cdkn3 (cdkn3)


Basic Information

Item Value
gene id cdkn3
gene name cdkn3
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14192514 ~ 14200779 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255294.1
GGACGAGTCCtttaagtatgttttaaaatagccGCGCGTGCGCAGTACAGAGCGGTGTGTCGACTGGGGTGCAATGAGGACAAGTGAGTTTGATTCATCTGACGAAGAGGACTTTGGTGAAGTGGAAGCCACGCCTTTTCAGATCTCATGGTTGTCTCTGTCAGTGGTGGAGTGTTCCCAGTCTCTTGGCATTTGTTCCTTACCTgGATGCCGATataaagaaatcagaagaaaccTGCAGAAAGATGTTGctgagATGTGTGACCAGGGTGTGGAGGACGTGTTTGTGTTCTGTACCAGGGGAGAGCTGGTGCGCTACAGGGTGCCCTGTCTGATAGAGGTTTATTCTCAGAATGGACTCAGAGTGCACCACCTCCCCTTCCCGGACGGAGGTGCCCCGGAGCTTCCCCAGTGCAGCTGCATTCTGGAGGAACTGCAGGACTGCCTCCGGAATCAGCGCAGGACTGTCATACATTGTTATGGAGGCCTGGGCCGCTCAGGGTTAATTGCTGCATGTTTGCTGCTGCAGCTCTCTGTATCCATGACACCCGGTGCTGCTCTGGAGATCCTCAGGGAGCTGAGAGGAGGCGGAGCCATTCAGACCGTCAAGCAATACAACTTCCTCCACGAGTTTCGGGAGAAGtttgaagcatatcaagaaaccAAAGAGCGGCTTTCAGAGAGATCTGTATCCCGATGATCATCCAGATGGTGTAAAAGCAGAAACTTTGATGAATTTGAATTTTCTCCTCTACGattatgaatgcatttgtttcttttgtgatGGCACtttaaaaattctgtatttttataagtCGGTCTAATAATATTGTGCTTAATATATAACTTTAACTTTCCGATCAAATGGGTCTCGTTCAGTAAGTTAGTCTTAAAGGTGCAACAAGTGATTTCTGAGAAACGCTGTTGAAAATTGTAATCAACacccaaacaattaatttagtgaatatattctgtctgtctgttctaTGTACGTTGGAACAAGTTGTGTGTAGTCCTGGCTGTTTAAAATAAGAGAGAAACGTGGATCAGCCAATCAAATATAGGACAGTTGACAGTTGAGGAAGCGGGACTTTTGCTATATTTCACAATGCCAAGACATTCTGTGGCAACATTATCTATAGTGCTGCTGGTGCTTAACCGGTTACAAAAAGCATTTCACCATTGGATATTATGGCTATGATGAAAACATCCCTTTTGGCAGACGCTGTCTTGATAAACCATCTGTTGAAGTCGTTTGCGTTGCATGGTGTGTTCATGAATTTTTGTTGCTTTCAGTGTTTCTTAGAAATCGTTACTGCCTAAATGCCTGCATTGATTCTGGCCAGTCAATTAAATTGagagaaatgtttatatttgtgtcTGGGAAACCATGTGTTGCTTATGTGAGTAACAGTGATTTGGATGgtggatgaaatttttattcAGCTGCTGGCAGTAATTCCTGGCAACGCAATTACTTGCTTATCAAAGTAGTGATTAGTAAGGAAATGTATAAAGTATGGTGGTAACATAATCCAAAgttaaagagaaaaatcaatTATCATAGTCAAAACAGGTCAAATGCTGttgtaaaaaagtatattttgcgtattttatatttgccacatgagaatactttttgataAATTATGACTAATATCCACCTGATTTTTCAATGCAGAAGCATATAGGCAAGACTTAGTTCAATAACATGCAGTAAATTGTGAAATTGTTTAGATTACAAACCAACGTAAATGAGACCTGAAACCAGACCCATACAATTTACAAAGACATGCCTACTTTTatgggaataaataaaattttgcgaattaaagtaatttttatcaCTGGAAAAA
>XM_043255295.1
GGTGTCTCGGGAACGTTCACGCGCTCCTGCACAGTCAGCAAAAGAGCAGTTTTTCGGCGCTCCATTTTACTTCTACTCGCATAGCAGAGGTCTAGAATGTATTGAAATGGCTAGGGACTATACTGGGGTGCAATGAGGACAAGTGAGTTTGATTCATCTGACGAAGAGGACTTTGGTGAAGTGGAAGCCACGCCTTTTCAGATCTCATGGTTGTCTCTGTCAGTGGTGGAGTGTTCCCAGTCTCTTGGCATTTGTTCCTTACCTgGATGCCGATataaagaaatcagaagaaaccTGCAGAAAGATGTTGctgagATGTGTGACCAGGGTGTGGAGGACGTGTTTGTGTTCTGTACCAGGGGAGAGCTGGTGCGCTACAGGGTGCCCTGTCTGATAGAGGTTTATTCTCAGAATGGACTCAGAGTGCACCACCTCCCCTTCCCGGACGGAGGTGCCCCGGAGCTTCCCCAGTGCAGCTGCATTCTGGAGGAACTGCAGGACTGCCTCCGGAATCAGCGCAGGACTGTCATACATTGTTATGGAGGCCTGGGCCGCTCAGGGTTAATTGCTGCATGTTTGCTGCTGCAGCTCTCTGTATCCATGACACCCGGTGCTGCTCTGGAGATCCTCAGGGAGCTGAGAGGAGGCGGAGCCATTCAGACCGTCAAGCAATACAACTTCCTCCACGAGTTTCGGGAGAAGtttgaagcatatcaagaaaccAAAGAGCGGCTTTCAGAGAGATCTGTATCCCGATGATCATCCAGATGGTGTAAAAGCAGAAACTTTGATGAATTTGAATTTTCTCCTCTACGattatgaatgcatttgtttcttttgtgatGGCACtttaaaaattctgtatttttataagtCGGTCTAATAATATTGTGCTTAATATATAACTTTAACTTTCCGATCAAATGGGTCTCGTTCAGTAAGTTAGTCTTAAAGGTGCAACAAGTGATTTCTGAGAAACGCTGTTGAAAATTGTAATCAACacccaaacaattaatttagtgaatatattctgtctgtctgttctaTGTACGTTGGAACAAGTTGTGTGTAGTCCTGGCTGTTTAAAATAAGAGAGAAACGTGGATCAGCCAATCAAATATAGGACAGTTGACAGTTGAGGAAGCGGGACTTTTGCTATATTTCACAATGCCAAGACATTCTGTGGCAACATTATCTATAGTGCTGCTGGTGCTTAACCGGTTACAAAAAGCATTTCACCATTGGATATTATGGCTATGATGAAAACATCCCTTTTGGCAGACGCTGTCTTGATAAACCATCTGTTGAAGTCGTTTGCGTTGCATGGTGTGTTCATGAATTTTTGTTGCTTTCAGTGTTTCTTAGAAATCGTTACTGCCTAAATGCCTGCATTGATTCTGGCCAGTCAATTAAATTGagagaaatgtttatatttgtgtcTGGGAAACCATGTGTTGCTTATGTGAGTAACAGTGATTTGGATGgtggatgaaatttttattcAGCTGCTGGCAGTAATTCCTGGCAACGCAATTACTTGCTTATCAAAGTAGTGATTAGTAAGGAAATGTATAAAGTATGGTGGTAACATAATCCAAAgttaaagagaaaaatcaatTATCATAGTCAAAACAGGTCAAATGCTGttgtaaaaaagtatattttgcgtattttatatttgccacatgagaatactttttgataAATTATGACTAATATCCACCTGATTTTTCAATGCAGAAGCATATAGGCAAGACTTAGTTCAATAACATGCAGTAAATTGTGAAATTGTTTAGATTACAAACCAACGTAAATGAGACCTGAAACCAGACCCATACAATTTACAAAGACATGCCTACTTTTatgggaataaataaaattttgcgaattaaagtaatttttatcaCTGGAAAAA
>XM_043255296.1
TGATTGGACGAGTCCtttaagtatgttttaaaatagccGCGCGTGCGCAGTACAGAGCGGTGTGTCGACTGGGGTGCAATGAGGACAAGTGAGTTTGATTCATCTGACGAAGAGGACTTTGGTGAAGTGGAAGCCACGCCTTTTCAGATCTCATGGTTGTCTCTGTCAGTGGTGGAGTGTTCCCAGTCTCTTGGCATTTGTTCCTTACCTgGATGCCGATataaagaaatcagaagaaaccTGCAGAAAGATGTTGctgagATGTGTGACCAGGGTGTGGAGGACGTGTTTGTGTTCTGTACCAGGGGAGAGCTGGTGCGCTACAGGGTGCCCTGTCTGATAGAGGTTTATTCTCAGAATGGACTCAGAGTGCACCACCTCCCCTTCCCGGACGGAGGTGCCCCGGAGCTTCCCCAGTGCAGCTGCATTCTGGAGGAACTGCAGGACTGCCTCCGGAATCAGCGCAGGACTGTCATACATTGTTATGGAGGCCTGGGCCGCTCAGGGTTAATTGCTGCATGTTTGCTGCTGCAGCTCTCTGTATCCATGACACCCGGTGCTGCTCTGGAGATCCTCAGGGAGCTGAGAGGAGGCGGAGCCATTCAGACCGTCAAGGGATACAATGCTAGGCAGCCATGCTGAGGAAGGGAGGACCCCGGGCTGCCCCAACCATGCCTGATCATGTACAGACAACACATGAAGCCCatgcaaagagagagaaagtgtgtatTCTGCTTTTgcccaacacaaacacattgtaaaaaaaaaaattataataattcaaactGCCAATGGTGACTATGAagacataaatatgtaaaatggcCTCAAAATTCATTTCGCATTTACTTCTGCGAATGATCGGACACATCCAACCAGGAAAAACCCTTTCTAGCGGATACTACGGCTTGACTCTAAATTAACGTGCACTCGCTACACCTATTCATCAATAACCTCATCCGTCACAAGAGTGCACGAAGTAATGACGACTTCTGCATGATCTTAACGGTGCAAATGTTTTACAGCTGAGCCAATTTTAGAAATACACTTTCTAAGTGAGTTGTCATATATGGAGTTAGTCGCTCTGGGTAAAGAGCAAACAGAGGGAGGGACAGAACGGCACATGCATGTTCTGAGCATTTGCAAGTCTTTTCAGTTAACACTTTTCCCTGTAAACCGCTGCGTCTTTCCTACTCTCACATAAACACCTGTGCAGATGACATCTGTGCCCAAACCCACAATAACCAGCCAAACATGAGCAAAATAAGGGCAACCCTAAAGGAGCAATCTGGGTTTTGTTCAGTCGGCAGATGACGGCGTTTGCAGCAAAAACAACCCTCTGATATCAAGCTGTCTAGTTGGCATGATCCAGGTCTGGTCCCTCTGCTTGGCTTGTTTAAACATCTGTGAGGTGTTAGTTAActgaaaagacatttgtaaACACTCCGCTCGTGCACACAGAGAGACTGTTACTGATCTTAAGCTGAATTCTGGTACCAACCTTCAGAGCAAGCCTGacccttttaatttttttcacccTGTCAACTGTCTTTGAGCCAATCAgagaaaaaaggtaaaaagcaaatattaagaaaataagaCACAATGCAAATCAGAAAAATCGAACCAAAGTAGTGTTAGTGTTGGAAAGCaacattcactgcagatgatttAATCGATTAGCAGAACAGTGttgagagaagagaagaaacagGAGTGCATGCATCTTGAAGCATCTCTACAGAACCTCT

Function

symbol description
cdkn3 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Is expressed in myotome and somite. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CDKN3 (cyclin dependent kinase inhibitor 3).

NR:

description
cyclin-dependent kinase inhibitor 3

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14167 CDKN3, KAP; cyclin-dependent kinase inhibitor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255294.1 False 1856 mRNA 0.41 8 14196471 14200439
XM_043255295.1 True 1915 mRNA 0.41 8 14196471 14200779
XM_043255296.1 False 1751 mRNA 0.46 8 14192514 14200444

Neighbor

gene id symbol gene type direction distance location
lgals3a lgals3a,LOC107736502,LOC107683071,LOC107705436,LOC107602963,LOC107553209,LOC107654953 coding downstream 8021 14178150 ~ 14184493 (-)
LOC122356234 synj2bp,LOC107705435,LOC107654920,LOC107736856,LOC107553210,LOC107580248 coding downstream 15640 14172637 ~ 14176874 (-)
LOC122356233 LOC107705434,LOC794838,LOC107553207,LOC107683381,LOC107654921,LOC107602927 coding downstream 20659 14164734 ~ 14171855 (-)
pacs2 pacs2,LOC107654955,LOC107681285 coding downstream 33348 14129394 ~ 14159166 (-)
dcaf5 dcaf5,LOC107705431,LOC107654956,LOC107681972,LOC107553205,LOC107739884,LOC102780996 coding downstream 65429 14113386 ~ 14127085 (-)
sos2 LOC107654947,LOC107602966,LOC107736529,LOC107683816,LOC107553213 coding upstream 8596 14209375 ~ 14224126 (-)
l2hgdh l2hgdh,LOC107682613,LOC107736610,LOC107705441,LOC107654945 coding upstream 26419 14227198 ~ 14232322 (-)
cdkl1 cdkl1,LOC107705442,LOC107736652,LOC107553215,LOC107602970,LOC107683176,LOC105890986 coding upstream 35321 14236100 ~ 14243270 (-)
map4k5 map4k5,LOC107602968,LOC107705444,LOC107736580 coding upstream 42623 14243402 ~ 14267479 (-)
sav1 sav1,LOC107705447,LOC107654943,LOC107736858,LOC107602931,LOC107682971,LOC107553191 coding upstream 76617 14277396 ~ 14285372 (-)
G93905 NA non-coding downstream 2610 14187539 ~ 14189904 (-)
G93879 NA non-coding downstream 262220 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 503888 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 526254 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 528603 13661750 ~ 13663911 (-)
G94003 NA non-coding upstream 671653 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 780217 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1078628 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1403908 15604687 ~ 15605713 (-)
G94145 NA non-coding upstream 1439496 15640275 ~ 15640633 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 28100 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 109724 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 280677 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 287812 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 474200 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 824053 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 1026553 15227332 ~ 15253357 (-)
G94128 NA other upstream 1363838 15564617 ~ 15583917 (-)
G94147 NA other upstream 1441252 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1485491 15686270 ~ 15720816 (-)

Expression


Co-expression Network