RNA id: XM_043219496.1


Basic Information

Item Value
RNA id XM_043219496.1
length 1600
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122324815
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9277763 ~ 9281294 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGTTATATAGCGGCTAATCTTTCATTAGCGATATCTTGAGCGTGTCATTTTAACAAAGGGCAATATAAACAATCTCAAGTGTTAAAAACGCCGTATGGGCAGACAGCTGATGGGAGACACTATGTCCAGCCCTACAGTGAAGGCAGAGGGCATCATGGTGCCAGATTTGGGCAGCACACCTCCACAAGGCTGTCCGATGCATCGAGACATTAATAAAAGTGCCCCTCCACCAGAATGTCCTATGCATCAGGCACCTGCACCTGCGGGTGAGAAGCTAAGGAAAGAGCCAGATGTTCCAGCACATCAGGACAGGGCTTATGAATTTGTAGAGTGTCCTATGAAAGCTGCCAATGGGGCTAAACCCACAATGTCTGACATCAATCCAGCAAATATGATGCCACCGCCTAACCAGCAACCTTCGCCTGGCCAGCCGTTTTCGCTTTCTGTTGTAAGAGAGGAATCGACCATCCCTCGTGCTGGATCTGAGCAGAAGTGGGTTTATCCCTCGGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAGGATGACGTCAACCAGAAAGATATGTCAAACATCATCAGGATTCACAACCAGAATAATGAGCAAGCCTGGCAGGAAATCCTGAGATGGGAGAAGCTCCATTCCAAAGAATGCCCGTGTGGACCTTCTCTTTTAAGGTTTGGTGGAAAAGCAAAAGACTTTTCTCCCAGAGCCAGATTTCGCCACTGGATGGGGCACGAGCTACCGTTTGACAGGCATGACTGGATTATTGACCGGTGTGGAAAAGAGGTCAGATATGTGATAGACTACTACGATGGAGGCCAGGTGGCCAAGCACACTATCCTTGATGTGCGTCCAGCTTTTGATTCTTTAGGAGCTGTTTGGGATCGTATGAAAGTGGCCTGGTGGCGTTGGACCTCCACATGAATGCTCTTTTGTGATCTTTAGGACATACTTGAACtgatatttatttagcttaatCAGTGGAAGCGttttttttgacatgttttCTGTTGTAAATGAATATGCAATGACCTTAACTCATATTCCTGTGATGAATTTGGTAAGTACATATAGTCAAgacaataaaaatggcaaaactgcTATAGTGGCACTGTGTGCTGTTGTAGGCATACAGTGTCACACAActgaaaatgcatctttttgtACACTACATCTAGCGAAACATCTTTTAATAGTGTTATGAAGGCaggtgtgtaaaataaaatgtaaagtacgATTTTTAGAACTGATGTTGACAGATACGTTTTGCagccttgttttatttacagtgttaACCATCCAAAATGACAACGACTGCATAAATAGGCAGATAcgtgttttattagttttccaATTTACTGCTGCTTTGTTGCTTAGCAGTTATTGATTTTTACCATGATTatgttgtttaaaacaaaatgcaaagatGAAGCAATTAACTCTGCAGGACTGAAATCAGATAAAGTCAAGCAAGAACACATGTTTTTGGtgtgtaaattaattttcttttaaagctgtAATTTGTAATTGAGCTTCCCAGTAATTCTGCTGTACAATAAACTCATCTATGAATGAGAAA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0004408 holocytochrome-c synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15580 lncRNA upstream 61240 9215505 ~ 9216664 (+) True G10466
TU15557 lncRNA upstream 220045 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 221659 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 336718 8939969 ~ 8941186 (+) True G10433
TU15539 lncRNA upstream 347831 8929504 ~ 8930073 (+) True G10431
TU15704 lncRNA downstream 173072 9454366 ~ 9454745 (+) True G10557
TU15718 lncRNA downstream 204883 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA downstream 204883 9486177 ~ 9510133 (+) False G10571
TU15733 lncRNA downstream 295877 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 321072 9602366 ~ 9603843 (+) True G10604
XM_043223752.1 mRNA upstream 428 9255385 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223748.1 mRNA upstream 428 9268755 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223743.1 mRNA upstream 428 9271426 ~ 9277476 (+) True si:dkey-10f21.4
XM_043221226.1 mRNA upstream 29613 9239632 ~ 9248291 (+) True abcd3b
XM_043254885.1 mRNA upstream 97597 9175210 ~ 9180307 (+) True tecrl2b
XM_043219524.1 mRNA downstream 61 9281355 ~ 9285672 (+) True rwdd3
XM_043219534.1 mRNA downstream 61 9281355 ~ 9285672 (+) False rwdd3
XM_043218021.1 mRNA downstream 40408 9321702 ~ 9333327 (+) True ptbp2b
XM_043218030.1 mRNA downstream 40408 9321702 ~ 9333327 (+) False ptbp2b
XM_043224544.1 mRNA downstream 241734 9523028 ~ 9539523 (+) True plppr4a
XR_006252402.1 other upstream 105989 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1170127 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1695519 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2290785 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2585529 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 465300 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 630334 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 630334 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1429836 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1958832 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile