RNA id: TU138208


Basic Information

Item Value
RNA id TU138208
length 2879
RNA type TUCP
GC content 0.39
exon number 5
gene id LOC122356414
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12557077 ~ 12597302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGACGCCCCGCCCCTAAACGCAGAGCTACAGTGTGACGGTTGTTTATATAATCTTGGCGAGCAAATTTGGTTACAGTTTGTCGACATAACAAGGAAGAATCAGCATAGTGTGAGTCAAGTAACCCGGTTTCAGTATGTATTTTAAGATGATTGTGCCGTTTTTGGCCATGATTTTGACCGTGGCGAACGCTGGGATGACCGGAGGCCTAATGGATACAGACATGGAAGATGAAGGAGCTCAGAATGCGTTACAGTTCGCAGTGGCCCACTACAACAGACAAAGCAACGATGCGTTTGAGAGTCGGGTTTCCGAGGTCATCAGTGTCCAAAAACAAGTTGTGTCTGGCCTGAAATACATCTTCAATGTGAACATCGGCAGAACCAGCTGCAGAAAGGGTGACGTTGAAACCCTGTGTGCCATTCATGAGGATCCCAGTGTTGCAAGGGTCACTCCATGCAAAATAACAGTTTGGAGCCAGCCATGgaaaaagtacattaaagtCCTTGAAAACAGCTGCCTGCAGTAGagcttgtttttaatgcagtttacagctttttttaacattcatgcAGCAATAAAATGTACTTGCTATGGGTAATAATGGTAAACCTTAAGTCTTTGCTCTTGATAAAAACCAATTTTTTGATAACAtacacatcatcaacacataaTTGTGTAATCTCATTAGCCATTGCTCCGAAAAAGCTACTTGTAGGAAtttctaaatgataaaatgcatgtttctgTATTACTTCCTACTTTACTAATAAACCATGGTTAATCTCAATATaaaaaaaaaaaaaaaaaaacatttcataatgcCTAACATGTCCAGAATTGTTGGTACCTTTTGTGCAATTGCATGTTAAATAAGAAACGCATTAAAAGTTTTTGGAAAAtcacatgattttatttttcaaatacacAGTCCAATTGTAATGCCTACCCCAGGTTTTCTGCTGTCATTATACTATATTTGTTGGTATTtgcttaataataatcattaattgTAAATGTGGAATAAATACGAATTCTcaattgattaaatgtaaaaaaaaaactgattccaatacaaatgaaatacaaagtttattagcatatattttatctcttatttatttattttttttttttgtcataacaGACTGATAAGAGGGCTGTGGGGTCATTGGTCTGATTGCTCTTAATTTTACACAAGCTGCCCCTCCAAAGACTTTACTGTGTCCCTTCCACCAAGTTTCTCCACAAGGCATGATGGGTCTCTGTCTCCAGGTTCATTAATTTGCCACTCATATTTCAAACCTATAGGGGAAAAAGCACaggaattatttatttaatttactcttaattgtctataaagctgctttggaaTCATGTATACTGTAAGTGCGTTttacaaacaaactaaaatattaagtgtAACACTAAAAAGACCATAGCCGACCTTGCAGTTTGTTCTTAAGAGCAACCATTGAACTTGCATAGACCATTTTGCTCTTTAATGGGGCAGATTCAGGGGCCGATAAGATGAAGACCAGGTCCTCCTTCACGCTCTCCTTGTTCACATAGGAGCAGTCGTACAGGCCGTAGCGGCAATCTTTGGGAGGAAACTTATCGAGGATCTTCTTTAAGACATCTGTGGTCCCCACATCTTTGACTGTCAGGCAGTTGTCATGGTCCACCACGATACTCTTTTGGTCTTTGCTCAAACACATGACCAGAAGTTTTAGCCTTTCCCCAGCATCAGTTCCTGCATGACGCACCCGGATTAAGTCATACTTACTTATCACCTCATCACTGATGGCTACACCTGAGGCCTGGGTGACACGGGGAAGAATATTGACAAAACATGCAGAAGTGATAACTCTACAATTGAACACTTAAGTAGGATGGCATTTTCTTCTATCCGGATGATTTAATGCAGATTGTTGTATAAACCCCATAAAATGATCTTCATTAGATTAGGCAGACATGTGAATATCGCTATacaatttttaatgtatattccATAGCTATTTACCATCTTTAGAAATAGTTCAAGATATGAGGTGAAAATATGAACCAGTCTGCCTTCGCATTCCATTCCTTTACAAACAAGTTGAAACAAGAAGCCGAGTTACACCTCAAAACACTCTGGTGTGAGGAAACTCAGGAATGTCTCTGAATATCTTTTTGGTAACACAcactattgttttaaattgcacatgctgcaatagtatttttattccaGCTTAGCAGACCTAGCCAGACTTTCAGCTCACACAGGAACCGCTATTACTGCATTATTCAATGCTTTAAAGATTCAGCCAAGTCAAGAAATAGTTATAAATCTCatgaccttttttcttttattagttCATTTAGATTAGTTCACGATTAGTTAAAGCCATAAAAATCGCAGCAATGGGAATAACGTTGtttcaaatatgtaatttaGCATGACACAGCCGGTTTTTACCAAATGCTTGAACGGCATGCAAAAACGTACGTTGAAATAAAACTGCCCGAGTCTGAGGACTTACCATGGCTCACGCTTGCTCTGAAACGGAGGAAAGAAGCACGTCGTTGCCTTGCAGAGTGAAGAAGAGTCTCAGGGGCGCGGATCTAAACCCACCCTCTTCAGAACAGACCAGTCCCCGATGACCCGGCTCTCTACCTGCTGGCTGCGTTGCTGCAAACACTTCTAACTACGGGGTGGCTGTGTTAAATATCCTGTCATCGcccaattatttatattttgcgtTTATGATAAGGAAGCCATAAAAGTGATGCTTTATGTCATGTAAACGCTCAGGTGAGTCAGATGCAGTTTGGAGTTGACGACTGAACACAACAGCCTTATAAGGAAGACGGAATCTGACATAAACCTTATTTGGC

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0071345 cellular response to cytokine stimulus biological_process
GO:0034097 response to cytokine biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138213 lncRNA downstream 22009 12533986 ~ 12535068 (-) True G93394
TU138211 lncRNA downstream 23191 12531981 ~ 12533886 (-) True G93392
TU138169 lncRNA downstream 126391 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA downstream 126391 12429222 ~ 12430686 (-) True tmem234
TU138139 lncRNA downstream 150144 12401678 ~ 12406933 (-) True LOC122356854
TU138291 lncRNA upstream 507777 13105079 ~ 13105684 (-) True G93460
TU138302 lncRNA upstream 559628 13156930 ~ 13158437 (-) True G93470
TU138314 lncRNA upstream 564843 13162145 ~ 13162370 (-) True G93471
TU138315 lncRNA upstream 565187 13162489 ~ 13162727 (-) True G93472
TU138359 lncRNA upstream 611108 13208410 ~ 13224516 (-) False LOC122356418
XM_043255846.1 mRNA downstream 95098 12457871 ~ 12461979 (-) False btbd6a
XM_043255845.1 mRNA downstream 96077 12457871 ~ 12461000 (-) True btbd6a
XM_043254541.1 mRNA downstream 112199 12441039 ~ 12444878 (-) True LOC122356084
XM_043254688.1 mRNA downstream 126299 12429197 ~ 12430778 (-) False tmem234
XM_043255917.1 mRNA downstream 157549 12395781 ~ 12399528 (-) True nusap1
XM_043255072.1 mRNA upstream 12870 12610172 ~ 12612682 (-) True LOC122356399
XM_043255051.1 mRNA upstream 94092 12691394 ~ 12702158 (-) True flrt3
XM_043255044.1 mRNA upstream 500389 13097691 ~ 13129712 (-) False kif16bb
XM_043255043.1 mRNA upstream 500389 13097691 ~ 13129712 (-) True kif16bb
XM_043255068.1 mRNA upstream 569137 13166439 ~ 13179453 (-) True ism1
XR_006252291.1 other downstream 126299 12429197 ~ 12430778 (-) False tmem234
XR_006252352.1 other downstream 758045 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 1025768 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1338092 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1621746 10924944 ~ 10935331 (-) True G92819
TU138426 other upstream 967120 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1098770 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1313037 13910339 ~ 13911837 (-) True G93875
TU138946 other upstream 1482230 14079532 ~ 14082758 (-) True LOC122356235
TU138948 other upstream 1563021 14160323 ~ 14164348 (-) True srsf5a

Expression Profile