RNA id: XM_043255077.1


Basic Information

Item Value
RNA id XM_043255077.1
length 2023
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC122356402
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13739649 ~ 13743024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGCGCCTCCGGTGGGTGGGTCCACGCTGAGCTCCCTCACACAAAGACGCAGATCTGGCGCGAAAGCACTTTTACCGGCAGCGGGCTGGGGGAAGGTGCGGCTGCACTGCACCACGCGGATCGATCGTTGCTGCCGTTGTAACAGAACACCCGCTTTATTTCcgcaagggggaaaaaaacttttctcGTTGTTCAGGTTAAACGGCCGTAAAACAAAGGCAGCTGGCGAAGCGCGCTATTGTTTAGCGAGCGCGTGTGTACCGGAGTTCTACCGGACGCTGCGCCTCTTTGTTCTGTTCTGCGCGTCCCGTAGACTCTGCCTGGACTTTGCAGGTCTGCGACCTCATGATAATCTTGTAGAAGTTCTGCAGCAATGCCTGGAGTCAACACTCACCCACTGTACGGCTGGGACATGGAGCACTACTTTTACGACCAGATGGACATCGAGGAGGATTTCTTTAAGTCTACAGCTCCGAGCGAGGACATATGGAAGAAATTCGAGCTGCTTCCCACCCCACCCATGTCGCCCTCAAGGACGCTAGATGGAGACTGGTTACTGCCGTTACCGGGGGACCGGCTCGGGTGGGCGCCGCCGAAGGTATTAACGTGTGACGAGGAATACGAGGGGCTGCACAAGTTCGATCCACTGGACATTTTTGGGAATCTGGGATCGATCGTTATCAAAGACTGCATGTGGAGCGGTTTTTCCACGAGTCACCGGCTGGAGAAAGTGGCTCACGGCGAGCGAGCTCCGGTGACCGCTCAGATTCAGAGCTCGAGCGCACAGAAAGCTGCTCGTGCCGCATCGGGCACGCCCGTGACCGGGACCCAGGCGGCACAGTGCGTGAACCCCGCCGCAGTCCTGGAGCTTCCTGTCCCGCATAACAAGAAAGTGGCTGCGGGCTCCTCCGGTTCTGAGTGTCGCTCGGATTCATCCGATGACGATGAGGATGATGACGAGATTGACGTTGTGACAGTAGACAACCGGCCAAAGCGGGGCCGCCCTCCAAGTCGCCGTACGCCAGTAACCATTACAGTGAGTGCTGATCCGTTTGGACCATGTCCCAAGCGCTTCCATGTGTCTCTGCATCGGCAGCAGCACAATTACGCTGCCCCTTCCCCTGACACGGATCCCGAGGACGACTTTGAGATGGAGTCCCTAAGCAAACGGCCACGCCTGGAGCCTTCATCCTCTCCCTCATCTCCGCTTTCTTCACCTGCCACGTCGGACTCTGAGGACTCCAGCGAACAGCGTCGGAACTTTttggagagaaagaggagagacGACCTTCGCTCGAGGTTCCAGGCGCTCCGGGAGGAGATTCCGGGTTTGTCTGCTTCCTCGAAGACCTCGAAGGTGGCCATTCTGACACAGGCGACGGAATACCTGCTGCAGCTGCATGCTTGCCAACGCCGTCAAGCTCAGGAGAAGAGAAAACTCAAAGCCAAACAACAACAGCTTCTCCGCAGGATTAGTGTATTACAGAACTCCTAATtaggaaaagaaaaagtctaCTTCAACTCAGCACAATATTTCCAAAGCTCATTATGGACGAGAACTCATTGTCATTGACTGAAATGACACTTAAAACACTGCAGGGAGGTCTTTAAAACCACATTTGAATTATGCCCTTCTTGAATGAATCTgcacatgcgtgtgtgtgtgtgtgtgctgggcTTTCAACCTTAGTTGAGATGTGAAGAACTTTGTGTGAGGAGAGACGATGACAAATGTGCACATGCAATGCCTTTATAAACCTCAGTGGATGTCGATGCAGAGGATTTTACCTCCGTAGCGAGAAGGGTGGGTGGTGTTTGTATGCATGTGGGTGGTGTGTAGGGTGTATAATGTTAGGGGAGCATGGTGTTTGAACACGTTGTGTAGAAAATTTGAAGTGTCCATAACTTGATCTGTACAAAATCTGCTGTAAATACTGTATTGAGAGGATGTTCTCCTCCTGTATCTACTCACAAACTGCACAGAGATTCTATTTTGTTAAAGAATAAAGCATCTAAAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138877 lncRNA downstream 51023 13685947 ~ 13688626 (-) True G93855
TU138489 lncRNA downstream 73389 13665809 ~ 13666260 (-) True G93591
TU138485 lncRNA downstream 75738 13661750 ~ 13663911 (-) True G93588
TU138478 lncRNA downstream 84300 13654379 ~ 13655349 (-) True G93583
XR_006252321.1 lncRNA downstream 88916 13622766 ~ 13650733 (-) True LOC122356419
TU138919 lncRNA upstream 18022 13761046 ~ 13930294 (-) True G93879
TU138913 lncRNA upstream 160730 13903754 ~ 13904702 (-) False LOC122356386
TU138967 lncRNA upstream 444515 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA upstream 444515 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA upstream 444515 14187539 ~ 14189904 (-) False G93905
XM_043255898.1 mRNA downstream 3827 13727742 ~ 13735822 (-) True LOC122356826
XM_043255095.1 mRNA downstream 21335 13693026 ~ 13718314 (-) True map3k4
XM_043255064.1 mRNA downstream 55545 13679287 ~ 13684104 (-) True erlec1
XM_043255065.1 mRNA downstream 55659 13679287 ~ 13683990 (-) False erlec1
XM_043255063.1 mRNA downstream 55659 13679287 ~ 13683990 (-) False erlec1
XM_043255902.1 mRNA upstream 103817 13846841 ~ 13852454 (-) True LOC122356831
XM_043255094.1 mRNA upstream 115806 13858830 ~ 13884172 (-) True LOC122356415
XM_043255049.1 mRNA upstream 155234 13898258 ~ 13904687 (-) True LOC122356386
XM_043255522.1 mRNA upstream 193744 13936768 ~ 13938825 (-) True zgc:153911
XM_043255623.1 mRNA upstream 203066 13946090 ~ 13968629 (-) True si:dkey-157l19.2
TU138887 other downstream 42857 13696072 ~ 13696792 (-) False map3k4
TU138426 other downstream 171724 13564422 ~ 13567925 (-) False srd5a2b
TU138208 other downstream 1142347 12557077 ~ 12597302 (-) True LOC122356414
XR_006252291.1 other downstream 1308871 12429197 ~ 12430778 (-) False tmem234
XR_006252352.1 other downstream 1940617 11771428 ~ 11799032 (-) False utp25
TU138915 other upstream 167315 13910339 ~ 13911837 (-) True G93875
TU138946 other upstream 336508 14079532 ~ 14082758 (-) True LOC122356235
TU138948 other upstream 417299 14160323 ~ 14164348 (-) True srsf5a
TU138949 other upstream 417299 14160323 ~ 14164348 (-) False srsf5a
TU138950 other upstream 417299 14160323 ~ 14164348 (-) False srsf5a

Expression Profile