G1705


Basic Information

Item Value
gene id G1705
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2522001 ~ 2549136 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU1924
CACAATTAATTGTTTTATTATAAAAGTATTACAATAAAACCAGTTACAAAGCACACACAATTTTCCCTCTGTACAACACTGATTCACAGGGTACAGACATAAATACCAATTTACAGCCAAAAATACATTACAGTGCCTGTCAAACCTTTAGTCTGGGGTTTTGGATGGTTTTGTTGCTCTTTTTAACATTATTCACTATAGTATGAAAAATATTACGGCAGCTAAAAGCATTTTGGTGACATGCGAGTCCCCAAGTCAGTTCAAAGGTCGGAGGCCATGTTTAGAACATTTCACAAAGCAAAAAGAAAGACAGCTGATTTGGATCAGCATATTATCTCAGTGATACTTTGTCTTATACAGCCTGAGTTCACACACAACAGAAGGGAATGAGATTTAACTTTTTTTAAAGCAAGATAAAAATGTAACCAAGTATTTCATAAAGGGCACTTGAGGCATCTGGTTGAAGCAATCCTCATACACACATTCCGTAAAGCTCCTTAAACTCATTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCTACCTGTGAGTTCTCTGGGAATGCGGACTTCTCCCTGTAGGACATCTATTTCAGGATGAATGGATATGCCATAGTTATATCCCATCCTGTAGGCCTCAATCATCCTCTCCTCCAAAACTTTACTTACGTTCTTCTTTGTCACGTGCAAAATGCCCAAGTTAGGAAAACTGTGAAACACGTGTAAGTGAATATTAAATATGACCATCGGTTTTATAATTGCATGTACCAAGAGTGTTACTGCTCAGAAAGAGGCATTCTGAATAACTGGATGCTGAGGGACAAATTCAGACCTGATAACTGGATCTTTGGGCTGCAAGTCAGCAATGCAGATTCCTTTATCACACTGTTTGCCCACCAGACTGTGAGCATGGAGATGGGGGTTCGGAGAGTTGGTCACCAGCTGAACAACCACTCGTGCTGCTCCCTGGTAGTTACAGATCTGTTGTCCAAAACAAACAGAATAAAAACATCACAATACAGTTACAGATCAAAATCTGCTAAAAAATTGCCACTTATTTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU1924 True 1113 lncRNA 0.54 2 2522001 2549136

Neighbor

gene id symbol gene type direction distance location
CI01000000_02461645_02466865 NA coding downstream 55136 2461645 ~ 2466865 (-)
CI01000000_02412118_02437900 NA coding downstream 83900 2412051 ~ 2438101 (-)
CI01000000_02356194_02395660 EBF3, EBF1 coding downstream 126341 2356140 ~ 2395660 (-)
CI01000000_02127038_02149249 NA coding downstream 369981 2126408 ~ 2152020 (-)
CI01000000_02119737_02125356 NA coding downstream 396645 2119513 ~ 2125356 (-)
CI01000000_02554934_02555230 NA coding upstream 5443 2554579 ~ 2555230 (-)
CI01000000_02595861_02603891 NA coding upstream 46725 2595861 ~ 2603891 (-)
CI01000000_02662396_02664142 NA coding upstream 113245 2662381 ~ 2665184 (-)
CI01000000_02738104_02750391 NA coding upstream 188522 2737658 ~ 2750553 (-)
CI01000000_02895656_02896151 NA coding upstream 345919 2895055 ~ 2896579 (-)
G1700 NA non-coding downstream 18587 2461305 ~ 2503414 (-)
G1699 NA non-coding downstream 23732 2490105 ~ 2498269 (-)
G1702 NA non-coding downstream 168529 2351676 ~ 2353472 (-)
G1713 NA non-coding downstream 170898 2350786 ~ 2351103 (-)
G1754 NA non-coding downstream 173699 2347938 ~ 2348302 (-)
G1825 NA non-coding upstream 41621 2590757 ~ 2590989 (-)
G1792 NA non-coding upstream 68405 2617541 ~ 2630860 (-)
G1859 NA non-coding upstream 157596 2706732 ~ 2707030 (-)
G1861 NA non-coding upstream 163390 2712526 ~ 2712755 (-)
G1862 NA non-coding upstream 176271 2725407 ~ 2725734 (-)
G1270 NA other downstream 543665 1924081 ~ 1978336 (-)
CI01000000_01357072_01359013 NA other downstream 1162063 1355476 ~ 1359013 (-)
G1077 NA other downstream 1170823 1332179 ~ 1351178 (-)
CI01000000_00683745_00689383 NA other downstream 1832548 682205 ~ 689610 (-)
G795 NA other downstream 2364011 157542 ~ 157990 (-)
CI01000000_03172562_03175863 HIGD2A other upstream 621255 3170391 ~ 3175863 (-)
CI01000000_03245643_03246684 NA other upstream 695998 3245134 ~ 3246721 (-)
CI01000000_03564077_03564373 NA other upstream 1017563 3562887 ~ 3567571 (-)
G2484 NA other upstream 1020930 3570066 ~ 3573554 (-)
CI01000000_04079738_04081018 MIF other upstream 1528985 4078121 ~ 4081117 (-)

Expression


Co-expression Network