTTGATCTTTCTAGTGTTGATTattctttgctgttttttggCCACCAGTCAGGTACGGTGGCCTGTAAAGTCACGGTCACGCCATCGGAGGACTTCAGCTTTAGCGTCTCTTTGGCATGAGCCAATCGTACGAGGCTCAACCCCAGCGTGTCGATCCCTGCCCTGTGTTTCCCAGCCGGTTTACCCCCCTCGGTCTCTAGAGCGGCTCCTTGCTCCAGGGTCTCAGCCGGAGCAGACATGGTAACGGGCATCAGGCGCTTTCGTATCACACCAGTGTGGTGAGTTCTGGCAGTCAGCTCCTGGCCGAGGTAGCATCCCTTGCTGAAGTTAATTCCCTGCATGTAGACGAGGTTAGACTCCAGAGGAAGGGCCTCACCTGGCGGAAGATCTTTCACTCCTTCAGGCAGTCCTGTAGAAACCGATTTTATATCGATGTCTGTGGTATTCTTCAGTGTGGCCCTCCTGACAGGCAGAGACGATCTCATGTGGGTTCTCCTGGCAGCTACTGATCATTCTCCAGCCCATGAGTTCAGTTCTTGGGTCCTGCTCCAGTACTAACACTTTATCAGCCGCAGCGACCTCCGGCTTCGACCGCTCCGCCACGCCAGCTTTGCTTTGAGGCAACAGAGCCCACACCGAGAGAGCGGGACACGAGCTGAACTCTACCTTGCGACGTATCTTGTAAACCTTCAGAAGCCGCATAATGGCGTCCCGTACAGTGCTGTCACACTCCAGGAGCACGCCGTTAAACCCATCCGGGTTTCCT
>XM_043263668.1
cacacacatatataacgTGGCGATGGCTAATTAGGGGCATCGACTTAGATTTATTTACAGGCTATTTAATGATATTTGCTTTTCGTATTATACAGCTCTTTTTTACGCACGGAGAAAAGCAAATCCTTGGGTTGGTGTGCACACGTTTCTTTTCCGGTGGGAAACTAGGTAGACATGTTCCAAGCCTGGCGCAGAAaagctaattattatttataagcaTATAGAACAAGATATTCGACTCGCATCGATAATTTAAACACATGTAAGCGTGACGTTAAATCGTCGATACGTCAGTTGCCCTTCTGCAGCCTAAAATAGCCACGAAAAGCTGTAATGGGAGAAGCATGAGGTTAACAGAATGTGTTCTGCTATCAAGTCAGCACcattgagttttatttttaacattgcatCAAGCATGCAATAACATGTGGAAACTTCGTGTTAGTGACTAGGTAAGCGTAAAGAAGGCTGAGCTCCATTCTGACATGTCATGGATAGGGAAACCTTTCATAACTGCTGCAGTCTGGTCAAAATGCCCAGGCAGGTCCAGCAGCACTGCTCCTCTCATTTCATTGAGTACATAGAGAGAGAAATACCCTACTCCAAATTCTTCAAGAACTACTTGATCTCGAACCAGCCGTGCATGTTCTCCAAAAGATTCACAGAAGACTGGAACTGCAAAAAATGGGTCACGGCTGAAGGAAAACCTAATTTGCAAAGACTTCTTCAAGAGTTTGATGAGACTCCTGTTCCTGTTGCAAACTGCAGTGCGAAAGAATACAACTCCAACCCAAAGCAGATCATGCCTCTTAAGGAGTTTATCCAGTACTGGAGAGAGTACATACAGAATGGCCATTCTTCACCCAAAGGATGTCTTTACTTAAAGGACTGGCATATGCAACGgaACTTTCCTGAACATAATGCTTACAAGACCCCGATTTActtctcttctgattggctgaatgaATATTGGGACACAATTGAAGTGGACGATTATCGCTTTGTCTACATGGGACCCAAGGGCTCATGGACACCTTTCCATGCAGACGTGTTTCGCTCGTACAGTTGGTCTGCCAACATCTGTGGACGTAAGAAGTGGCTCCTGTACCCTCCCGGCCAAGAGGAGTTTCTGCGGGACTGTCACGGCAACTTGGCCTATGACGTCACAGCACCCGTACTTCAAGACAAGGGCCTGTATCCACAGTTCGAAGAGGCCTGTCAGCCTTTAGAGATCATCCAAGAAGCTGGGGAGATCATCTTTGTACCTAGCGGTTGGCATCATCAGGTTTACAATTTGGAGGATACCATTTCCATCAATCATAACTGGCTGAACGGCTGTAATTTGGATATCACGTGGCAGTTTCTCCAAGAAGAGCTTTCTTCTGTCCAGAGAGAAATCGAGGAATGGCGTGATACTATGGATACCTGGCATCAGCATTGTCAGGTGATCATGAAATCGTGCACAGGAATCGATTATGGGGAGTTCGCCTCTTTCCTTAAGACTATTGCAAATAACcgaatgttctttttaaattcatgtcCCAGAAATGCAGATAGTTGCCAAGAACACCTTGCCGAAAGTCTGTGTGCTTTAGGCCCTCAGCACGCGGCCTTCGACCTTCAGAGAGTATTGCATATATTTGAGAGCATGCTTAGCAACGAAGACTTCAAGAGACTAGACCCTTCGGCTCTGAGCTTCAAACCAGAGGAGCTGCTTCAGGAGATCAGAGAGGCTGTTCGAACTATTGTATAAACGCTGTACTGTATGTGAAAGATCGGCTATGGCGGATGCTCATAAATTCTTTTAACAGCACATTCGTGTTCTTTAATTAACTGTTCGATTGTCGTTATACTTTTATGACAAACGGTGTTGGGGAGTTACTTTTAAAACGTACTTTATTGTTATTTGGCGTTTCAAAAACGAATAAGCCTCAGGCTAATCAATATCGCTCAACATGGCaacttatttgaaaaaagtaacaCTAATATggaaaagtaatgcattactagttacttgaaaaagtaaCCTGATTATTTAACTCGCATTACCCCAACACTGATGAAAAATAGCACGCAAACTTGGACTTCTCTATTAAAGATGTCAACATGCTCCTTCCAGTTCTATTCAATTTTAGTAAAACCGATAAAACCCGTTTAgtagagttttatttattttttcagtaattgCTTTATGTTTTACGTATCATCAGAATAAGCTTTgatttatggtttgttaggaaaGGACAATATTTGTCAGAGACGCAGCTGAAGTATTGAGAAAGTGGCCTTTAAAAaactgtccaaatgaagttcttagcaatgcatactaATCAAAATCAAACgacctttacttaatatcctataaaagaaaaatctatcattttgacccataaaatgtattgttaaataTGTGCATCTTCTAATTGTTGGGATACATTTCAAATatccatttaattaaacaacacaacattttttaaacattttattttaaagtgtcaacTAAAACACTCATCGGATTTCTGTGTGAAAGttaaagatttcattttttttaaattaactaaataaatattcgTTCAGGTGA

Function

symbol description
jmjd4 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in positive regulation of translational termination and protein hydroxylation. Predicted to be located in cytoplasm. Orthologous to human JMJD4 (jumonji domain containing 4).

NR:

description
PREDICTED: jmjC domain-containing protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13745 False 882 lncRNA 0.51 2 3338145 3340096
XM_043263668.1 True 2581 mRNA 0.40 7 3339984 3343544

Neighbor

gene id symbol gene type direction distance location
greb1l greb1l,LOC107727544,LOC107661895,LOC107671732,LOC107711675,LOC107593831,LOC107558001 coding downstream 36697 3255319 ~ 3301448 (-)
ro60 trove2,LOC107661896,LOC107671649,LOC107579204 coding downstream 106221 3222880 ~ 3231924 (-)
cdc73 cdc73,LOC107671721,LOC107661897,LOC107593758 coding downstream 116594 3199967 ~ 3221551 (-)
prtfdc1b prtfdc1,LOC107671666,LOC105891346,LOC106569196 coding downstream 215696 3111807 ~ 3122449 (-)
arhgap21b arhgap21b,LOC107593760,LOC107658691,LOC107711711,LOC107671689 coding downstream 233269 3064736 ~ 3104876 (-)
wnt9a wnt9a,LOC107727550,LOC106599874,LOC107711706,LOC107558013,LOC107671764 coding upstream 67695 3411239 ~ 3441295 (-)
c2h1orf35 zgc:63882,LOC107711702,LOC107558012,LOC107671736 coding upstream 164582 3508126 ~ 3514128 (-)
LOC122355162 ipp coding upstream 180235 3523779 ~ 3533856 (-)
pik3r3a pik3r3,LOC107593753,LOC107711700,LOC107661887,LOC107671741,LOC107574784 coding upstream 192930 3536474 ~ 3543831 (-)
LOC122324860 LOC107671680,LOC107711685 coding upstream 220099 3563643 ~ 3573120 (-)
G9116 LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878 non-coding downstream 2265 3331645 ~ 3335880 (-)
G9072 NA non-coding downstream 273542 3063110 ~ 3064603 (-)
G9071 NA non-coding downstream 276805 3060770 ~ 3061340 (-)
G9070 LOC107658692,LOC107727490,LOC107593833 non-coding downstream 277629 3059191 ~ 3060516 (-)
G9067 NA non-coding downstream 286640 3049021 ~ 3051505 (-)
G9201 NA non-coding upstream 156837 3500381 ~ 3500839 (-)
G9212 NA non-coding upstream 219384 3562928 ~ 3563309 (-)
G9190 NA non-coding upstream 238396 3581940 ~ 3584122 (-)
G9217 NA non-coding upstream 319655 3663199 ~ 3693207 (-)
G9268 NA non-coding upstream 441965 3785509 ~ 3790348 (-)
G9115 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 other downstream 25231 3310965 ~ 3312914 (-)
G9089 gpr158b,LOC107727549,LOC107661898,LOC107593759,LOC107711710,LOC107671743,LOC107558004 other downstream 173321 3158834 ~ 3164824 (-)
prkag2b prkag2b,LOC107559383,LOC107711714,LOC107671734,LOC108430764,LOC107727488 other downstream 524657 2785758 ~ 2813488 (-)
anxa13l anxa13l,anxa13,LOC107681706,LOC107727547,LOC107559374,LOC107671694 other downstream 740300 2591627 ~ 2597845 (-)
G8931 slc35a3b,LOC107559354,LOC107671667,LOC107593843 other downstream 797163 2531836 ~ 2540982 (-)
thoc1 thoc1,LOC107727519,LOC107711694,LOC107660399,LOC107671701 other upstream 320853 3664397 ~ 3673250 (-)
higd1a higd1a,LOC107660422,LOC107708608,LOC107593748,LOC107671688,LOC107580039 other upstream 542538 3886082 ~ 3917688 (-)
G9466 NA other upstream 999886 4343430 ~ 4349997 (-)
LOC122357070 LOC107705116,LOC107671550,LOC107671683,LOC107562856,LOC107708586,LOC100331077,LOC108424938 other upstream 1037454 4380998 ~ 4398364 (-)
G9557 LOC107563086,LOC107671725,LOC107724048,LOC107745889,LOC107685282 other upstream 1455698 4799242 ~ 4800643 (-)

Expression


Co-expression Network