RNA id: XR_006247735.1


Basic Information

Item Value
RNA id XR_006247735.1
length 1593
RNA type transcript
GC content 0.47
exon number 9
gene id znf414
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9911628 ~ 9916861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGCGTTCTCGCGATATTTCATGACGAACGTAACACACGTAGACAGTCTGGAAATACTGGGCAGCAAGATAACCGCTTTCATTTGTATTAGTGTCCGTGTTTAAAAAAGAAGCTTTGGAAACTGTGAGAAATCTATTCAAACTCGTGAGTCTGCTGTCTGTCTGCGCACGTCCCTGATTGTTTACGTTGGTCTGGCTGGAACAGGAACCATCTCACTATCTTAACTACAAACTATCACCATGGAGGGCTGCCAAATGTCCTGCTCGTTTTTTGGGTGCAAGAGGACCTACAATAGTCCGGAAGCACTGAATAGTCATCTTCAGGACCATCAAAAGAGCACTGCCCAGTCTCTTCCAGGGAAAACCTTCCTTTGCTCTCATATAGGATGTGATGGTTCATTCAACAACATGCAGCAGCTAATGGAACATATGAGGCACCATCACAAGCCAAATTATTTTTTCCTGTGCGAGAGCTGCAGGGCCAAACTGCGTTCTTACCGGACTCTTCTGAAACACCTGCAGACCTGCGCTAAAGTGGCTAAAAACAAGGCGGCAAAAATAGAGACTGGAATGACACCTGACGGAGATCCCGGCAATGTTCTGCTCTCCACTGACATGGAACCATCTGGACCCCTCTTGGCCTCAAACGCACCTGAGGAGATGGAGTCTATGCCCTCTTTGCCCACAAATCCAAGCATGCCAGTAACCCAGCGGCCCCTAGAAAACAACGCATTCGCTAACCCCATACCTGCAGGGCCTGTAACTGTGCCTCTTGCTACTTGTCCAGCCTCAAACCAAAACCTTCCTTACCAACCAGAATCCCCCTACAGCTCCTTTCCACCTACTCTGTCTCCTGTAAACCCAGCCTTCCAAGCAGATCTAGGCCTGCAGCAGCAGAGGTCTCCTAGGTCTGGTCCTCCCAGTCTGCCCGCTTCACCCCCCCTGCCGTCACCACCAGGATCAAACGCAGTTTGGAGGAAGAACCAAGACCCGCCCGGGCCCCTTTTGCACAGATGGAACTCTCCGAGCAGTCAAAGTTTAAATAGAGATGAAGTCCAGGTCAGTCCTTCAACTGCCGCATCCTGTGGGAGCACACAAGAGGTCGGTACAGCTGCCTACAGTGCGGCCACTGCACCCCAGACCGGGGGGAGATGACCGCTCACATTGAGGGCCAACACAAGAACCCGGGGGGGAAAATGAACAATGATCATGATACAGAGATTGCCACCGCATCTTTACTGGCTAAGACCTCACTAAACTCTGAGAACTCGACTTATACACAGCTCTAACATGAAATGAGATGCTAAACCTGCTGGATGACGCCGAATTTTTGTAGTAGTATTTTATACAGAGGGAGATGCTCGAGTTTTATTTCACCAACAGTGTGGACTTCAAGCGTCTGTGTTCTGGATCTGTCAATATCACTATTCAAACACATGGGGAGCTGCATGCCTTGTCTTTTAGTAAGCATTTATGAATCATCTAGACTAAGAAAATTTCTTGTTaggttttattaaacattttgaattgacatataaataaatacagtgatgTTGTAATGtcaactgctttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15857 lncRNA upstream 85408 9825615 ~ 9826220 (+) True G10674
TU15761 lncRNA upstream 307785 9602366 ~ 9603843 (+) True G10604
TU15733 lncRNA upstream 334222 9577171 ~ 9577406 (+) True G10581
TU15718 lncRNA upstream 338835 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA upstream 401495 9486177 ~ 9510133 (+) False G10571
TU15953 lncRNA downstream 72282 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA downstream 75923 9992784 ~ 9993395 (+) True G10749
TU15979 lncRNA downstream 95076 10011937 ~ 10014366 (+) True G10752
TU15980 lncRNA downstream 97698 10014559 ~ 10015822 (+) True G10753
TU16060 lncRNA downstream 141671 10058532 ~ 10063814 (+) True G10819
XM_043253543.1 mRNA upstream 54867 9851285 ~ 9856761 (+) True prrx1a
XM_043258980.1 mRNA upstream 105938 9781765 ~ 9805690 (+) True niban1b
XM_043261108.1 mRNA upstream 145302 9758179 ~ 9766326 (+) True ivns1abpb
XM_043261072.1 mRNA upstream 160417 9746570 ~ 9751211 (+) False arpc5a
XM_043261000.1 mRNA upstream 166520 9731529 ~ 9745108 (+) True pla2g4aa
XM_043221348.1 mRNA downstream 470 9917331 ~ 9927244 (+) False mllt1b
XM_043221366.1 mRNA downstream 470 9917331 ~ 9927244 (+) False mllt1b
XM_043221357.1 mRNA downstream 470 9917331 ~ 9927244 (+) False mllt1b
XM_043221376.1 mRNA downstream 470 9917331 ~ 9927244 (+) False mllt1b
XM_043221385.1 mRNA downstream 504 9917365 ~ 9927244 (+) True mllt1b
TU15832 other upstream 160416 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 739713 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1803851 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 2329243 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2924509 6986298 ~ 6987119 (+) True G9925
TU16308 other downstream 794269 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1323265 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1423002 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1579499 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1579499 11496360 ~ 11498937 (+) False mast3a

Expression Profile