RNA id: TU16565


Basic Information

Item Value
RNA id TU16565
length 791
RNA type TUCP
GC content 0.44
exon number 2
gene id mrpl34
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11339735 ~ 11341111 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGAGACACGAGACACAAGGCATGCGATGACTTTGGTGTGATATTGATGAAAGCTAAATCCGAAATGAACACGTTACGAACAACACTTTTGCGCATTTCTGGGGGACAGAGTTTGTGTCGGAGTAATGGCCCTAACTCAGCCGTATCCAGCTGCAGTCAGCTACGCTCTATCAGTTCCTTGCTTCTGTCACGGGCAGTAGCTGAGCAGAAGCCTGTCCTGCAAGGAACCCTGAACACCAAAGCAGAGGGAGTTTGTGTTTCCCAGCAGCCACTCTGGCAGCATCAACAGGTCCGCACAGTCAAACGTGGGACAGAGTATCAGCCGAAGAACATCAAACGAAAGAGGACCCATGGGTGGATCAAAAGAATTAGCACTCCAAGTGGGATCGAAGTAATCCTGCGCCGAATGCTCAAAGGACGAAAGTCTCTCACTCATTGATGCTCTGACCGGACACTGGCTTTGATGGGTCTTTGAAGTAAATCTCAGTTGAATGTCAGCTGTGCAGTAGAGCTTTTGAGTTTCTAGTGGGAATAattgtcaaattaaaacaatgcacaGTGGAGTCAATAGATGCCACTTCATTGGGtggtatttgtttttatttcagtttgatgGATCTTGTCCGTCTTCATACTTCCAGTTGAGCGTATTCATGTCAAAGTTTTTGGCGTGTTCTCAGATCAGGGGATTcacttttggattttttttaataacatcagCATACTTGTAAGTAATCAAAATAGGACAGGAAGTATAAGtgagagttgttgttttttttttaattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16563 lncRNA upstream 1394 11303678 ~ 11338469 (+) False fitm1l
TU16575 lncRNA upstream 18516 11304917 ~ 11321347 (+) True G11162
TU16539 lncRNA upstream 128288 11209001 ~ 11211575 (+) True G11137
TU16540 lncRNA upstream 133825 11205743 ~ 11206038 (+) True G11138
TU16535 lncRNA upstream 182522 11156538 ~ 11157341 (+) True G11133
TU16583 lncRNA downstream 2660 11343771 ~ 11392670 (+) True G11170
TU16559 lncRNA downstream 12755 11353866 ~ 11355216 (+) True G11152
TU16594 lncRNA downstream 67521 11408632 ~ 11409086 (+) True G11177
TU16595 lncRNA downstream 81048 11422159 ~ 11423589 (+) False rps28
TU16596 lncRNA downstream 81048 11422159 ~ 11444571 (+) True rps28
XM_043219425.1 mRNA upstream 3879 11331383 ~ 11335984 (+) True fitm1l
XM_043261468.1 mRNA upstream 39828 11265291 ~ 11300035 (+) False map4l
XM_043261476.1 mRNA upstream 39828 11265291 ~ 11300035 (+) False map4l
XM_043261450.1 mRNA upstream 39828 11265292 ~ 11300035 (+) True map4l
XM_043261459.1 mRNA upstream 39828 11265292 ~ 11300035 (+) False map4l
XM_043258084.1 mRNA downstream 19228 11360339 ~ 11367651 (+) True nr2f6a
XM_043258074.1 mRNA downstream 19238 11360349 ~ 11367651 (+) False nr2f6a
XM_043258093.1 mRNA downstream 19238 11360349 ~ 11367651 (+) False nr2f6a
XM_043256208.1 mRNA downstream 80979 11422090 ~ 11423303 (+) False rps28
XM_043256200.1 mRNA downstream 80979 11422090 ~ 11423303 (+) False rps28
TU16555 other upstream 83099 11240126 ~ 11256764 (+) False kcnh2a
TU16308 other upstream 621669 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 1423002 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 1424372 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 1588651 9746594 ~ 9751212 (+) True arpc5a
TU16613 other downstream 155249 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 155249 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 161291 11502402 ~ 11505730 (+) False mast3a
XR_006252734.1 other downstream 566962 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 938800 12279911 ~ 12280014 (+) True LOC122328992

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030883 False 937 mRNA 0.42 2 NC_007113.7 24317465 ~ 24320183 (+)
grasscarp (Ctenopharyngodon idella) TU32454 True 108 TUCP 0.37 1 CI01000004 7654772 ~ 7654879 (+)