LOC122324815 (hccsa.1,LOC107594665,LOC107710606,LOC107700523)


Basic Information

Item Value
gene id LOC122324815
gene name hccsa.1,LOC107594665,LOC107710606,LOC107700523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9277763 ~ 9281294 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219496.1
ACTGTTATATAGCGGCTAATCTTTCATTAGCGATATCTTGAGCGTGTCATTTTAACAAAGGGCAATATAAACAATCTCAAGTGTTAAAAACGCCGTATGGGCAGACAGCTGATGGGAGACACTATGTCCAGCCCTACAGTGAAGGCAGAGGGCATCATGGTGCCAGATTTGGGCAGCACACCTCCACAAGGCTGTCCGATGCATCGAGACATTAATAAAAGTGCCCCTCCACCAGAATGTCCTATGCATCAGGCACCTGCACCTGCGGGTGAGAAGCTAAGGAAAGAGCCAGATGTTCCAGCACATCAGGACAGGGCTTATGAATTTGTAGAGTGTCCTATGAAAGCTGCCAATGGGGCTAAACCCACAATGTCTGACATCAATCCAGCAAATATGATGCCACCGCCTAACCAGCAACCTTCGCCTGGCCAGCCGTTTTCGCTTTCTGTTGTAAGAGAGGAATCGACCATCCCTCGTGCTGGATCTGAGCAGAAGTGGGTTTATCCCTCGGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAGGATGACGTCAACCAGAAAGATATGTCAAACATCATCAGGATTCACAACCAGAATAATGAGCAAGCCTGGCAGGAAATCCTGAGATGGGAGAAGCTCCATTCCAAAGAATGCCCGTGTGGACCTTCTCTTTTAAGGTTTGGTGGAAAAGCAAAAGACTTTTCTCCCAGAGCCAGATTTCGCCACTGGATGGGGCACGAGCTACCGTTTGACAGGCATGACTGGATTATTGACCGGTGTGGAAAAGAGGTCAGATATGTGATAGACTACTACGATGGAGGCCAGGTGGCCAAGCACACTATCCTTGATGTGCGTCCAGCTTTTGATTCTTTAGGAGCTGTTTGGGATCGTATGAAAGTGGCCTGGTGGCGTTGGACCTCCACATGAATGCTCTTTTGTGATCTTTAGGACATACTTGAACtgatatttatttagcttaatCAGTGGAAGCGttttttttgacatgttttCTGTTGTAAATGAATATGCAATGACCTTAACTCATATTCCTGTGATGAATTTGGTAAGTACATATAGTCAAgacaataaaaatggcaaaactgcTATAGTGGCACTGTGTGCTGTTGTAGGCATACAGTGTCACACAActgaaaatgcatctttttgtACACTACATCTAGCGAAACATCTTTTAATAGTGTTATGAAGGCaggtgtgtaaaataaaatgtaaagtacgATTTTTAGAACTGATGTTGACAGATACGTTTTGCagccttgttttatttacagtgttaACCATCCAAAATGACAACGACTGCATAAATAGGCAGATAcgtgttttattagttttccaATTTACTGCTGCTTTGTTGCTTAGCAGTTATTGATTTTTACCATGATTatgttgtttaaaacaaaatgcaaagatGAAGCAATTAACTCTGCAGGACTGAAATCAGATAAAGTCAAGCAAGAACACATGTTTTTGGtgtgtaaattaattttcttttaaagctgtAATTTGTAATTGAGCTTCCCAGTAATTCTGCTGTACAATAAACTCATCTATGAATGAGAAA
>XM_043219505.1
acacacacacacacacacacacacacacacacacacacacacacacacactgcgtgACGCAATCGCCCAGAGCATCATGGGATATGAGGCATGTTTCTAGTGAACGACATTGACAGTAGAGGTGGGAGCTGATGGGAGACACTATGTCCAGCCCTACAGTGAAGGCAGAGGGCATCATGGTGCCAGATTTGGGCAGCACACCTCCACAAGGCTGTCCGATGCATCGAGACATTAATAAAAGTGCCCCTCCACCAGAATGTCCTATGCATCAGGCACCTGCACCTGCGGGTGAGAAGCTAAGGAAAGAGCCAGATGTTCCAGCACATCAGGACAGGGCTTATGAATTTGTAGAGTGTCCTATGAAAGCTGCCAATGGGGCTAAACCCACAATGTCTGACATCAATCCAGCAAATATGATGCCACCGCCTAACCAGCAACCTTCGCCTGGCCAGCCGTTTTCGCTTTCTGTTGTAAGAGAGGAATCGACCATCCCTCGTGCTGGATCTGAGCAGAAGTGGGTTTATCCCTCGGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAGGATGACGTCAACCAGAAAGATATGTCAAACATCATCAGGATTCACAACCAGAATAATGAGCAAGCCTGGCAGGAAATCCTGAGATGGGAGAAGCTCCATTCCAAAGAATGCCCGTGTGGACCTTCTCTTTTAAGGTTTGGTGGAAAAGCAAAAGACTTTTCTCCCAGAGCCAGATTTCGCCACTGGATGGGGCACGAGCTACCGTTTGACAGGCATGACTGGATTATTGACCGGTGTGGAAAAGAGGTCAGATATGTGATAGACTACTACGATGGAGGCCAGGTGGCCAAGCACACTATCCTTGATGTGCGTCCAGCTTTTGATTCTTTAGGAGCTGTTTGGGATCGTATGAAAGTGGCCTGGTGGCGTTGGACCTCCACATGAATGCTCTTTTGTGATCTTTAGGACATACTTGAACtgatatttatttagcttaatCAGTGGAAGCGttttttttgacatgttttCTGTTGTAAATGAATATGCAATGACCTTAACTCATATTCCTGTGATGAATTTGGTAAGTACATATAGTCAAgacaataaaaatggcaaaactgcTATAGTGGCACTGTGTGCTGTTGTAGGCATACAGTGTCACACAActgaaaatgcatctttttgtACACTACATCTAGCGAAACATCTTTTAATAGTGTTATGAAGGCaggtgtgtaaaataaaatgtaaagtacgATTTTTAGAACTGATGTTGACAGATACGTTTTGCagccttgttttatttacagtgttaACCATCCAAAATGACAACGACTGCATAAATAGGCAGATAcgtgttttattagttttccaATTTACTGCTGCTTTGTTGCTTAGCAGTTATTGATTTTTACCATGATTatgttgtttaaaacaaaatgcaaagatGAAGCAATTAACTCTGCAGGACTGAAATCAGATAAAGTCAAGCAAGAACACATGTTTTTGGtgtgtaaattaattttcttttaaagctgtAATTTGTAATTGAGCTTCCCAGTAATTCTGCTGTACAATAAACTCATCTATGAATGAGAAA
>XM_043219513.1
CTGATGGGAGACACTATGTCCAGCCCTACAGTGAAGGCAGAGGGCATCATGGTGCCAGATTTGGGCAGCACACCTCCACAAGGCTGTCCGATGCATCGAGACATTAATAAAAGTTACATTTCAAATGCAGCTTATGTCGAGTCGCAGGTCAGCCGAAACTCGACTGCAAACACGCATATAGCTGTGGCTGGAAGTCAgtgatttgaattattattttagaaacagaaatgttaaaaagaaaaaaaaaaactctgttcatctgaaagtcatatacaccttgGATAGCTTGGAGCGGGGGTGCCCCTCCACCAGAATGTCCTATGCATCAGGCACCTGCACCTGCGGGTGAGAAGCTAAGGAAAGAGCCAGATGTTCCAGCACATCAGGACAGGGCTTATGAATTTGTAGAGTGTCCTATGAAAGCTGCCAATGGGGCTAAACCCACAATGTCTGACATCAATCCAGCAAATATGATGCCACCGCCTAACCAGCAACCTTCGCCTGGCCAGCCGTTTTCGCTTTCTGTTGTAAGAGAGGAATCGACCATCCCTCGTGCTGGATCTGAGCAGAAGTGGGTTTATCCCTCGGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAGGATGACGTCAACCAGAAAGATATGTCAAACATCATCAGGATTCACAACCAGAATAATGAGCAAGCCTGGCAGGAAATCCTGAGATGGGAGAAGCTCCATTCCAAAGAATGCCCGTGTGGACCTTCTCTTTTAAGGTTTGGTGGAAAAGCAAAAGACTTTTCTCCCAGAGCCAGATTTCGCCACTGGATGGGGCACGAGCTACCGTTTGACAGGCATGACTGGATTATTGACCGGTGTGGAAAAGAGGTCAGATATGTGATAGACTACTACGATGGAGGCCAGGTGGCCAAGCACACTATCCTTGATGTGCGTCCAGCTTTTGATTCTTTAGGAGCTGTTTGGGATCGTATGAAAGTGGCCTGGTGGCGTTGGACCTCCACATGAATGCTCTTTTGTGATCTTTAGGACATACTTGAACtgatatttatttagcttaatCAGTGGAAGCGttttttttgacatgttttCTGTTGTAAATGAATATGCAATGACCTTAACTCATATTCCTGTGATGAATTTGGTAAGTACATATAGTCAAgacaataaaaatggcaaaactgcTATAGTGGCACTGTGTGCTGTTGTAGGCATACAGTGTCACACAActgaaaatgcatctttttgtACACTACATCTAGCGAAACATCTTTTAATAGTGTTATGAAGGCaggtgtgtaaaataaaatgtaaagtacgATTTTTAGAACTGATGTTGACAGATACGTTTTGCagccttgttttatttacagtgttaACCATCCAAAATGACAACGACTGCATAAATAGGCAGATAcgtgttttattagttttccaATTTACTGCTGCTTTGTTGCTTAGCAGTTATTGATTTTTACCATGATTatgttgtttaaaacaaaatgcaaagatGAAGCAATTAACTCTGCAGGACTGAAATCAGATAAAGTCAAGCAAGAACACATGTTTTTGGtgtgtaaattaattttcttttaaagctgtAATTTGTAATTGAGCTTCCCAGTAATTCTGCTGTACAATAAACTCATCTATGAATGAGAAA

Function

symbol description
hccsa.1 Predicted to enable holocytochrome-c synthase activity. Predicted to be involved in cytochrome c-heme linkage. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 1 and microphthalmia. Orthologous to human HCCS (holocytochrome c synthase).

NR:

description
PREDICTED: cytochrome c-type heme lyase-like isoform X1

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0004408 holocytochrome-c synthase activity molecular_function

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219496.1 False 1600 mRNA 0.42 7 9277904 9281294
XM_043219505.1 False 1620 mRNA 0.43 7 9277763 9281294
XM_043219513.1 True 1677 mRNA 0.42 7 9278427 9281294

Neighbor

gene id symbol gene type direction distance location
si:dkey-10f21.4 tmem56,si:dkey-10f21.4,LOC107710631,LOC107730492,LOC107570488 coding upstream 287 9255385 ~ 9277476 (+)
abcd3b abcd3b,abcd3,LOC107564533,LOC107730494,LOC107680052,LOC106590647 coding upstream 29472 9239632 ~ 9248291 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding upstream 97456 9173853 ~ 9180307 (+)
col11a1b col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694 coding upstream 123329 9087694 ~ 9154434 (+)
vav3b vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269 coding upstream 348453 8890773 ~ 8929310 (+)
rwdd3 rwdd3 coding downstream 61 9281355 ~ 9285672 (+)
ptbp2b ptbp2,ptbp2b,LOC107718150,LOC103030091,LOC108442283,LOC107570490 coding downstream 40408 9321702 ~ 9333327 (+)
plppr4a plppr4,plppr4a,LOC107722652,LOC107589875,LOC107718168,LOC107682771 coding downstream 241734 9523028 ~ 9539523 (+)
palmda palmd,LOC107722597,LOC107693751,LOC107677747,LOC107589899 coding downstream 272937 9554231 ~ 9562237 (+)
si:ch211-153l6.6 LOC107722596,LOC107693750,LOC107594655 coding downstream 281937 9563231 ~ 9570989 (+)
G10466 NA non-coding upstream 61099 9215505 ~ 9216664 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding upstream 219904 9057090 ~ 9057859 (+)
G10445 NA non-coding upstream 221518 9055723 ~ 9056245 (+)
G10433 NA non-coding upstream 336577 8939969 ~ 8941186 (+)
G10431 NA non-coding upstream 347690 8929504 ~ 8930073 (+)
G10557 NA non-coding downstream 173072 9454366 ~ 9454745 (+)
G10571 NA non-coding downstream 204883 9486177 ~ 9572793 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding downstream 295877 9577171 ~ 9577406 (+)
G10604 NA non-coding downstream 321072 9602366 ~ 9603843 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 544321 9825615 ~ 9826220 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 105848 9162611 ~ 9171915 (+)
G10212 NA other upstream 1169986 8106865 ~ 8107777 (+)
G10108 NA other upstream 1695378 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1977662 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2171971 7098303 ~ 7105792 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 465276 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 630334 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 877238 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1381435 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 1429836 10711130 ~ 10718194 (+)

Expression


Co-expression Network