srd5a2b (srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938)


Basic Information

Item Value
gene id srd5a2b
gene name srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13564422 ~ 13568025 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU138426
CTCTGCTTTCGGGGAGGAGCTGCTCTGAGGCGCTGTGTTTGCAGAACTCTGGTGAGGGGTTAAGAGGGGAGATACAGCATCAGAGTCACCCAAACCTGGTCTGGAACTAGACGGAACTTCGACCTCCATGCAGTGCCAGGAGCTTCTCGTGAGGGGCCTGAGCTTGGCCATGATCTTGGGTGgggtaatgcattttatatgtcTCATGAAATCTCACGCTGCCTATGGCCGCTACGTGGACACCTCGGGCAGCTCCATGATGGTGCCTGCAAGGCTCGCCTGGTTCCTTCAGGAGCTTCCCGCTCTGCTGGTGCCCCTTATTTTGATGCTGACCACCGATGGAAACAACGGCACTGGGAGACACCTGATGCTCGGGACCTTCTGCCTGCACTACTTCCAGAGGtctgattatattttttatgggAATGGGAATCAATATTCACAGCGACCACATTCTTCGCAGCCTGAGAAAACCTGGAGAAATTTCCTATAAAATCCCGAGAGGAGGTTTGTTTGAGTATGTGTCTGGAGCAAATTTCTTCGGGGAGATTGTGGAGTGGCTGGGCTACGCTGTTGCAACCTGGTCTTTACCCACATTTGCCTTTGCTTTTTTCACGATTTGCTTCATAGGCCCGAGAGCCTATCACCATCACAGGTTCTATAATGAAAAATTCAAAGATTTCCCCAGATCAAGAAGATCTCTCATACCCTTCATCTTCTAAGAGCCACGGCAGATTAATGGAGTTTTTGTTCTGACAGAAGGAAAGAATTCATCTTCTCAAATGCTATGATGCACACCTGTACTTTTGTACGTTTATTTTCATAATCTGATTTAGCATGTAGcaaaaaagtctaaaatgtaTGACTTGAACATGTTACTAGATTGTTTGTAATGGTTTTGACATCCTGTGAGATACTGGTTTAATCACAACACACTTTACTAGCCTACAGCTtagtctttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatttttacgtTGTTGCAGTTATTAGTGTATTTGCGTTGTGTGTAATTTTCGAAAATTCTTTCACGAAGCTTAATATGCAGATAAAACTAAGTAGGCTGATTTGTCAAAAGTGTAAACACTGCGTGGCTATGCG
>XM_043255089.1
tatctctatATGTAAAAAAGGGATctgaaatctttttaaaaaaggcattcTCACATTTCAGCAGGGTGCAAGCTGTAGCACGGTCAGGATTCGGCTCACCCTCTGCTTTCGGGGAGGAGCTGCTCTGAGGCGCTGTGTTTGCAGAACTCTGGTGAGGGGTTAAGAGGGGAGATACAGCATCAGAGTCACCCAAACCTGGTCTGGAACTAGACGGAACTTCGACCTCCATGCAGTGCCAGGAGCTTCTCGTGAGGGGCCTGAGCTTGGCCATGATCTTGGGTGgggtaatgcattttatatgtcTCATGAAATCTCACGCTGCCTATGGCCGCTACGTGGACACCTCGGGCAGCTCCATGATGGTGCCTGCAAGGCTCGCCTGGTTCCTTCAGGAGCTTCCCGCTCTGCTGGTGCCCCTTATTTTGATGCTGACCACCGATGGAAACAACGGCACTGGGAGACACCTGATGCTCGGGACCTTCTGCCTGCACTACTTCCAGAGGAGCTGCATCTACTCCCTGCTGACCAAAGGGCGGCCGTATCCGCTTAACATCATGCTGTTAGGGATGGTGTTTTGCTCTGTTAATGGCTTCCTGCAAGCACACTATCTGCTGCACTGTGCTACATATCACAATACATGGTTTTCTGAGGCCTGTTTACTAACCGGtctgattatattttttatgggAATGGGAATCAATATTCACAGCGACCACATTCTTCGCAGCCTGAGAAAACCTGGAGAAATTTCCTATAAAATCCCGAGAGGAGGTTTGTTTGAGTATGTGTCTGGAGCAAATTTCTTCGGGGAGATTGTGGAGTGGCTGGGCTACGCTGTTGCAACCTGGTCTTTACCCACATTTGCCTTTGCTTTTTTCACGATTTGCTTCATAGGCCCGAGAGCCTATCACCATCACAGGTTCTATAATGAAAAATTCAAAGATTTCCCCAGATCAAGAAGATCTCTCATACCCTTCATCTTCTAAGAGCCACGGCAGATTAATGGAGTTTTTGTTCTGACAGAAGGAAAGAATTCATCTTCTCAAATGCTATGATGCACACCTGTACTTTTGTACGTTTATTTTCATAATCTGATTTAGCATGTAGcaaaaaagtctaaaatgtaTGACTTGAACATGTTACTAGATTGTTTGTAATGGTTTTGACATCCTGTGAGATACTGGTTTAATCACAACA

Function

symbol description
srd5a2b Predicted to enable 3-oxo-5-alpha-steroid 4-dehydrogenase activity. Predicted to be involved in steroid biosynthetic process. Predicted to act upstream of or within cell differentiation; sex differentiation; and steroid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in hindbrain; pectoral fin; and testis. Human ortholog(s) of this gene implicated in hypospadias and prostate cancer. Orthologous to human SRD5A2 (steroid 5 alpha-reductase 2).

NR:

description
PREDICTED: 3-oxo-5-alpha-steroid 4-dehydrogenase 2

GO:

id name namespace
GO:0008202 steroid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function

KEGG:

id description
K12344 SRD5A2; 3-oxo-5-alpha-steroid 4-dehydrogenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU138426 False 1175 TUCP 0.42 4 13564422 13567925
XM_043255089.1 True 1197 mRNA 0.46 5 13564664 13568025

Neighbor

gene id symbol gene type direction distance location
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding downstream 158879 13390572 ~ 13405543 (-)
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding downstream 279800 13275699 ~ 13284622 (-)
sptlc3 sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357 coding downstream 360190 13181337 ~ 13204232 (-)
ism1 ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810 coding downstream 384969 13166439 ~ 13179453 (-)
kif16bb kif16bb,LOC107654912,LOC107600573 coding downstream 434710 13097691 ~ 13129712 (-)
memo1 memo1,LOC107654980,LOC107705412 coding upstream 2765 13570790 ~ 13580096 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding upstream 111262 13679287 ~ 13684104 (-)
LOC122356826 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 coding upstream 159717 13727742 ~ 13735822 (-)
LOC122356402 mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967 coding upstream 171624 13739649 ~ 13743024 (-)
LOC122356831 erlec1,LOC107654972,LOC107679899 coding upstream 278816 13846841 ~ 13852454 (-)
G93513 NA non-coding downstream 216537 13347401 ~ 13347885 (-)
LOC122356420 NA non-coding downstream 291281 13271278 ~ 13273141 (-)
LOC122356418 NA non-coding downstream 339886 13208410 ~ 13224536 (-)
G93472 NA non-coding downstream 401695 13162489 ~ 13162727 (-)
G93471 NA non-coding downstream 402052 13162145 ~ 13162370 (-)
G93562 NA non-coding upstream 11502 13579527 ~ 13675111 (-)
LOC122356419 NA non-coding upstream 54741 13622766 ~ 13650733 (-)
G93583 NA non-coding upstream 86354 13654379 ~ 13655349 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding upstream 93725 13661750 ~ 13663911 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding upstream 97784 13665809 ~ 13666260 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other downstream 5588 13520413 ~ 13558834 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other downstream 239371 13309952 ~ 13325051 (-)
LOC122356414 NA other downstream 967120 12557077 ~ 12597302 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 1133644 12429197 ~ 12430778 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 1270828 12278454 ~ 12293594 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 125001 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 330233 13898258 ~ 13904702 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other upstream 342314 13910339 ~ 13911837 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other upstream 511507 14079532 ~ 14082790 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other upstream 592298 14160323 ~ 14164414 (-)

Expression


Co-expression Network