RNA id: TU138949


Basic Information

Item Value
RNA id TU138949
length 2527
RNA type TUCP
GC content 0.46
exon number 8
gene id srsf5a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14160323 ~ 14164414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGAGTTCCCCAGTCTCGAGGCGAACGCCATTTTGTCCTGTAAGCTGAGATTTCCCTGAGTCTTATATCACCATGAGTGGATGTCGTGTATTCATCGGCCGTCTGAGCCCTCATGCTCGTGAAAGAGACGTGGAGAAGTTCTTTAAAGGCTACGGACGCATTCGGGAGATTAACCTGAAAAACGGGTTTGGCTTCGTGGAGTTTGATGACCACAGGGACGCTGATGATGCAGTGTATGAGCTGAATGGAAAAGAGCTGTGCAGTGAGAGGGTGACCATTGAACATGCTCGCTCTCGCCGTGGAAGAGGCGGTGGCCCAGGAATGGGAGGACGTTTCTCTCCACGATTTGGAGGATATCGTAAATCCCGCAGTGGGGGTTCCAGGTATGGACCACCCGTGCGAACGGAGCACAGAATCATTGTAGAGAATCTCTCCTCTCGCATCAGCTGGCAGCTGTGCTCTGGTATTCTTTAATTGGAGTTGCATGCACAGCCTCCGAGGTGCATAGCGCCCTCCCCTGGTTGTGTTCTGAATAGTGTCCCTCTGGTGCCTCACCCGACACGCAGTGTCTGCCGGTCTAAGTCTTGGCTGGGTCCGTAGCGCCAGACAGAGCCGTAGCACAGGATAGCCTTAGAGGAGCTGGGTAGCCGCTCTCTGGAGGGTCTGTGATGTCAGATCTGCTCCACCCCCCCCGATCTGCTGTTTGGGTCTTATTCTGTTGGTGCTGAAGCGGGGAGGGGTGCAGGGTTTTGGCCCCTCCCCCATCCTCTCTCTCTGGTGGGGTCCGTTCTTACGGAGGCCGGATGGGTCGAGTCCGAGGTCGTTTTAACGCTTCATTGCTTCCGTTTGCTATTTGGACAAGTGGCTCTTTGCTAATGCCTTCTGTGGTTTGGAACGGTAAGTAGCTCATCACACTGGATAGTCACACGGTAAAGAGggttctgtcattttaaatctggAGTTAGTTGTAAAAGGAGAAAGACTGCCGGTAGGAAGTTTTGAGACTTGCACAAAAtctaattaacaaaaatgagaACCTGTTCTCAGGAGCTAGCTGTAGTCAGGCGTGTCTCCATCTGAGGGCTTTGCTACCTGCTGTTTTACACAATCTAAATGAGATTTGTGTTGCCGAAAACGCTTCGGTAGTTTTATAACTGGGACAAACATCCGGTAAGATGACATCTGTTGAGGGAGCTTTCTACAGGTGCGTCAGTGCACACTTTAGAGCAGATGCCGCAGAATGCAGTGTGTACTTAATGTGTGGGTGCCAAAGTGCAGTGTGTGACTCTTGGGTTTTGGGTTCTCTGAAAACATGTCATTAAGTGCTTTCTATGCTTTCTGCAGGATCTGAAGGACTTGATGAGGAAGGTGGGAGAAGTGACCTTTGTGGATGCACACAGGACCAAGAAGAATGAGGGAGTTGTGGAGTTTGCTTCACACAGTGATATGAAGAATGCCATTGAGAAGCTGGATGGAACAGATCTGAATGGACGGAAACTCAAGTTGTACGAGGATCGCAAGAGGGATCGTAGTAGAAGCCGTTCCCGCAGCAGGAGCAGCTCCCGCTCCCGATCGCCTAGTCGGAGTCGCACCCCTGAGCGTGGAAGCAAGCGCTCTCGCAGTCGGTCAATCAGTCGCACCCCAGAGAAGAAGAGTACCAGCAACCGGTCTCCTTCCCGATCTCCATCTCCCCCGAGGAAACAGAGCCGCTCTCGATCTCCTTCTGCAGAGAGTCAGCACtgaaactgtgtgtttgtgtgcgcgtgtgtggatagttgacttttttttttgtttttttatatataaatcctTCACTTATTAATGTGGCATGTCATTGTGCTACTTTAGTGTAAATTACTTACTGTGAgttgaatgtatgtgtgtgtgtatgaagctGTTTTGATTTCTTATGCCGAGGAACTGGGTGGGTTTAAATGATATCGAAATGGGTTAAGactagaggttttttttttttttttttttttttttttttttttcccaccacacaatgtcttgtttttgtatttttatttgatcaatatcAATCCTGGAGTACTTCTGTAGAGAAATGTACATGGCTTTTGTTTCTCAAACTCGCCTGTTAATTTTTGTTTGAGTCTTTATGGTAATTCAACAGAAGGTTATACCTGTATATACACTCTGGAATAAAGTTTATTGGTATTTGGCAGTTGTTTGTCTTTATCTTGGTATTTCTTCTGCCCTCAGATGTGCTTGATTAGTGTGCATTGGCTAGAAACAAAGCCCTGTGTTTACCTTAATATTGCTTCTGGTTTGATTCTAAAACTTATTTAATCGTatgttaatttacatttatcaatTTAAAGGATTTAAGCTCAGGCCGCTAGGTGGTGCTGCTTCATAGTTTGTGAAGAAGTCGAATCAGGCTTGTGCAGTTTGAGTTAACAAGATCACATTTAAATTTACTCTTAGACTGCTTTAAAGTGAATTATTTAAACTTTGATTTCTAAGTGTATATCAACTGGAACAAATTGTAGTGGACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138919 lncRNA downstream 230029 13761046 ~ 13930294 (-) True G93879
TU138913 lncRNA downstream 255621 13903754 ~ 13904702 (-) False LOC122356386
TU138877 lncRNA downstream 471697 13685947 ~ 13688626 (-) True G93855
TU138489 lncRNA downstream 494063 13665809 ~ 13666260 (-) True G93591
TU138485 lncRNA downstream 496412 13661750 ~ 13663911 (-) True G93588
TU138967 lncRNA upstream 23191 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA upstream 23191 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA upstream 23191 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA upstream 23191 14187539 ~ 14189904 (-) False G93905
TU139118 lncRNA upstream 708084 14872432 ~ 14873014 (-) True G94003
XM_043254756.1 mRNA downstream 1157 14129394 ~ 14159166 (-) False pacs2
XM_043254754.1 mRNA downstream 1157 14129394 ~ 14159166 (-) True pacs2
XM_043254758.1 mRNA downstream 1158 14129394 ~ 14159165 (-) False pacs2
XM_043254755.1 mRNA downstream 1158 14129394 ~ 14159165 (-) False pacs2
XM_043254757.1 mRNA downstream 1158 14129394 ~ 14159165 (-) False pacs2
XM_043254763.1 mRNA upstream 386 14164734 ~ 14171855 (-) True LOC122356233
XM_043254764.1 mRNA upstream 8289 14172637 ~ 14176874 (-) True LOC122356234
XM_043255292.1 mRNA upstream 13802 14178150 ~ 14184493 (-) True lgals3a
XM_043255293.1 mRNA upstream 18011 14182359 ~ 14184486 (-) False lgals3a
XM_043255296.1 mRNA upstream 28166 14192514 ~ 14200444 (-) False cdkn3
TU138946 other downstream 77565 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 248486 13910339 ~ 13911837 (-) True G93875
TU138887 other downstream 463531 13696072 ~ 13696792 (-) False map3k4
TU138426 other downstream 592398 13564422 ~ 13567925 (-) False srd5a2b
TU138208 other downstream 1563021 12557077 ~ 12597302 (-) True LOC122356414
TU139176 other upstream 1076402 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 1086227 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1400269 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1477683 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1588299 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU81130 False 2220 TUCP 0.49 8 CI01000012 5176895 ~ 5180970 (+)
striped catfish (Pangasianodon hypophthalmus) TU354824 True 2955 TUCP 0.52 10 NC_047613.1 22032487 ~ 22067550 (-)
bowfin (Amia calva) TU186901 True 4087 TUCP 0.44 8 CM030141.1 5881023 ~ 5888027 (+)