RNA id: XM_043255294.1


Basic Information

Item Value
RNA id XM_043255294.1
length 1856
RNA type mRNA
GC content 0.41
exon number 8
gene id cdkn3
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14192514 ~ 14200779 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACGAGTCCtttaagtatgttttaaaatagccGCGCGTGCGCAGTACAGAGCGGTGTGTCGACTGGGGTGCAATGAGGACAAGTGAGTTTGATTCATCTGACGAAGAGGACTTTGGTGAAGTGGAAGCCACGCCTTTTCAGATCTCATGGTTGTCTCTGTCAGTGGTGGAGTGTTCCCAGTCTCTTGGCATTTGTTCCTTACCTgGATGCCGATataaagaaatcagaagaaaccTGCAGAAAGATGTTGctgagATGTGTGACCAGGGTGTGGAGGACGTGTTTGTGTTCTGTACCAGGGGAGAGCTGGTGCGCTACAGGGTGCCCTGTCTGATAGAGGTTTATTCTCAGAATGGACTCAGAGTGCACCACCTCCCCTTCCCGGACGGAGGTGCCCCGGAGCTTCCCCAGTGCAGCTGCATTCTGGAGGAACTGCAGGACTGCCTCCGGAATCAGCGCAGGACTGTCATACATTGTTATGGAGGCCTGGGCCGCTCAGGGTTAATTGCTGCATGTTTGCTGCTGCAGCTCTCTGTATCCATGACACCCGGTGCTGCTCTGGAGATCCTCAGGGAGCTGAGAGGAGGCGGAGCCATTCAGACCGTCAAGCAATACAACTTCCTCCACGAGTTTCGGGAGAAGtttgaagcatatcaagaaaccAAAGAGCGGCTTTCAGAGAGATCTGTATCCCGATGATCATCCAGATGGTGTAAAAGCAGAAACTTTGATGAATTTGAATTTTCTCCTCTACGattatgaatgcatttgtttcttttgtgatGGCACtttaaaaattctgtatttttataagtCGGTCTAATAATATTGTGCTTAATATATAACTTTAACTTTCCGATCAAATGGGTCTCGTTCAGTAAGTTAGTCTTAAAGGTGCAACAAGTGATTTCTGAGAAACGCTGTTGAAAATTGTAATCAACacccaaacaattaatttagtgaatatattctgtctgtctgttctaTGTACGTTGGAACAAGTTGTGTGTAGTCCTGGCTGTTTAAAATAAGAGAGAAACGTGGATCAGCCAATCAAATATAGGACAGTTGACAGTTGAGGAAGCGGGACTTTTGCTATATTTCACAATGCCAAGACATTCTGTGGCAACATTATCTATAGTGCTGCTGGTGCTTAACCGGTTACAAAAAGCATTTCACCATTGGATATTATGGCTATGATGAAAACATCCCTTTTGGCAGACGCTGTCTTGATAAACCATCTGTTGAAGTCGTTTGCGTTGCATGGTGTGTTCATGAATTTTTGTTGCTTTCAGTGTTTCTTAGAAATCGTTACTGCCTAAATGCCTGCATTGATTCTGGCCAGTCAATTAAATTGagagaaatgtttatatttgtgtcTGGGAAACCATGTGTTGCTTATGTGAGTAACAGTGATTTGGATGgtggatgaaatttttattcAGCTGCTGGCAGTAATTCCTGGCAACGCAATTACTTGCTTATCAAAGTAGTGATTAGTAAGGAAATGTATAAAGTATGGTGGTAACATAATCCAAAgttaaagagaaaaatcaatTATCATAGTCAAAACAGGTCAAATGCTGttgtaaaaaagtatattttgcgtattttatatttgccacatgagaatactttttgataAATTATGACTAATATCCACCTGATTTTTCAATGCAGAAGCATATAGGCAAGACTTAGTTCAATAACATGCAGTAAATTGTGAAATTGTTTAGATTACAAACCAACGTAAATGAGACCTGAAACCAGACCCATACAATTTACAAAGACATGCCTACTTTTatgggaataaataaaattttgcgaattaaagtaatttttatcaCTGGAAAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138967 lncRNA downstream 6567 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 6567 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 6567 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 6567 14187539 ~ 14189904 (-) False G93905
TU138913 lncRNA downstream 291769 13903754 ~ 13904702 (-) False LOC122356386
TU139118 lncRNA upstream 671993 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 780557 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 825273 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 1027075 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 1044092 15244531 ~ 15248584 (-) False col9a1b
XM_043255292.1 mRNA downstream 11978 14178150 ~ 14184493 (-) True lgals3a
XM_043255293.1 mRNA downstream 11985 14182359 ~ 14184486 (-) False lgals3a
XM_043254764.1 mRNA downstream 19597 14172637 ~ 14176874 (-) True LOC122356234
XM_043254763.1 mRNA downstream 24616 14164734 ~ 14171855 (-) True LOC122356233
XM_043254762.1 mRNA downstream 32057 14160661 ~ 14164414 (-) False srsf5a
XM_043255288.1 mRNA upstream 8936 14209375 ~ 14224126 (-) True sos2
XM_043256282.1 mRNA upstream 26759 14227198 ~ 14232322 (-) True l2hgdh
XM_043256284.1 mRNA upstream 35661 14236100 ~ 14243270 (-) False cdkl1
XM_043256283.1 mRNA upstream 35661 14236100 ~ 14243270 (-) True cdkl1
XM_043256280.1 mRNA upstream 42963 14243402 ~ 14267479 (-) False map4k5
TU138948 other downstream 32123 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 32123 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 32123 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 113713 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 284634 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 1040311 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 1050136 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1364178 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1441592 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1552208 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile