LOC122356402 (mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967)


Basic Information

Item Value
gene id LOC122356402
gene name mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13739649 ~ 13743024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255077.1
CCCAGCGCCTCCGGTGGGTGGGTCCACGCTGAGCTCCCTCACACAAAGACGCAGATCTGGCGCGAAAGCACTTTTACCGGCAGCGGGCTGGGGGAAGGTGCGGCTGCACTGCACCACGCGGATCGATCGTTGCTGCCGTTGTAACAGAACACCCGCTTTATTTCcgcaagggggaaaaaaacttttctcGTTGTTCAGGTTAAACGGCCGTAAAACAAAGGCAGCTGGCGAAGCGCGCTATTGTTTAGCGAGCGCGTGTGTACCGGAGTTCTACCGGACGCTGCGCCTCTTTGTTCTGTTCTGCGCGTCCCGTAGACTCTGCCTGGACTTTGCAGGTCTGCGACCTCATGATAATCTTGTAGAAGTTCTGCAGCAATGCCTGGAGTCAACACTCACCCACTGTACGGCTGGGACATGGAGCACTACTTTTACGACCAGATGGACATCGAGGAGGATTTCTTTAAGTCTACAGCTCCGAGCGAGGACATATGGAAGAAATTCGAGCTGCTTCCCACCCCACCCATGTCGCCCTCAAGGACGCTAGATGGAGACTGGTTACTGCCGTTACCGGGGGACCGGCTCGGGTGGGCGCCGCCGAAGGTATTAACGTGTGACGAGGAATACGAGGGGCTGCACAAGTTCGATCCACTGGACATTTTTGGGAATCTGGGATCGATCGTTATCAAAGACTGCATGTGGAGCGGTTTTTCCACGAGTCACCGGCTGGAGAAAGTGGCTCACGGCGAGCGAGCTCCGGTGACCGCTCAGATTCAGAGCTCGAGCGCACAGAAAGCTGCTCGTGCCGCATCGGGCACGCCCGTGACCGGGACCCAGGCGGCACAGTGCGTGAACCCCGCCGCAGTCCTGGAGCTTCCTGTCCCGCATAACAAGAAAGTGGCTGCGGGCTCCTCCGGTTCTGAGTGTCGCTCGGATTCATCCGATGACGATGAGGATGATGACGAGATTGACGTTGTGACAGTAGACAACCGGCCAAAGCGGGGCCGCCCTCCAAGTCGCCGTACGCCAGTAACCATTACAGTGAGTGCTGATCCGTTTGGACCATGTCCCAAGCGCTTCCATGTGTCTCTGCATCGGCAGCAGCACAATTACGCTGCCCCTTCCCCTGACACGGATCCCGAGGACGACTTTGAGATGGAGTCCCTAAGCAAACGGCCACGCCTGGAGCCTTCATCCTCTCCCTCATCTCCGCTTTCTTCACCTGCCACGTCGGACTCTGAGGACTCCAGCGAACAGCGTCGGAACTTTttggagagaaagaggagagacGACCTTCGCTCGAGGTTCCAGGCGCTCCGGGAGGAGATTCCGGGTTTGTCTGCTTCCTCGAAGACCTCGAAGGTGGCCATTCTGACACAGGCGACGGAATACCTGCTGCAGCTGCATGCTTGCCAACGCCGTCAAGCTCAGGAGAAGAGAAAACTCAAAGCCAAACAACAACAGCTTCTCCGCAGGATTAGTGTATTACAGAACTCCTAATtaggaaaagaaaaagtctaCTTCAACTCAGCACAATATTTCCAAAGCTCATTATGGACGAGAACTCATTGTCATTGACTGAAATGACACTTAAAACACTGCAGGGAGGTCTTTAAAACCACATTTGAATTATGCCCTTCTTGAATGAATCTgcacatgcgtgtgtgtgtgtgtgtgctgggcTTTCAACCTTAGTTGAGATGTGAAGAACTTTGTGTGAGGAGAGACGATGACAAATGTGCACATGCAATGCCTTTATAAACCTCAGTGGATGTCGATGCAGAGGATTTTACCTCCGTAGCGAGAAGGGTGGGTGGTGTTTGTATGCATGTGGGTGGTGTGTAGGGTGTATAATGTTAGGGGAGCATGGTGTTTGAACACGTTGTGTAGAAAATTTGAAGTGTCCATAACTTGATCTGTACAAAATCTGCTGTAAATACTGTATTGAGAGGATGTTCTCCTCCTGTATCTACTCACAAACTGCACAGAGATTCTATTTTGTTAAAGAATAAAGCATCTAAAATGA

Function

symbol description
mycla Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including axial mesoderm; nervous system; pectoral fin bud; presumptive neural retina; and shield. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

NR:

description
PREDICTED: protein L-Myc-1a isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255077.1 True 2023 mRNA 0.53 3 13739649 13743024

Neighbor

gene id symbol gene type direction distance location
LOC122356826 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 coding downstream 3827 13727742 ~ 13735822 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding downstream 55545 13679287 ~ 13684104 (-)
memo1 memo1,LOC107654980,LOC107705412 coding downstream 159553 13570790 ~ 13580096 (-)
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding downstream 334106 13390572 ~ 13405543 (-)
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding downstream 455027 13275699 ~ 13284622 (-)
LOC122356831 erlec1,LOC107654972,LOC107679899 coding upstream 103817 13846841 ~ 13852454 (-)
LOC122356415 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 coding upstream 115806 13858830 ~ 13884172 (-)
zgc:153911 LOC107739899,LOC107683281,LOC107553199,LOC107705423 coding upstream 193744 13936768 ~ 13938825 (-)
si:dkey-157l19.2 LOC107705424,LOC107654964,LOC107602919,LOC107680818,LOC107739876,LOC107553200 coding upstream 203066 13946090 ~ 13968629 (-)
lgmn lgmn,LOC107705425,LOC107602950,LOC107654963,LOC107682791,LOC107739877,LOC107553201 coding upstream 227398 13970422 ~ 13977113 (-)
G93855 NA non-coding downstream 51023 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 73389 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 75738 13661750 ~ 13663911 (-)
G93583 NA non-coding downstream 84300 13654379 ~ 13655349 (-)
LOC122356419 NA non-coding downstream 88916 13622766 ~ 13650733 (-)
G93879 NA non-coding upstream 18022 13761046 ~ 13930294 (-)
G93905 NA non-coding upstream 444515 14187539 ~ 14189904 (-)
G94003 NA non-coding upstream 1129408 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 1237972 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1536383 15279407 ~ 15284055 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 21335 13693026 ~ 13718314 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other downstream 171624 13564422 ~ 13568025 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other downstream 180815 13520413 ~ 13558834 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other downstream 414598 13309952 ~ 13325051 (-)
LOC122356414 NA other downstream 1142347 12557077 ~ 12597302 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 155234 13898258 ~ 13904702 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other upstream 167315 13910339 ~ 13911837 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other upstream 336508 14079532 ~ 14082790 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other upstream 417299 14160323 ~ 14164414 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 1281808 15024832 ~ 15099233 (-)

Expression


Co-expression Network