ptbp2b (ptbp2,ptbp2b,LOC107718150,LOC103030091,LOC108442283,LOC107570490)


Basic Information

Item Value
gene id ptbp2b
gene name ptbp2,ptbp2b,LOC107718150,LOC103030091,LOC108442283,LOC107570490
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9321702 ~ 9333327 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218021.1
CTCGGCTATGTTCGGGTGTTTCCGTGAATAACAGACTCTCCATTTTGCATAGTTACGCGCGTGTGTTGAAGGCTCCTCTGCTCCTGCGATCGGTATCACACCGTGAAGATCGTTTTCCCTGCAATGGACGGcaTTGCAAGTGATGTTGCAGTTGGTGTGAAGAGAAGCTCAGATGATTTGCTGTCTGGCAGTCTGTACAACAGTCCAAACTCTTCAGTCACTGCTAATGGAAGTGACAGTAAGAAACTGAGGGTGGAGGACAGCATGGACAGCCCACCATCCAGAGTCATTCATATCCGGAAACTCCCCAATGAGGTTTCCGAGACTGAGGTCATCGCCCTGGGTTTGCCCTTCGGAAAGGTCACTAATATCCTGATGCTTAAAGGCAAAAATCAGGCATTTTTGGAGCTAGGAACAGAGGAAGCAGCTGTTACCATGGTGAACTACTACACAGCTGTTACACCTCAAGTGCGTAATGTCCCAGTGTTCATTCAGTACTCCAACCACAAAGAGCTCAAGACTGACAGTGCGCTCAATCAGCGAGCTCAGGCCGTGCTGCAGGCGGTGTCCGCTGTCCAGGAGGGTGGCTCTCCAAGCTCAGCGGCTGGCGAGAGTGTGTTAACGCCTGCCCCCAGCCCAGTACTGCGAATAATCATTGACAACATGTTCTACCCAGTCACCCTGGACGTCCTCCAACAGATCTTCTCCAAGTTTGGGACCGTCATGAAGATAATCACATTTACCAAAAATAATCAGTTCCAGGCTCTTCTGCAGTTCAGTGACCCAGTAAATGCCCAGCAGGCCAAACTGTCCTTGGATGGCCAGAACATATACAACTCCTGCTGCACCTTACGCATTGACTTCTCCAAGCTGGTCAAccttaatgtaaaatacaacaaCGACAAAAGCCGGGATTACACCCGGCCCGAGCTGCCCGCAGGAGACGGTCAACCGCCCGTGGACCCGTCTGTGGCCGCCACTCTCAGCAAAGATTCCACCTCCCTGCTCGGTACTCCCTCTGGAATGGTAACTTCCTACTCTAGTGGTGGAGGGTTTCCATCTTCTCTAGGGGCCATCAGCCCTCTGAGTGCAGCggcagcggcggcggcggcagcaGGGAGGGTGGCGTTGTCTGGACATTCGGGGCCTGGCGGAGTGCTCCTGGTCAGCAACCTCAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTCTACGGTGACGTGCAGCGCGTGAAGATCCTTTACAATAAGAAGGACAGTGCTCTAATCCAGATGTCTGATGGAAACCAAGCTCAGTTAGCCATGAGCCATCTGAACGGGCAGAAGATGTATGGCAAGATCATTCGCGTGACCCTCTCCAAACACCAGACGGTACAGCTGCCCAGGGAGGGTTTAGATGATCAGGGCCTGACCAAGGACTTCACAAGTTCTCCTCTGCATCGCTTCAAGAAGCCAGGGTCCAAAAACTTTCAGAACATCTTCCCCCCTTCAGCTACTCTCCATCTCTCTAACATACCTGAGAATGTGACAGAGGAGGATTTACGACTGCTCTTCTCAAATTCCGGCGGTACAGTGAAAGCATTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGCTGCAGATGTCCACAGTGGAGGAGGCGATTCAGTCACTCATTGACCTTCACAACTACGACATGGGCCGTGGCCACCGCCTGAGAGTGTCCTTCTCAAAGTCCACCATCTGAGGATCCACCGGTGCCATGtcaccttttctctctctctctccccccagAGCCTCAAGTCGAATTAATTTTTACCAGTCATTCCTTAACACCATATCAAGAACTTCAATGAGAATGACCCTTAAAGGAAGACTCGCTCTGTATCTGCTCCTACTATTGTTTGTGTATGGCCAGCTGTTATTCTGTTTTAGGATGGATTGACAAAAATGTGCCTTACTTAGCAAAATAGCATCATCCCTTTGCTCCCATTGTTACACTTTATAGAGGTTTAGGCACATTATGTGTGATGATACAGAAAACTTAACCttgctttgttgttttgatgGGATTTGAAAGTGATAGTTTTCACTCTTGCCTCAACGTGGCCTcaccttgcttttttttttttttttttttttttcctttttaaaccAATTCAATTGAAGCTTTGAAAGCTAGTAGGTTTGCTTTGATTCAAAGgcaaaagctcttttttttatgatctaATGAATTGAATCTGAACACAAGTAACTGAATTTGATGGAACATACTCCAAGTTGTAAATTATcttgtgcatttgttttattttgggctgtagtgtattttattttgttctttgatCAGGCACCCAAGGTACTTTTGTGATTGAAACCTGTGGtaaacaaaacactgacagTGGGGAGCGCAGTGTGTGACGTATAGTACCTGCTTTGATATCTCATTCACTTTTGCTTCAGTGAATTGTTacccagtttttcttttttgttttttttttttagatgaaaatcAGAGCATGTGCTGATGGATCTCGGCAGTTGCATGTGTCAGGTTGACCATGTTTGATGTTGTGATGTCACTTTAATGTAGGGACTGTTGGGACCAAAGTAAATGTGCCTTTAGTCTTACTTTATTCTACattgtacaaaatgttttattcaaccTCTGGAATATTTTTatcaacagcaaaaaaaacaaaaactgacatCACTcataaatgataattattaattgtCCTTAATCGTGGTTGTATGAGAATCATTCAGTGATTCTACtgaaaaatgacatgttttttgtGGTGTAGGCCTGGGGAAAAAAAGGGGAGGGGGTGTTCTGTACATTTTCTACATAAATTGAGTTTTTACATCTTTAGGAATGTAAAGTTCGGTATAGAAGCGGCACAATTAAAGGTTCTTTTTTCTACCAAGCTTGTGCTTGACGGTCCCTGTGTGGTGTAGTGCTTTTATCCTGTAGCATGCTGAATAAACTCTTCTCGCTCTGCATTCA
>XM_043218030.1
CTCGGCTATGTTCGGGTGTTTCCGTGAATAACAGACTCTCCATTTTGCATAGTTACGCGCGTGTGTTGAAGGCTCCTCTGCTCCTGCGATCGGTATCACACCGTGAAGATCGTTTTCCCTGCAATGGACGGcaTTGCAAGTGATGTTGCAGTTGGTGTGAAGAGAAGCTCAGATGATTTGCTGTCTGGCAGTCTGTACAACAGTCCAAACTCTTCAGTCACTGCTAATGGAAGTGACAGTAAGAAACTGAGGGTGGAGGACAGCATGGACAGCCCACCATCCAGAGTCATTCATATCCGGAAACTCCCCAATGAGGTTTCCGAGACTGAGGTCATCGCCCTGGGTTTGCCCTTCGGAAAGGTCACTAATATCCTGATGCTTAAAGGCAAAAATCAGGCATTTTTGGAGCTAGGAACAGAGGAAGCAGCTGTTACCATGGTGAACTACTACACAGCTGTTACACCTCAAGTGCGTAATGTCCCAGTGTTCATTCAGTACTCCAACCACAAAGAGCTCAAGACTGACAGTGCGCTCAATCAGCGAGCTCAGGCCGTGCTGCAGGCGGTGTCCGCTGTCCAGGAGGGTGGCTCTCCAAGCTCAGCGGCTGGCGAGAGTGTGTTAACGCCTGCCCCCAGCCCAGTACTGCGAATAATCATTGACAACATGTTCTACCCAGTCACCCTGGACGTCCTCCAACAGATCTTCTCCAAGTTTGGGACCGTCATGAAGATAATCACATTTACCAAAAATAATCAGTTCCAGGCTCTTCTGCAGTTCAGTGACCCAGTAAATGCCCAGCAGGCCAAACTGTCCTTGGATGGCCAGAACATATACAACTCCTGCTGCACCTTACGCATTGACTTCTCCAAGCTGGTCAAccttaatgtaaaatacaacaaCGACAAAAGCCGGGATTACACCCGGCCCGAGCTGCCCGCAGGAGACGGTCAACCGCCCGTGGACCCGTCTGTGGCCGCCACTCTCAGCAAAGATTCCACCTCCCTGCTCGGGGCCATCAGCCCTCTGAGTGCAGCggcagcggcggcggcggcagcaGGGAGGGTGGCGTTGTCTGGACATTCGGGGCCTGGCGGAGTGCTCCTGGTCAGCAACCTCAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTCTACGGTGACGTGCAGCGCGTGAAGATCCTTTACAATAAGAAGGACAGTGCTCTAATCCAGATGTCTGATGGAAACCAAGCTCAGTTAGCCATGAGCCATCTGAACGGGCAGAAGATGTATGGCAAGATCATTCGCGTGACCCTCTCCAAACACCAGACGGTACAGCTGCCCAGGGAGGGTTTAGATGATCAGGGCCTGACCAAGGACTTCACAAGTTCTCCTCTGCATCGCTTCAAGAAGCCAGGGTCCAAAAACTTTCAGAACATCTTCCCCCCTTCAGCTACTCTCCATCTCTCTAACATACCTGAGAATGTGACAGAGGAGGATTTACGACTGCTCTTCTCAAATTCCGGCGGTACAGTGAAAGCATTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGCTGCAGATGTCCACAGTGGAGGAGGCGATTCAGTCACTCATTGACCTTCACAACTACGACATGGGCCGTGGCCACCGCCTGAGAGTGTCCTTCTCAAAGTCCACCATCTGAGGATCCACCGGTGCCATGtcaccttttctctctctctctccccccagAGCCTCAAGTCGAATTAATTTTTACCAGTCATTCCTTAACACCATATCAAGAACTTCAATGAGAATGACCCTTAAAGGAAGACTCGCTCTGTATCTGCTCCTACTATTGTTTGTGTATGGCCAGCTGTTATTCTGTTTTAGGATGGATTGACAAAAATGTGCCTTACTTAGCAAAATAGCATCATCCCTTTGCTCCCATTGTTACACTTTATAGAGGTTTAGGCACATTATGTGTGATGATACAGAAAACTTAACCttgctttgttgttttgatgGGATTTGAAAGTGATAGTTTTCACTCTTGCCTCAACGTGGCCTcaccttgcttttttttttttttttttttttttcctttttaaaccAATTCAATTGAAGCTTTGAAAGCTAGTAGGTTTGCTTTGATTCAAAGgcaaaagctcttttttttatgatctaATGAATTGAATCTGAACACAAGTAACTGAATTTGATGGAACATACTCCAAGTTGTAAATTATcttgtgcatttgttttattttgggctgtagtgtattttattttgttctttgatCAGGCACCCAAGGTACTTTTGTGATTGAAACCTGTGGtaaacaaaacactgacagTGGGGAGCGCAGTGTGTGACGTATAGTACCTGCTTTGATATCTCATTCACTTTTGCTTCAGTGAATTGTTacccagtttttcttttttgttttttttttttagatgaaaatcAGAGCATGTGCTGATGGATCTCGGCAGTTGCATGTGTCAGGTTGACCATGTTTGATGTTGTGATGTCACTTTAATGTAGGGACTGTTGGGACCAAAGTAAATGTGCCTTTAGTCTTACTTTATTCTACattgtacaaaatgttttattcaaccTCTGGAATATTTTTatcaacagcaaaaaaaacaaaaactgacatCACTcataaatgataattattaattgtCCTTAATCGTGGTTGTATGAGAATCATTCAGTGATTCTACtgaaaaatgacatgttttttgtGGTGTAGGCCTGGGGAAAAAAAGGGGAGGGGGTGTTCTGTACATTTTCTACATAAATTGAGTTTTTACATCTTTAGGAATGTAAAGTTCGGTATAGAAGCGGCACAATTAAAGGTTCTTTTTTCTACCAAGCTTGTGCTTGACGGTCCCTGTGTGGTGTAGTGCTTTTATCCTGTAGCATGCTGAATAAACTCTTCTCGCTCTGCATTCA

Function

symbol description
ptbp2b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system; cranial ganglion; retinal ganglion cell layer; and retinal inner nuclear layer. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).
ptbp2 Enables RNA binding activity. Involved in negative regulation of RNA splicing. Predicted to be integral component of membrane. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: polypyrimidine tract-binding protein 2 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218021.1 True 2997 mRNA 0.46 15 9321702 9333327
XM_043218030.1 False 2937 mRNA 0.46 14 9321702 9333327

Neighbor

gene id symbol gene type direction distance location
rwdd3 rwdd3 coding upstream 36030 9281355 ~ 9285672 (+)
LOC122324815 hccsa.1,LOC107594665,LOC107710606,LOC107700523 coding upstream 40408 9277763 ~ 9281294 (+)
si:dkey-10f21.4 tmem56,si:dkey-10f21.4,LOC107710631,LOC107730492,LOC107570488 coding upstream 44226 9255385 ~ 9277476 (+)
abcd3b abcd3b,abcd3,LOC107564533,LOC107730494,LOC107680052,LOC106590647 coding upstream 73411 9239632 ~ 9248291 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding upstream 141395 9173853 ~ 9180307 (+)
plppr4a plppr4,plppr4a,LOC107722652,LOC107589875,LOC107718168,LOC107682771 coding downstream 189701 9523028 ~ 9539523 (+)
palmda palmd,LOC107722597,LOC107693751,LOC107677747,LOC107589899 coding downstream 220904 9554231 ~ 9562237 (+)
si:ch211-153l6.6 LOC107722596,LOC107693750,LOC107594655 coding downstream 229904 9563231 ~ 9570989 (+)
agla agl,LOC107722579 coding downstream 244728 9578055 ~ 9600236 (+)
si:ch73-14h1.2 NA coding downstream 270861 9604188 ~ 9606195 (+)
G10466 NA non-coding upstream 105038 9215505 ~ 9216664 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding upstream 263843 9057090 ~ 9057859 (+)
G10445 NA non-coding upstream 265457 9055723 ~ 9056245 (+)
G10433 NA non-coding upstream 380516 8939969 ~ 8941186 (+)
G10431 NA non-coding upstream 391629 8929504 ~ 8930073 (+)
G10557 NA non-coding downstream 121039 9454366 ~ 9454745 (+)
G10571 NA non-coding downstream 152850 9486177 ~ 9572793 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding downstream 243844 9577171 ~ 9577406 (+)
G10604 NA non-coding downstream 269039 9602366 ~ 9603843 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 492288 9825615 ~ 9826220 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 149787 9162611 ~ 9171915 (+)
G10212 NA other upstream 1213925 8106865 ~ 8107777 (+)
G10108 NA other upstream 1739317 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 2021601 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2215910 7098303 ~ 7105792 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 413243 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 578301 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 825205 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1329402 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 1377803 10711130 ~ 10718194 (+)

Expression


Co-expression Network