trip11 (trip11,LOC107655016,LOC107588575,LOC107585490,LOC107675555)


Basic Information

Item Value
gene id trip11
gene name trip11,LOC107655016,LOC107588575,LOC107585490,LOC107675555
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12354697 ~ 12372991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256402.1
TGTGCTGTCCACGTCTTCTCTGACGGATGATCAGTCCGGCTGTGATGGCCGCGGTCGAGCTGGCACTTTAACCGCGTGAAAAACACAGCGACCCAAAACAAACCCGTATCGGAAACCTGCCTGTCCATATGTGGATATAACCCGGCAACCAGATCTTCGTGATTCCTGCGGATTTGATACGTAAAACGCGgcgttttgtctttgtttatgtCATGAAGTTTTGAACCAGCTGGAATCCGGATCCGCTGCTGATTATCCATTATTGCGtctattaaaaacaagcaagcGCAAAACGctagttattattaattagcttGAGTACATGAAGCCCTCGCTCGCACGGATCTGTGCTGTcaatgcattgtgtgtgtgtttgagaggcCCGTGTCGGTGATTAAGGGTTAGATCCGGTTCGGTTTATCATGTCGTCTTGGCTGGGAGGGATAGGCTCTGGCCTGGGTCAGAGTTTGGGTCAGGTCGGGGGAAGCTTGTCTTCTTTTACCGGGCAGATCTCTAATTTTACCAAAGATATTTTGCTGGAAAGCGCCGAGGAAGTGGGAGATGCTGCCTCTGAGCTGCAGGTGTCCAACTCTAGATTGCAGGAACTGGAGACTTTATATGCAACACAAAAATCTGAGTATGATCGCTTGCGAAGAATAAACTCTGAGCTGGAGGAGAAGCTAGAGGCAGCAGAGATTCAGGTCAAACAGCAGTCAGTAGAATACAGAACCCTCCTGCAACAGAAAGAGGTGGAGATCAGTCACCTCAAGGCCCGCCAGAGTGGTCTGCAGGAGGAGGTCCAGAAACTCCAGCATTCTGCTCAGGCTTCAGGCAGCTCGTCATCCTCTGGTGCTGCTGTACTCCCTGTTACCACTGCTGCCACTACCACTACTTCGTCTTCCTTTCTGCACCGGTCTACAGCTGTCCATCAAGGCTTCCATGGTGATGAGGTGGACCTTAGTGATGTCCTGTGGTCACAGCAGGAAATTAATCGTCTTTCTAATGAGGTGCATCGTTTAGAGGCTGAAGTTGCCCACTGGAGAAGAGTTGCTCAGGCATCCAAGCTACCAGCAGTTGATGGTAACGGAGACCAGGGTGAAGttctaaaaatgcaaagaatGATCAAGGAGCTGAGAGAGCAAATGGCACGGGAGGTGGATGAACACCAGCATGAACTGGCAGCATTACAGGATGCCCAGAGGCAGAAAATGGCTGAAATATCAAAACGGCACAGAGGGGAGCTGGCAGAGTATGAGGAGAGAATCGAGGAGCTTGAGGAACAGCTTCAAAGTGAAGGTGGAAGTGTTGTTCAAAAATCAACCACAGTACAGGACTCTGCCAAACTTCAAGAGTTGCAATCGACCATGCAGTCTTTACAGGAGGAGGTGGAGCTTCAGCGCAAACAGCACAGTGATCTATTGGCCAGTTTGGAGGAGGCAGAGTGTCAGAAGGCCAAACTAGAGAAGGAAAAGGAGGAGGCTACAGCAGAAAATGCAGAATTGTTGCAGAATTACAGTCGCCTTCAGAAGTCTGTAAACGAACTCCAGGCTCGAGTACAGGAACAGGAAGGGAAGTCTATGCTAAAAGCCCAGCATGACAATGAGATACAAACCCTGAAAAAAGCTCTGGCAGgtGCAGAGAAAGAGATGGCTAGGTTGAGAAGTCTTACTGAGagCAATCCTACAGAAGAAGTAGAACATGCTGACATACTGGAGCTCAACACAATCATTGATACCCTCAGAAAAGAGAAGGAAGaggtggagagagaaaagcTTGCATTAGTTCAAAGACTGACCAAGGTCGAGGAGGAACACAAGACAGGAGAGTCAGAAAGTGTTGTGGAACTGTCACAGGAAGTTTTAGACCTAAAGAGTCAGCTAGACCAACGGGAGCAAGCTCTAAAGCAAGCCCATCTTGATATAGAGACATTTAGTGCTGAACTGGAAGAACTGGACAAGCAGAACCAGGAGGCCACACAGCATCTTATTGCAGAGAAGGAACAGCTGTCCCTGCAGAAAACCCAGGCTGATGCAGAAAATTCCCATCTTCTGTCAGATCTCAACTCCTCCCTTGACCAGAGACAAATCCTTCAACAGGAACTGGAAGCTCAGGGGGAGAAGTTAAGTCAAAGTGCCTTCTCCTTGAATGAACTGCACATGGCAAAGCAGCAACTGGAAATCACAGTAAAAGAGTTGAGGGAAAAGTTATGCAAGTCACAGGATCTGGGCAAAGAACTGCGTCAGGAGACCTCTGACCTCAAGAGGGCGCTTCAGCAAAGAGAGACAgaactttctgcattttgtGAAAAATTAAGTAATTCTGGGGAGCAGGGGTATGTGGTAGAGGAACACAGGAAGGTACTTGAGACAAGGGATAAAGAGATCCAAGACTTGAGAACAGAGCTATCAGAAGTGAAGGCCTCCTATGAAAGGGCCATTTCAGAGGATTTCGAATTGAAAATTGACAATAAAAAGTTGAAAGAAGAGAGCACTCAGGCTTTAGAAAAGATTGACAGTTTGGAAAAGCAGATTCAAGATGGTCAAGCCTCTATAAGCAGGCTGTCACTGGAGAAAGATACCCGCATTGAAGCCTTGAAACTAGAAAAGAGCCAGTTAGAATCTGAGCTAAGCCAGACAGAGAAGCGACTATCAGATCAGGCCAAACAGTATCAACAAACCATTGACGAACTAACCAGAGCACGCTCTCTGGATGCTTCCGCACTACAGACTGAACATGAGCGAATGGTGAAACTGAATCAGGAAAAAGATCTTGCAATTGCAGAGCTCAAGCGTGAAATGGAGCAGATGGCCTCTGACCACAAAGACACCAGTGAGATGCTGGACATCACTGTGGCAGGCCAAAATCAACTCACTGAGCTTTTACAGGAGAAGGACACCTTTGCAGATACCCTAAAAGCTCAAGCTGCAGAAACACAACAGGAACTAGAGCGCAAGTTCCTGGGTGCAACTCAAGAGTGTGACTCTCTAAGAAAGTCAGTGGAGGAGAAGGACAAACAGCTTGGAGCCATGAAGGAAGAAAACAGCCATCTAAAAGAAGAGATTGACCGTCTGAGAGACCAGCAGAGCAGACCACCATTATTGTCAGAGCCACGGACACTGGACATCATCACAGAGCTTGAGACTGAGGTGGCCCAGCTCAAAGCTGCCAGAGATCAGTTCGAAGAAGAGGTCCATTCGTTGCGGAAGGTATCAGAAGAGCAGCAGGCCACAGCGCTGCAGTCCCAGCGATCTCTGCAAGTGCTACAGAGTGAACTTGAGCAAGCACGGACAAGACATGAACAAAGCTCACTCAATTACGAAAGACTTATCACTGCTAAGGATGAGGAGATTGTCCGGCTTCAATCAGAACTAGAGGGCCTGAGCACACAAGGACAGAGTCAAATACAGTCAGTAGAAATCCTACAGGAGGACAAGACCCAGTCGCTGAATGGTGAAAATGGTAACGAGAAACATGACCTTTCGAAGGTGGAGATTGAGAAGCTTGTGAAAGGCATAAAGGAGAAAGAGACTGAGATCAACCAGCTAAATGAGAAGAACCTGTCTTTAACTAAACAGCTTGACCAACTTGTAATCTCTCAAAATGAGTTGGGAAAACTCTCACAGATAGTACTTCAAAAAGATCTAGAAATCCAGGCGCTCCATGCTCGGGTGTCTAGTGGTCATGGTCAGGATGTGGTGTTCTTGCAGCAGCAGTTGCAGGCATATGCGGTGGAGCGTGAACAGGTGTTGGCCGTGCTCAACGAGAAAACCAGAGAAAACAGCCAGTTGCGTTCGGACTATCATCGCATTATGGACATTGTTGCTGCCAAGGAAGCTGCCTTGTTGAAGCTCCAGCAAGAAAACCAGCGGATTTCCACTATGAGCGACCCTTCAGGCAGTCAGGAGATGTTTCGAGAAACCATTCAGAACCTCTCCCGCATCATACGTGAGAAGGATATCGAGATTGACGCCTTGACTCAGAAATGTCAGACCCTGGTCTCTGTCCTTCAGACATCAGGTGCAGGCGATTCTGTAAGTGGTGGCTCGGGGGGTGTGAGCAGCAACCAGTTTGAGGAGCTCCTACAAGAACGTGACACTCTCAAACAGCAAGTGAAGAAGATGGAGGAGTGGAAGCAGCAGGTGATCACGACTGTGAGGAACATGCAGCATGAATCTGCTCAGCTACAAGAGGAGCTGCTGAAGCTGCAGGGGCAGGTTTCTGCAGATAGCGACTGCAGCTCAAAGCTCTCAGTGGATTACTCCAGACTTATTCAGAGCTATgagcaaaaagagaaaaagctgGGATTGTTGAGTCAAGAGCTGGCACAGGTGCAGCAGACCATCAGCCAGCTGAGTAGTACCAAAGACGTCCTTCTTGGGAAGCTTGGCAGTGTCAAGCAATCTCCAGAAGCTTCTGCTATGATGGCTACCTAAGCCTTTGCCCCTCCAATCCTGAAGGGGGCAGCACCAACAGGTCAAGATGAGAGCCTACATCAGGAGTTGAAGTCAATGCAGAGAATTTTAGCAGAGAAGGAGAGCATGATAAGAACTCTGCAGGAAAACAATCATCGTTTGTCGAATTCTGCATCTCTGTCTGAAAGTGAGCAAAGAAGCCATGCAGAGGAGCTCAAGCAGGCTAGAGAGAAGCAAGAATCTCTACAGCGCTCCCTCAGAGAGAAAGATCTGCTCATTAAGACCAAGGGAGACCAACTTAGTCAGgtgAGTGAAAGTTTACGTAATCGTGAAAATGACAACGAGGTCTTGAAGCAGGCTGTGACAAATCTGAAGGAGCGTGCCCTGATACTGGAACTCGATGTGAAGAAGTTAAAGGAGGAGAACGAAGCAATAGCAGCAAAAGCTcgtgagaaagagacagaattTCGTGCCCTGCAGGAAACCAACATGCAGGTGTCACTGCTGCTTCGGGAACGAGAGTTTCAGTTCAGTGCTGTGAATGAGAAGGCGTCTGCTATGGAGAAGATGCTGAAAGATAAAGAGCAGGGTAAATCTGGAGAGCTGAACCAATTGTTAAATGAAGTTAAGTCAATGCAAGAGAAGGCAGTGTTGTTTCAGCAGGAAAGAGATCAAGTGATGATGGCcctcaaacaaaaacaaatggagACAACTGCTCTTCAGAGTGAGCTTCAGCACACACGAGATAAAGAGCAGCGCCTGAAGCAGGAAGCGGAGCGGTTGCGCAATCACCTGTTAGATATTGAGGATTCGTACACACGTGAGGCTTTGGCAGCTGAGgacagagagggagagctgAGACGCAGAGTGGCACTCCTGGAAGAGCGGTTAACATCTTCCTCTAATGCTGTGGAGAGTGCAAGTCAGCAGGCTAGTCTGCAGGTCGAGTCTCTTCAGGAGCAGCTGAATGGTGCTGTCAGACAGAGAGATGAAGCGCTTATTCAGCTTCGTGCTTCTCAGGATCAGGTCAACCAGTATGCAGTGTCACTCTCTAACCTGCAGATGGTGCTGGAACAGTTTCAACAAGAAGAAAAAGCCATGTACTCAGCGGAACTGGAAAAGCACAAGAGGGAGAAGGAAGAGTGGAGAACTAAAGCAGAAAATCTTCAGGATCAGGCAGCCGCTCTCCAAATAAACCTGGATGAAGCAAATGCAGCTCTAGAATCTGCCTCTCGCCTCACTGACCAGCTGGACCTCAAAGAGGAAGAGATAGAAGATCTGAAGAAACAAGtgGGTGTGAGACAGGAGATGTTGGAAGAGGCTCAGAGAAAACTGATGAACCTCCTGAACAGCACCGAAGGCAAAGTGGATAAGGTTCTGATGAAGAATCTTTACCTGGGCTATTTTCACAGCCCCCGAAACAAGCGCTCTGAGGTGCTGAGGCTTATGGGTAATGTGCTTGGTTTGGACCGAGATGAGGTGTCCGAGTTGTTACAGGAAGAGAGTAAGAGTGGAATGACCGGATGGGTCTCGAATTGGTTGGGAGGCAGAGCTGTTCAGAGTGTACCCAACACTCCCCAAAGacccacacatacacagaacCTTAATTCGTCCTTTTCTGAGATGTTTGTGAAGTTCTTGGAGGTGGAGTCTACTCCTGCACTTCCTGCCCCTAAATTACCTGTTTATGACATCAAGCCTCTGAGTGCACCCCCACCTGGCCGGAGTACTGCAAGCACACCTGCATCAGGTGTTTCAGGCCTAGGTAAGCGCACTGGGGATTCAAATCCCTTCCTGGCACCCCGGTCTGCAGCCGTACCCCTCCTTAATCCCGCAGGGGCAGGCAACATTGCAGGCGCTGGGGGCCACCTGCTCATGAAGCCTATCTCAGACGCCCTGCCCACCTTTACACCTGTACCCGTGTCGGCTGAGGCCAGCGGAGGAGCTGTGCTCAAAGATTTGCTCAAGCAGTGATGTCAGCCACCTGTACTGCCACTCGAAGCACTTTAGCTTATCAGGACACTACATTCCGGCAGATGGAAACCAAAAACTGGGCCATGTCATGGAttcaaatatttactaaaatggCTGATTGCCATCGGAATAAAAGAGATAAAGCATCTAAGGGCTGCCGCGCTTGTTAAATTTGACTAAACTGAGGCCTAAGTTTGACAGAATCGAGTTCTGTTTGCAAGCTGGGGAAGATTACATTATCGAATATTCTTGTGACCTTCTCCCAACATTTATTTAACGTCGTGCAAACATTCAGCTTGTCATTTTTAGACAAAGAGAggtgtttaatgtttttctagTGTGTTGAGAGATTGTCTGATGCTGTCTGGCATCCACTACGCAAATGGATTTATTAAACCTTTTCCACTTCTGCAAAAACGCTACAGATAGTCTTTCAAAATCCTCCCGTTTTGAGCGCTATGAATGGTTGGCCGTATGGTATGGCAGGTACAATAGCAGTTAATCGAGAAGTGACTTGGATTTAGACTGCTGCTCATGCTCACATGCAGTACAAGCCTGcagttatgttatttatttgtatatctaTCATATTCTTCACTGTTTATGCAGTGGGCATAGGCTAAAATGTCTACAATATTCAGAACTTTCTAAGGTAGAAAGAAACGTTATGTATATACAGTTTGgaaaacatgcacacataaagaaaaaagagagtgcaaaTTAAGTGTATAAATTacctgtatattttaaaattgtttaataaagaaatgataCACCTCTGTTATAATAAACATTAGTTTATCATAACACAGGACTCCTAATTCAATGGGTTTcaaccaaatataaaaaaaacggCATTTCCTTGAGGCCTAATAtgaagaattgtttttttttgtttgttttgttttttgaaaaaatggCCTTAGTAATTCTCTTTTTGGTTACTATATCTTTCATAAAAGTTGGGTGCACTTGATTATATAGATTTAGAATGCGTTTATACATTTTAGGGGATATATTTTGCGCTggtgtttatttaaagttgaTCAGtctttttgaagtttgaaaaactgctcataaaaatattcaacaacAGTGTTTCTCTTTTCTGTTGAATAAACTATTCTCTGCtatgta

Function

symbol description
trip11 Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi organization and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be active in Golgi apparatus. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hypochord; and nervous system. Human ortholog(s) of this gene implicated in achondrogenesis type IA. Orthologous to human TRIP11 (thyroid hormone receptor interactor 11).

NR:

description
thyroid receptor-interacting protein 11

GO:      GO:0000042

KEGG:

id description
K23368 TRIP11; thyroid receptor-interacting protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256402.1 True 7523 mRNA 0.46 22 12354697 12372991

Neighbor

gene id symbol gene type direction distance location
fbln5 fbln5,LOC107585489,LOC107724235,LOC107588577,LOC107655017,LOC107705389,LOC107675578 coding downstream 3171 12341913 ~ 12351526 (-)
LOC122357133 tc2n,LOC107705388,LOC107654930,LOC107724545,LOC107588684,LOC107675517 coding downstream 12921 12333170 ~ 12341776 (-)
plek2 plek2,LOC107655018,LOC107705386,LOC107585533,LOC107724538,LOC107675532 coding downstream 23363 12327780 ~ 12331334 (-)
zfyve26 zfyve26,LOC107705383,LOC107655019,LOC107724201,LOC107675540,LOC107585484 coding downstream 31996 12298229 ~ 12322701 (-)
rbm25a rbm25a,LOC107705380,LOC107588581,LOC107681542,LOC107585485,LOC107757092,LOC107675541 coding downstream 77479 12266018 ~ 12277218 (-)
golga5 golga5,LOC107588574,LOC107705390,LOC107585491 coding upstream 615 12373606 ~ 12379217 (-)
rtf1 rtf1,LOC107655008,LOC107588567 coding upstream 6706 12379697 ~ 12391749 (-)
nusap1 nusap1,LOC107585493,LOC107724270 coding upstream 22790 12395781 ~ 12399528 (-)
LOC122356084 LOC107705397,LOC107654925,LOC107588565,LOC107675586 coding upstream 68048 12441039 ~ 12444878 (-)
btbd6a btbd6a,LOC107724364,LOC107588564,LOC107705400,LOC107655006,LOC107585501 coding upstream 84880 12457871 ~ 12461979 (-)
LOC122357111 NA non-coding downstream 107757 12121940 ~ 12246940 (-)
G93315 NA non-coding downstream 187799 12114926 ~ 12166898 (-)
G93148 NA non-coding downstream 312768 12041695 ~ 12041929 (-)
G93144 NA non-coding downstream 317879 12036612 ~ 12036818 (-)
LOC122357025 LOC107585516,LOC108412594,LOC105899417 non-coding downstream 325075 11983711 ~ 12029622 (-)
LOC122356854 NA non-coding upstream 28680 12401671 ~ 12406933 (-)
G93392 jag2a,LOC107654986,LOC107705348,LOC107724379,LOC107675567,LOC107600569,LOC107585503 non-coding upstream 158990 12531981 ~ 12533886 (-)
G93394 NA non-coding upstream 160995 12533986 ~ 12535068 (-)
G93460 NA non-coding upstream 732088 13105079 ~ 13105684 (-)
G93470 NA non-coding upstream 783939 13156930 ~ 13158437 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 61103 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 555665 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 706662 11643930 ~ 11648035 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other downstream 822240 11525403 ~ 11532457 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other downstream 1135712 11200552 ~ 11218985 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other upstream 56206 12429197 ~ 12430778 (-)
LOC122356414 NA other upstream 184086 12557077 ~ 12597302 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other upstream 936961 13309952 ~ 13325051 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 1147422 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 1191431 13564422 ~ 13568025 (-)

Expression


Co-expression Network