RNA id: TU139135


Basic Information

Item Value
RNA id TU139135
length 1449
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G94016
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14980996 ~ 14995700 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatcaatttcatttattttattttgtaattgtatagAATTTTTGTGTCATGTCATGCAAGAGGTAGACATCAATGAAGGTATAATGATCTGGAAGGTGGCTGCTAGCATCcttaatttattctttttgtctGGTCTATTCACTGCTTAGCAACCGTTGTTATGGCAATGGAGTCACGGACTGATACAAAAGCAAGAGCAACAAGTTCATTTGATAGCAGACATCGCTTATGGATTCCACCACCATTAAGCTCTGAGATACTGAACACAAACCACTTATGATTAGCGCACAACcatataaatctaaaatgtgAATCTTGTTTAAAACAACCGCTGTGCACTGACGCTCACAAGAAAGATTTCATGGATACCAGTAATTGAATTAATCCACCATCAGTGTGTATCAGAATAGCCAAACTAATAAACGGTTCACATATCTGTCTTTGTCTATCTTCCTCTGTCTTGTCTTTTTCCTCTGCACACAGCAAAACACTGCAATGATGGAAAAAGAGAGCCTTGTTTGTTGCTAGGTAACTGGAGGGATGAGTGTTAGCTcttctgtaatcaatttgatgTGTGCGTAAAGTGGTCCTGTATAAGAAACCCCGGGGAGGTATGGAACATACGAGACAATATTCAAAAATTACCCACTCACATCGTCCACATTTGAGAAGTAAATATCAGCTGCATGATGATGATAGATTGAGTgaaacagagagggagagatgtaGAGCTTGTTGTGGAGATCCAAGCACTTACCCCATCCCAGACAGAGGAAGCGTTTCCGGATGAGCCTGGTCCGAACTTTCCCTGTCACGGCCATATAGGACTGCCAAGCTTCTGTCAAGACCCAGCAGAAGGACGCCAGGAAAAAGAAGTGCAGAAATGCAGTTGTCATCGTGCAAATGCCCTGTCCAttTATTTCTCTGGGTTGTTGAGCCAAAATGGCGAAGGTAGATACCCGATCACATAAGCATTTGGTGTGGGATGCATCGGTGAGCACAGTTCTGCATCCTTTAGAGCTCCAGCTGCCCCAAGAATCGTTCCTACACAACACAGACAAGATTAAATCGCTTTAACAAGCTTTTTCTCTGCGAATCCGTCACTCCAAATCCCCAACTCCGCGCTCTCATCTCATCCACTTCACTTCTCACTTAAGCGACAGAAAGTAAACGCAACGCATTTTAGTGCACATCGCACTGAGTGCGACTGAAGCGCTGAGGCTCTGTGGTGCTGAACGACTCGCTGCTCACAGATACACTCACACCACACAGCAAAATAAACCCGAACCTGCGATTCCTTTGACgcttcttctctctttttgccTCAGCTTTCTCTTATCGCGCCGTATCGATATGTATTTCCACTCGCTTTTCTAATTAGCGCCTTTTGGACGCTTTCCTGAGGGAAAAATTCAGCCTAGAAACGGCGGACGGCATCAGATTGATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139118 lncRNA downstream 107982 14872432 ~ 14873014 (-) True G94003
TU138967 lncRNA downstream 791092 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 791092 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 791092 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 791092 14187539 ~ 14189904 (-) False G93905
TU139147 lncRNA upstream 30012 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 231814 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 248831 15244531 ~ 15248584 (-) False col9a1b
TU139196 lncRNA upstream 283707 15279407 ~ 15284055 (-) True G94063
TU139282 lncRNA upstream 608987 15604687 ~ 15605713 (-) True G94132
XM_043256030.1 mRNA downstream 193892 14630594 ~ 14787104 (-) True eys
XM_043256028.1 mRNA downstream 361997 14616799 ~ 14618999 (-) True LOC122356920
XM_043256025.1 mRNA downstream 365071 14614221 ~ 14615925 (-) True LOC122356917
XM_043256026.1 mRNA downstream 367644 14610347 ~ 14613352 (-) False LOC122356918
XM_043255651.1 mRNA upstream 29132 15024832 ~ 15099233 (-) True lmbrd1
XM_043254618.1 mRNA upstream 231632 15227332 ~ 15253357 (-) True col9a1b
XM_043254637.1 mRNA upstream 323957 15319657 ~ 15370350 (-) True slc35f3b
XM_043254556.1 mRNA upstream 447365 15443065 ~ 15507712 (-) True zgc:171482
XM_043254645.1 mRNA upstream 550886 15546586 ~ 15561557 (-) True sfrp5
TU138948 other downstream 816648 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 816648 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 816648 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 898238 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 1069159 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 245050 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 254875 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 568917 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 646331 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 756947 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile