RNA id: TU138971


Basic Information

Item Value
RNA id TU138971
length 1596
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G93905
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14187539 ~ 14189904 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttcaaaggaaaaaaccttttatttaattattcaaaacagCAGACAAATGTAATTGAGACACATATTGAAAGGTTAACCATTTTCTGGTTTTAAGAGAGAACTTGAGTTATAAATGATCAGGAAAAGCTTCTTcggtcattaaaaattaaatgttaaacacatacacagttCACTACTGTATGGGACATATCACGTGATGTCCACATCGCACAAACCACCAAAGTGAGCAATCAGTGTTTAGTAGGAAACGGCACTAATCACAGGTGTTACAAGTTCTACAGATGTACAGAGATGAGCCTGACCCACATTAGAGCTCAGATTCTGAAAGATGTGAGATCTGCCGAGGTATTACTTATCAATCCCATGATAACATCACTTCCTTAAACTACTCGTATTATTCTGTTAAGCTCTGAACATTTAAGAAGTTTCCAGTGTTTACATTTTGCCaatagattgtttttttttacataaatacagaaatgttgaTACTTTTGCATAAACTGAAGAATCGTGACACCGGCTTTATTCCAATGTTTAGTTGGACAGTGAGAAAGAGTAATTTAGAATAAGAGAGGAATTAATTATGAGATGATTGCCTCTGGGAAAATAACACCATAGCATATCTCTGCCGCTGCGCATCTAAACCTACACGTCTCCAAAAAGGTAGGACAGATCTGTGATTGAGGACATCTAGGTATGATCtcccaaaaacacaaaatcaagtAAAATTAGTCCCAGAATTTTCACACAATTGTCTTCACAGATTTTAATCTTTAGTTGAGATTTATCAGGCCGTGAGCGCAgatttaaaaaaggcaaaaaaaaagaatgaatttatGACAAGTAAACGGTTTCTCCCAAAAATATCAGTAAGACTTCTGTCCTCTTCACCTACCGTTACAGTTCAACAgatatcaaaacaaaataattcatgtttGGTCAAATTCAAGTtagaaaatgcattacaaaggAAGAAAATGTCTGGCCCTCATCAGAGCTTTACACGAAGACCCATATGATTTTATACCAAAACTGGCAAAACATGCCACATTATAGAGTAATACAATGTTTCAAACTGTTGCCGTGTCATCTATCATGAAGGATAGCTGACATAAAAATCACAACATGTCATCCAACTATCATGGCAGTAAGCCTGGACCACCTATGCAGGCCGGTACATACGTTACTGCTTAGGGATGACGGCggaatgattttaaaaatccaagGAATTGTTTAGTGTATATGTGGAATTTgctttcacattttcttttctttgcaccTCAAATTTCTGTCATCTTAAACTGGTACAGGCGGGTTTAGAGTTTGGGCAGAAGCattcaaacatacacaaacagacATTATCAGATGGACTATGGTATTCTCTCCGTTTGGAGGTGATGGTCCCATCTCGGTCACTCTTTAAACATGACTGTTAGCTTTTTCGGTCCTTTCTTAGCGGAAGAAGCCCAGTTTCTCTCGGAGCCACTCCTCAGTCAGGTCTTCAGTGTTCCTGATCTCAAACACCTGAGAGAATGCAGATGcagacaaatttaaaaaaaaaattcccaccAAATCACAGTGTGTAAGGTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138919 lncRNA downstream 257245 13761046 ~ 13930294 (-) True G93879
TU138913 lncRNA downstream 282837 13903754 ~ 13904702 (-) False LOC122356386
TU138877 lncRNA downstream 498913 13685947 ~ 13688626 (-) True G93855
TU138489 lncRNA downstream 521279 13665809 ~ 13666260 (-) True G93591
TU138485 lncRNA downstream 523628 13661750 ~ 13663911 (-) True G93588
TU139118 lncRNA upstream 682528 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 791092 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 835808 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 1037610 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 1054627 15244531 ~ 15248584 (-) False col9a1b
XM_043255292.1 mRNA downstream 3046 14178150 ~ 14184493 (-) True lgals3a
XM_043255293.1 mRNA downstream 3053 14182359 ~ 14184486 (-) False lgals3a
XM_043254764.1 mRNA downstream 10665 14172637 ~ 14176874 (-) True LOC122356234
XM_043254763.1 mRNA downstream 15684 14164734 ~ 14171855 (-) True LOC122356233
XM_043254762.1 mRNA downstream 23125 14160661 ~ 14164414 (-) False srsf5a
XM_043255296.1 mRNA upstream 2610 14192514 ~ 14200444 (-) False cdkn3
XM_043255295.1 mRNA upstream 6567 14196471 ~ 14200779 (-) True cdkn3
XM_043255294.1 mRNA upstream 6567 14196471 ~ 14200439 (-) False cdkn3
XM_043255288.1 mRNA upstream 19471 14209375 ~ 14224126 (-) True sos2
XM_043256282.1 mRNA upstream 37294 14227198 ~ 14232322 (-) True l2hgdh
TU138948 other downstream 23191 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 23191 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 23191 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 104781 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 275702 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 1050846 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 1060671 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1374713 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1452127 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1562743 15752647 ~ 15755060 (-) True nkx2.3