RNA id: TU139177


Basic Information

Item Value
RNA id TU139177
length 567
lncRNA type sense_over
GC content 0.59
exon number 13
gene id col9a1b
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15227332 ~ 15253357 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACATCCCGCAGAGAGACACATGTGGTGACCTTCCTGCAAGGAGAGAGATATCCGAGGCAGAGTTTCAGAGGGCTGGAGGCGGCCCTGCTGGTCCTCCCGGTGTGCCTGGAATAGATGGTATTGATgGTGATAGAGGCGACACCGGTGAAGACGGTTCGGCTGGTCCTGATGGAGATCTTGGAAAACCTGGTTCTGCTGGACTTCCTGGATTACCTGGAGCTGATGGATTGACTGGCCCCACAGGAGAACCAGGCCCCGATGGCCCCCCAGGACAAAAGGGAGAACCTGGCAAACCTGGACCCAGAGGAGGGGCGGGTGTTGGACCTGATGGACCAATTGGCCCACCAGGACCAGGAGGACTTCCGGGTGAGCAGGGAAAAGTTGGACCCCCTGGAGCCATGGGTGTGAGAGGGCCACAGGGGCCCCGTGGACCAACAGGCCCCCGTGGTGCTGCAGGGATGCTGGGTGGAACAATGGAATTGTGCCCTAACGCATGCCCACCTGGATCTCCTGGTCATCCTGGCTTGCCTGGAATGAAGGGTCATAAAGGGGTGAAAGGAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139165 lncRNA downstream 13276 15227514 ~ 15231255 (-) False col9a1b
TU139147 lncRNA downstream 207537 15025712 ~ 15036994 (-) False lmbrd1
TU139135 lncRNA downstream 248831 14980996 ~ 14995700 (-) True G94016
TU139118 lncRNA downstream 371517 14872432 ~ 14873014 (-) True G94003
TU138970 lncRNA downstream 1054627 14187539 ~ 14189904 (-) False G93905
TU139196 lncRNA upstream 30823 15279407 ~ 15284055 (-) True G94063
TU139282 lncRNA upstream 356103 15604687 ~ 15605713 (-) True G94132
TU139297 lncRNA upstream 391691 15640275 ~ 15640633 (-) True G94145
TU139369 lncRNA upstream 437829 15686413 ~ 15720816 (-) False zgc:123010
TU139381 lncRNA upstream 513967 15762551 ~ 15762843 (-) True G94199
XM_043255651.1 mRNA downstream 145298 15024832 ~ 15099233 (-) True lmbrd1
XM_043256030.1 mRNA downstream 457427 14630594 ~ 14787104 (-) True eys
XM_043256028.1 mRNA downstream 625532 14616799 ~ 14618999 (-) True LOC122356920
XM_043256025.1 mRNA downstream 628606 14614221 ~ 14615925 (-) True LOC122356917
XM_043256027.1 mRNA downstream 631186 14610347 ~ 14613345 (-) True LOC122356918
XM_043254637.1 mRNA upstream 71073 15319657 ~ 15370350 (-) True slc35f3b
XM_043254556.1 mRNA upstream 194481 15443065 ~ 15507712 (-) True zgc:171482
XM_043254645.1 mRNA upstream 298002 15546586 ~ 15561557 (-) True sfrp5
XM_043254712.1 mRNA upstream 361282 15609866 ~ 15632570 (-) True crtac1b
XM_043254690.1 mRNA upstream 405881 15654465 ~ 15681394 (-) True loxl4
TU139176 other downstream 1734 15240750 ~ 15242797 (-) False col9a1b
TU138948 other downstream 1080183 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 1080183 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 1080183 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 1161773 14079532 ~ 14082758 (-) True LOC122356235
TU139178 other upstream 1991 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 316033 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 393447 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 504063 15752647 ~ 15755060 (-) True nkx2.3
XR_006252348.1 other upstream 528895 15777479 ~ 15793538 (-) False LOC122356531

Expression Profile