RNA id: XM_043255623.1


Basic Information

Item Value
RNA id XM_043255623.1
length 5452
RNA type mRNA
GC content 0.45
exon number 7
gene id si:dkey-157l19.2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13946090 ~ 13968629 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAATTCTCACCTGGAGCCTCTTGGGGTTTGAGCAGAGAGGAGTTTCTCAAGCCAGATGAGAGCACAGTCTGCAAGGACTGCTCAAGACTGGTAGCTCTCTAAGGAACAAGAGTTTCCTAAGAAAACGGGAATACTGTGGAAATGCCTCACCTGAACtttccagaccacattcacatGGACCGTCCGATataaaaggatttaaaaatacagcgcCAACAAGGAAACCGAGGGATCCAGAAGTTACAGgCTGCGCAATGTCATCTGGCCGTGAGTCTATAGGGGATCTGATTCCCCCAGATATGCTGCAGGTGTTCAGTGAGGACCGGCAGGGCGGCAGGAGCAAAAGGGGCAGGAGAAGGCCAGGATCCTTCAGCCGTGCTTTCAGATGGTTTAAGGGCCAGAGGAGGAAAACCCGTAGACGAGCTACAGAGATACATGGTGACCTGCTGGCCACTGGTTCACCTGTAGAACTACCAAAATCAACACTTATCACAGGCTCTAAAGAGGAAGCTGTGGGAGCTATTGCTCTTCAGGAGTTccaagaaaatgtgtttgtggaGGGTAATCGGCCTAAACATGTGTTGGACCTGCACACAGAGGCTCAGCAGGGCCTGAAAATGCAGCAGCAAGAGGATGATAGGAATGGGATAGACTACCCTGATGACCAAAGTATGATTTCAACAGTAACCGCTCAGACTGAAGACAGCATGGCCTTCAGTGAGCTGAGAGGCTTTGAGTCTGAGAGCACAGTTGCTGATTCTGTTTCGATGCGCTCCTCCATCTCCTCACGATCAACACGTTCAGGACTCAAACGCCAAGCTTCGACATTCAGGCCTCTGAAGCCGGATAAGACAGCTGAGAAGACAAAGTCTCACAGGAAACATGTGAGAACTGTTGTAGGAATTCCTCGACATGTTCAGAAAGAACTGGGATTGGACAGAGCAGCATGGATCACCACAAAACCTCTTGATGGTCAGCTGTTTAATGGAGATATGATCATACCTGCCATAATTTCCACTGTGGATGACACATCTTCCAGTTCTGAACAAGAAAGTGTACAAGACCATCTACAGGGAATACAGAACCTGTACACAGTTAAGAAAGACAACAAGGAGCTCCCCACACTGACAAAACCTAAAGATGATATTCTCCAAGGGCTCATGAGTTATTCTTTAAATCCAGAAAAGTCAGGTGTTCTAGGTGTTCCTTTGTCAGAGAACCCAACTGGTACAGTGATGTCCATCTCACCTCAGGCCACATACATGTCTAAAATCATTCCAAATGCTGTACTTCCACCGTCTGTGGATGTCGTAGAGCTCAGTCGCAACAGAAGTCGCAGCAGTGTACGAACCGTCAGCAAGAGCAGCCTTGTATCAGCCAGTCCAGCATCCACACGTGCTTCTTCCAGAGTCTCTTCACGTTGTTCCACAACTCGCTCAAACTACTCTGGATGGACCCACTCGGGATCATCAGAAACACTTGTATCTGATTCTTCTACCATCTCCAGCAGTAGCACTCCCCGTGTGGCCAGCAGAGGGAGTCAGGTTGAGAACAGGAGTAAACCAGCCAATCTGAACAACCACGGTTCCCATGTTAAAACTGCTCGTGTGAATGGTGGCTCTACCGAGGAGGAAGACAGTGGAAAAATGAAATCTGCTGATGCTTTCACACGTAACCTATCAGTGATTAAACGGGGCAAGAAACCTCCAGCTCCTCCCAGCAGGTCATACTCTTTACACAATGGGAAACAGACTTGGAAGAAATCTGAGAGTCCTACCTACATGGATGATGTCAACATTCCAGATGGATCACCATACCCTCTTGTCATGAAGGCCACCACTCACAAGTTGAGCCCTAAGATACCTGCCTCGAATGGACCCACATCTTTCCCATTAAAGGAGAACCAAACAGTCAGCACAGATAAGAAATCAATGTTAGCTGagcaaaatatacacaaaaaaaaccttcaagTGTCTTCCACTGGCGCTCCCCAATCATACATAAATGGCACCAGTAAGCTTGCTGAACTTAAGAACACCCTTCTGTCTGCAAAAAATCGAATCAATGGTAACAATTCATCACCAGCTGTAATGGCCCTTTTGTCTCTGCTTGAGATTCCCAACCATCCTAAAGTCCTGGCTCCACCAGCTCCTCCTCCTGAGACCTGGGCTCACAACCAGCGGACTTTTGAACTGCTGTGTGGCCCTGGACCTGTTAACTATGCACGTTGGGCCAAAAAGAGAGGACTTAAAATTGCAGATGAACCAGATGTGGCGTTGATACCTCTATCGCAGCCAGTAGAGATAAAAGGCAAAGTTGAATCTAAAGCACCACTTGTCTATGTTGCCCCATCTCCATCGCCTCCCCCAGAGCATTGCCCACCAATACCAAACAACAGCCAAGCCAAACCTCCTCCGCCCCCTCCGGACTTTGTTCCCTCAACTCCTACACTAGCTGCCAAAGCAATAAAGGATTTGACTTCTTGGATCCCTCCACCTCCTTTGTTTCCTCCTCCAGCACCTCCAGCAGGTACGACTACAGCAACTCCTGTCATTGTGCAAAATGATACTGATCTCCCTTCACCGCCCCCACCGTTTTCACCACAGTCTTTACTGACAATGCCTCAACTACCACCAGATATTCCACCACCACCACTGCAAGAAGTTCCATCTCCACCAAGACCACCTTCTGAACCACAGAATACCTCATCCCTTCCACAAGAATCCAAACCTTCAACACAAAATGTGTTAGTAACATCCTCTAAAACTTATCAACAAATTAACattcctccacctcctccagtGCCCACTGATGTAAGATCTCAAGTCAGTgttcctccacctcctccagtGCCCACTGATGTAAGATCTCAAGTCAGTGTACCTCCACCTCCTGCAGTGCTCTCTGATGTAAGATCTCAAGTCAGTgttcctccacctcctccagtGCCCACTGATGTAAGATCTCAAGTCAGTGTACCTCCACCTCCTCCATTACCCACTGATGTAAGATCTCAAGTCAGTgttcctccacctcctccagtGCCCACTGATGTAAGATCTCAAGTCACTgttcctccacctcctccattACCCACTGATGTAAGACCTCAAGTCACTgttcctccacctcctccattACCCACTGATGTAAGATCTCAAGTCACTGTTTCTACTCCTCCACTACCTAGTAATGTAAAAATGGAGGACAGACTAGagaagacagaaacagagaaacGAACAAGCAGTCCCTCTCTAGCCAAAGAGGACGCATCCGGTCCTGTGGTCACTCAGTCTCTCCTACAGATGGTTCGTCTTAGGTCGGTTAAGACCAGTCCGAGCACTACTGTAGATCCTGATAAACCATCACAACCCAAACCAAAATCAGGTGTCAATCAAGAGGCACCTCCAAAGCCAATCAGACAATCTTTAATTTTGACATCACTTCCCCCTGATGTGGAAGCTCTTGCCAACACAAACACTGAAGCTCCGTCCATCAACACAAATGCAGTCACTGTATCAAATACTCAGCAAGGATCATCTAAGCCAGAAACTCAATCAAATAACATTGCTCAACTTGAGCCAAAATGCTCATCAGCTACATGTCCAGCTACGGAACCAAGTAAGAATCCAGTTACTCCTGAACCAGCAACTAAAACAGCCAGTCCAGAAACAGAACCCACACCTCAAACCCtaaaagaacaaattaaatCTACAATGCATGACCCAGAAACTCTGCCAAGTACAACAGGACCAAAGGACCAATCAATCAATGCGCCAAAGCCTCAACATCAAGCACAAGAACCCAACAAGACCATGCTTAATTCAGAGAAGCAATTAAGTACTGTTGAAAATTACTCAAAGCCAGAGGGTGAGCAGCCAAAAACCCAAACACTGACACCCGTTGTCTCATCCACACCTCCCATAGTCTCTTCACCAGCGAACCCCTCCATGCGTCTTCAGGAAGCCATTCGTCTAAAGGCGGCTGCTATGTCTTCAAAAGACAACCAAGCCAAACGTTTTGGTCTTCGCTCACCTCCCCCAGCCACAGCTAATGGCACCACTGTACCAAACTCCCCGGCATCTATGGCCAGCTTTATCTTCTCCAAAAGCCCAAAGAAAGTAATAATACAGACACCGTCATCCTTAGAGGTTCAGGCTGACCTGAGGAAAACTCTGGTGGCAGAGTTAGCATGTGTCTCTGATTCAGCAAAGTCTAATGACTTGCACAAGACAGCAAACAAAGTTCCTCCACCAATTGCTAAGAAACCCAATGCTAAGGTTGAGAGCGTTGCTCAGAACTCTGCAGAGGACCAGTCTGTAGCCAAGACTGAGCATGTGCAAACAGAGACTGTACTAACTGCCGGACAGGACGTACAGACCGAGAACTCtgagaaaacaaatgaatgaatatgtgcACAAATGATTTAATAACCGTTgagtttttgctttaatttgcaGATAACCTAGGGTTTAAATCTTAGGCCCAAACTGcttaattttgaaatataaaataaccaaaaaaagtaCAGATAGGCATATTGCACTTTTTGTACACTGGTTTAGTGTAAGTGATTCTCATTCATCATGGCAATGCAAGTCACTGGTATTTggaaattataaatattcttattttatttatgtgtccTCTGTCTTAGACAGAAGCCATGACACTTTCCAGTTTGTAGAACTCCTCCCTGCTGGTAGCACTGTAAAAACTATGGTAAACATGGCAGGACCAATTAATCTCTGGTGGATTTTTACAGGCTTTAATGTATACCTGAATATGAGAGCAGTGTGAAAGGAAACGAAGGTAAAGAATGTAAGGTTGAACAGTTAGGAGAATGGACCACTGATTTTGGGGTGGGGTTTGtgactttttctgttttccatttGCAAGGTTTAACcaagatttgtttaaaattttaaaacaacaattcagTAAAGGTGATTGTACACATTCCCCACCCCAAGTTACACTTATATAAGAATGTGGAGAAGGAATCTAAGCAAGTATAAATGAAATGGAAGGATGGAGCCGATGATTGAAACAAAAGCCGTTTCTCACGATTTTGTGCAAGTAGGGCCAAGAAGGTGGTCGGAAGTTATGAAACCATAAACAAGAGGTCTAAGGTGTTAATCTCTGTGTTATCATTacttttggtttatttttttgtattttcacagAGAAGTTCATTAGTTTACATAGCTGATGTACATTACAGTCTGCTACAACctacaaataaaagaaaaagaatgtttttaatatatgaaaatttTCTTATGCACTatactgacatttttattatcgtTCCTTTGATTTCAGAAATCTACGTCTCTGATTATAAtctctttttaagaagaaatgctttatttacatataataattgttaaaaaaaatattgtttcatcATGTGATGAAAGTAAAAGTGTACAACAGTTACTAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138919 lncRNA downstream 15796 13761046 ~ 13930294 (-) True G93879
TU138913 lncRNA downstream 41388 13903754 ~ 13904702 (-) False LOC122356386
TU138877 lncRNA downstream 257464 13685947 ~ 13688626 (-) True G93855
TU138489 lncRNA downstream 279830 13665809 ~ 13666260 (-) True G93591
TU138485 lncRNA downstream 282179 13661750 ~ 13663911 (-) True G93588
TU138967 lncRNA upstream 218910 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA upstream 218910 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA upstream 218910 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA upstream 218910 14187539 ~ 14189904 (-) False G93905
TU139118 lncRNA upstream 903803 14872432 ~ 14873014 (-) True G94003
XM_043255522.1 mRNA downstream 7265 13936768 ~ 13938825 (-) True zgc:153911
XM_043255049.1 mRNA downstream 41403 13898258 ~ 13904687 (-) True LOC122356386
XM_043255094.1 mRNA downstream 61918 13858830 ~ 13884172 (-) True LOC122356415
XM_043255902.1 mRNA downstream 93636 13846841 ~ 13852454 (-) True LOC122356831
XM_043255077.1 mRNA downstream 203066 13739649 ~ 13743024 (-) True LOC122356402
XM_043255799.1 mRNA upstream 1793 13970422 ~ 13977113 (-) True lgmn
XM_043255798.1 mRNA upstream 1793 13970422 ~ 13977092 (-) False lgmn
XM_043255454.1 mRNA upstream 9463 13978092 ~ 14005778 (-) False pcnx1
XM_043255452.1 mRNA upstream 9463 13978092 ~ 14005778 (-) False pcnx1
XM_043255453.1 mRNA upstream 9463 13978092 ~ 14005778 (-) False pcnx1
TU138915 other downstream 34253 13910339 ~ 13911837 (-) True G93875
TU138887 other downstream 249298 13696072 ~ 13696792 (-) False map3k4
TU138426 other downstream 378165 13564422 ~ 13567925 (-) False srd5a2b
TU138208 other downstream 1348788 12557077 ~ 12597302 (-) True LOC122356414
XR_006252291.1 other downstream 1515312 12429197 ~ 12430778 (-) False tmem234
TU138946 other upstream 110903 14079532 ~ 14082758 (-) True LOC122356235
TU138948 other upstream 191694 14160323 ~ 14164348 (-) True srsf5a
TU138949 other upstream 191694 14160323 ~ 14164348 (-) False srsf5a
TU138950 other upstream 191694 14160323 ~ 14164348 (-) False srsf5a
TU139176 other upstream 1272121 15240750 ~ 15242797 (-) False col9a1b

Expression Profile