RNA id: TU138139


Basic Information

Item Value
RNA id TU138139
length 4288
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC122356854
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12401671 ~ 12406933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCAGAGCACACGGGACTGAAATGGCGTAGCGCGCGGTCCTCCGCCGCAGCAGTGCAGCGGGGCCAGGCTTACCGAACATCTCAGAGCCTGGCCCGCCGTGCTCAGCCGACGTGTACGATGGAGGTGACTTTTAGCTCCAGTTCCACTCGGTTCGAAACCAGCACGAGATCACCGGAGACGTGCCCTTCATATGTCATATCAAGAAGAGAAAGGAACAGTCTTGAAAGGAACTCATGACCAGATGAGACCATCATGTCTTTGTTCTTCAAACTGCTCTCCATCCCGTTAAGTTGTCTTTCCTCCAGCATTATTTCAGGGAAATGTTTGTTCAGCATACCAACCGTTAGTGGTCTATGAACATATCATCTCTGCACTTTGGAGACGACGACTGAAGTTGTTTTTATCCATGAAAGAACCATAAGCTCTTCATGTgtccaaaaaaaagtaacacaattGTGCCACATTACAGAGCCATCTTCTGGTCATATCTCTTTATAAACCAATTTcaatatagtatttataaagtTGCAGGTTGTGTTAGAAGTGAAAATGGAAATAGTGGAAGCGCACTTGCTTTGCAGGtaaaacaaatgcacatttcaaaactaaatcaTGCAAGCAAGATGAAGTAGCTTCATCCAACTGTTTTATTATCTGCAGATTAAGTGCCTAGACACGTCTCTTTTAAAAGCTCCATGGCTTAGCTTTAAACCTACCAGTAAAGCACTATTTTggtcttatttaaaaatggctgAGAATTTAATTTCTGAGACAACAAACTGTAGACAGATAGCTGTTCTCTTAATTCAGAACTCATATTGGTGCTTTTGCAAAACCATGAaccatgctttcatgttttcTATGTACTTGTACTGACAAACCAAGACAGACAGTGGCACACTGACCTGAGCATAAGCTTTATAAATTCCACAGTTAAACCTTTCTAGTGGGAGTGGgacataatgaaatataattattttactacCTCAGAAGTTACCACAGCTCAGACCCACACAGCGAGCACTCCGATCAAACTATATTCACATGCTTTTCTCATAGTAATGTAAATAGAGTCATTGTCTGTCAAATGGTTTGGAAATCAGTTGGaagaggattttttttcatgtacgttattttattaataggttttcacaaaaatcatATACAGACCTTGTAGTTCACGGACACTGGCAGACAAAAATttggaataattatttttttaaaactatttttgaaaatctcctaaccaaggctgcattgactttattaaaattacagtgCAGCAATActgggaaatattattacaatttaaaataaatgttttctatttataatgtgtgtaatttaatcctgtgatagcaaaactgaatttttttagcAGTTACTTGAATCACAAGatcctttattattgttgaAATCAGTTTTTGCTGTTTAAGCTTTgagaatatgaaatatttttacagaatttctTGAGCAAAAGAAAGATaactaaacagcatttatttgaaatagattttttttgttacattattgTCTTCACTATTACTTTCAATCAATTATATtacattcttgctgaataaaagcatttatttaaaaaaataactttggAAATATGTCACAGTTTCCATATAAGAAACATAAATTATGATATgttgattaaaaatagaaaatggttTTGTAGGATAATGGATAAAGGATAATgtctgctgaaaatttagctttgccatcacagaaataaattacattttgaaattgaaaataagCATAAGACATCTAAAAATAATCTGAATTATTCCAAAGGTTTGGCTACCAGTATCTATTTTTCCTACATGTTTTCCAAGAGAATATTCATAGTGAAATAATAGTGTCATTTTCATAGTATCCTCATTAGGCCTGAAGAAAGGCAGTAGCATGGTTAAATGTTAGaccacaacatttttaaatagttaatagtttagtatgttttaatgcatcatcTCAGATAGATTATAGGAAGTTGGTCACAGCCTGTGCTTGGTCCTCAGCAACAGTGCACTGTGAACATAGGAGTTTAACTTCATCTGTGTGAAAATGTACACAGTTTTTGTTTCGTTTATACGGTAGTTTCTGTCACATAGATTGGTAGAAATCTAGTGTCATGTACCGAGTATAAATTTCCATGGGAGAAAGAGTAGTAAGGCCTCAGTGTGGGAAATGTGCaatatttgtttctttcctttgtcttgttttgagaTGACTATGTATATTGTACAAACAAGTGACAAGTTGTtcgcaaaaacaacaaaatcaccAATGTCTTCCATTAAATGATGTATAGTTTCATCCGCTTGCTTTAGGGTGGCGGGATTTGTAGTGCCAGCATAAACATGGCCATGCATGTATGGTAGCGATGCTTGCTGAGTTTAATAGTCGTAGTGACATTCAGTATATGCTATAATAAAGtcgtttagaaaataaaataggcAGATAACGATTTAGTTAGTAACCACCATGGAGCAGCATCCACATCTTGATCGGTTTGATTAAAAGGCGACTAGGCGAGTCATTTTCACTCATGCAGAGTTTGTTCGTTTTAGGTTTTAATCGGCAATCACGGTTGTTTATTCACAGGTAATCACTATTAGTTAATGTGTTGTAGCATGCTGAGGATTAGAAAAATGGCGGTTGGTATTGACATGCAGCTAGCCATGctgaaatacatatatatgtttcatAAGCACTGTGTGAGTTTGTCCTAGTTTGTACTGTGCAAAATTAAGTTCTGGGCCCAAAATAGTTGACTCGGATCAAAATGACAGTTCCCTAACGGGCAGAAAATGTAGCTCGTTGGCTTAGAAGTGAAGAGTTTAATTTTGTACCTGTTTCAGAATTGATTGGAAACAGTTGATCCTGATGCTATTTGGTCTGTAACAATCGGACACAAAAAAGACTTGTAGACACAAAGTATTCTCGTCCTGATTCGAAAGGGTAACCTAGAACTGTGTTTGTATTCATACCTCTAATATTGCATTCTCCATCAGGTATTGTTGTCTCAGACTAGAGCTGTGGGTAGATTATTCCTAGTAGCAGAAAACTTTAGATTTTAAAGTAACATGTATTATATTAAGTGGCATAAAGCAATTATCAAAGCATTGTAATGTGGATAAATACCTCAATGACTGGAATgcaaactatatttttaaatatactcaaAGATATGCAAGCCATGATGTGTATTAAGTTCAACGTTTAGAAGCAATAATCAGTTTATGCATGAATTATAGTGTCGGAGTATTCAGTGGTTTTTGTGAAATAGATTCTGTAGCATATTTGTGACCAGTGGTTAGTGTTTTATCCAGAACGTCCCATTGCTCATATCTGGTAGTACAGAACTAGCTGTTAACACCCCCATTATTCGTTGACACCAAATAAATAGTGAAGGTAGCAACAGGGGTCTGACAAATATGAAAgacccttttttattttggacagGTGGAAGAAAGTTCATAactagtaaaaatatatatgcaggGCTTATGCCTTTCTATTGACCTTGCATGTTTACATACAAACCATTGTGGAACGCACATAagctgtatgtgtatatatacagattattttcattaacagCAATATGAGCAGTGTTCTGGTAGCAGTTTGTGACACTCTTAATGATTCATTGTCTAAATCCTGGGTAAACAATATACCACAATACATtcacgaaataaaaaaaaagatccattGGGAATTtactagtattttttttaataagagtgCAAAAAACATCTGTTAATGCATGGTAGATAAAAGTGgatacaaaatgttttgtgctgCATGCAATAACTAAGCTTTGCTTGAACATATTTATGCAGAAATGTGATAAATCTATGAGTGGACCAATGTCGTGACTTTCTTTTCAAATGCATGAAATCCCAAAGGTTTATCGCTGCTGTAAATTATTCAAAGacgtattcattaaaaatgttacttttttgaaATTGAGTATTGTATGATGAAAATGTAACAAGTCTGTGATGCAAGAGGCAAGATACAGTATGTTTTAGCAAAACATACGATTGGggagtttaaaataaaaagagttattaaaaaaaaagttctttttcCATGTTCAAAGCAAATAGTGAAGAACATTTATATGCTTTGATGACCTGATTTGTGTTGCTGATTTTGCCTCTGAATGTGAAACTCTATGCTTAGTCTGATCTATGCACTACAGATGCGCCCCGCATGattttgtacaaaacaaaattaaattttagcaataaaaaagCAGCATGGTGCCATA

Function

GO: NA

KEGG:

id description
ko00515 Mannose type O-glycan biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138098 lncRNA downstream 116624 12278454 ~ 12285054 (-) True vti1b
TU138100 lncRNA downstream 116624 12278567 ~ 12285054 (-) False vti1b
TU138102 lncRNA downstream 116624 12278567 ~ 12285054 (-) False vti1b
XR_006252425.1 lncRNA downstream 221459 12151847 ~ 12180219 (-) False LOC122357111
TU138169 lncRNA upstream 22289 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA upstream 22289 12429222 ~ 12430686 (-) True tmem234
TU138211 lncRNA upstream 125048 12531981 ~ 12533886 (-) True G93392
TU138213 lncRNA upstream 127053 12533986 ~ 12535068 (-) True G93394
TU138291 lncRNA upstream 698146 13105079 ~ 13105684 (-) True G93460
XM_043255917.1 mRNA downstream 2150 12395781 ~ 12399528 (-) True nusap1
XM_043255916.1 mRNA downstream 9929 12379697 ~ 12391749 (-) True rtf1
XM_043256218.1 mRNA downstream 22461 12373606 ~ 12379217 (-) False golga5
XM_043256217.1 mRNA downstream 22461 12373606 ~ 12379217 (-) True golga5
XM_043256402.1 mRNA downstream 28687 12354697 ~ 12372991 (-) True trip11
XM_043254688.1 mRNA upstream 22264 12429197 ~ 12430778 (-) False tmem234
XM_043254541.1 mRNA upstream 34106 12441039 ~ 12444878 (-) True LOC122356084
XM_043255846.1 mRNA upstream 50938 12457871 ~ 12461979 (-) False btbd6a
XM_043255845.1 mRNA upstream 50938 12457871 ~ 12461000 (-) True btbd6a
XM_043255042.1 mRNA upstream 153225 12560158 ~ 12575184 (-) False rrbp1a
XR_006252352.1 other downstream 602646 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 870369 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1182693 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1466347 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 2211168 10185761 ~ 10190510 (-) False LOC122356841
XR_006252291.1 other upstream 22264 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 150144 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 1157489 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1289139 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1503406 13910339 ~ 13911837 (-) True G93875

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013864 False 4621 lncRNA 0.35 3 NC_007124.7 33261131 ~ 33267600 (-)
grasscarp (Ctenopharyngodon idella) TU83418 False 3853 lncRNA 0.36 3 CI01000012 7395368 ~ 7400277 (+)
eurasian perch (Perca fluviatilis) TU273069 False 4161 lncRNA 0.39 3 NC_053131.1 10360396 ~ 10365107 (-)
striped catfish (Pangasianodon hypophthalmus) TU66426 True 4341 lncRNA 0.40 3 NC_047597.1 32357293 ~ 32362904 (+)
mexican tetra (Astyanax mexicanus) TU301882 False 3114 lncRNA 0.37 3 NC_035921.1 38901232 ~ 38906834 (-)
mexican tetra (Astyanax mexicanus) TU83418 True 1295 lncRNA 0.47 2 NC_035903.1 4010788 ~ 4013340 (-)