rassf4a (LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153)


Basic Information

Item Value
gene id rassf4a
gene name LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11200552 ~ 11218985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254567.1
AAGTGTCGTTGATATAacaatttcctttttaaaacaagtctGTCTTCCCACGGGGGAAGTGTCTTGGCAGCTCAAAGCATCTACTTCCTCAAATATTTTATCCGAACTTTCGGTGTCATATTTTCCTAGATGATATTCTCAGACTGAGCTAAAAACAGGAAGCTCGTGTGCCCCAGCTCTCAGACTGAAAGAAACTATCTAGCGCTGCATGTTTAACTGCGTGCTTAAGTGGTAATCCTTAcacgttttattttaactgaagCTTTAAATTATTAAGATCCTACGGCTAAATGAAGTTGTAATATGACAGGTGGACCGAATGCGATTTAACGGCAACCTTTCATTTGCATCTTAATTGTCTCGCGGTTATCGCAAGACTAGTGATAATTATCTCACAGACATGCTAATAACGGTGTGAACTGTCCCGGCGTTTCCCAGGGCAACCGCAGAAGACTCCCCCCACGGacgcctctgattggctccTGTACTCAGCGGCGTGTCGGATTGGTTTACACAGCTGTCAGTCTTCCGAGCGAGCAGCATTATTTTGACCGTCTATTCCCCGAGGAAGCAGCAGGGTGAAGTGGAAGAGTGGAGTGGAAGATAAGACGCTGTGTCTTACAAAACAGCTGGGCTGCGTCGGCTCTTACAAAGGAAAGGCGTTTCATGAGATGGTGAGCTGTATGTACAGCTGTCTTCTTTTGAAGGCTATCTAGGCTTCTTCTGAAACTGTTCTCAGCTCAAAGTCTTTCCATTAAAGAATCTCAATATGGATCCTGCCAAGACCTCCTATGTGAGGCTGAATGAGGAGAAAGTAATTACAAAgtcTGATATTTTGACCCTTCTGAAAACGTACAACTGTTATCACGAGGGAAAAAGCTTCCAGCTTCGGATTCGTGAGGAAGAGGGCGAGCTGATCGTGGAGGGTTTACTCAACATCTCCTGGGGCCTGAAAAGGCCAATCAGACTGCAGATGCACGATGACAACGAGCGTTTTCGCTACGCCTGCTCGAGTGCGTGGAGGTCGGAGAGCTCAGAGTCCAGCAGgaatgaAAATGCTGAACACCAGTTTTGCAAAGaacccaacaacaacaacaaaatcagcGCCTCACCTATACCCAGTGAGGATGGAGCCGAGGAAGACATCCCTCAGCTGCTGAGAACGAGAAGTGACGCAAGCTTTGTGAATATCCAAAGAAGATCCAAAATCCACAGCACTGCCGATTCACAGAGGATAAAGAGACACCGCTTCTCCATCAACGGCCATTTTTACAACCACAAAaCATCAGTTTTTACTCCATCTTACGGATCAGTGACTAATGTACGAGTGAACAGCACTTTGACAACACAGCAAGTTCTTAACTTGCTCCTGAATAAGTTTCGGGTTGAGAATAAGGCAGATGAGTTTGGCCTCTATCTTGTCCATGAATCAGGGGAGAGAGCGAAACTTAAGGACACTGAATATCCTTTGGTATCTCGTCTGTTGCATGGTCCATGTGAAAAAATCGCcagaatatttattatggaaaAGGATCTTGGTGAAGAGATTACGTATGATGTTGCACAGTATATTAAGTTTGAAATGCCTGTTTTGGACAGTTTTATCAAGAAATtgaaagaggaggaagagcgAGAGATTTTAAAACTAACAAGAAAATACAGTTCGCTGAGATCGATGATATTGCAAAAATTGGATGGTATCTGACACTGCAAATTATGTGAGCGAAAATGCCAACCGTTTAGATTAATGGCACCTTCTCTGTTGTACAGCCAGCATTAGTGATCCATAGATTGCTAGTTttaggtttttcatttttggggaaGACATGAGTGCAATAACTAGTGTACAAAAAATATAGGCTACTGGTAACTAGTAATAAGCAGCTGTAAATACTTTTACCCACAATTCTCAGGTGTTACAAATTAGCTAGAATGTTATTTTAAGACGCACTTATGCTCTGTGACTTAAAAGGCAAAAAACTGTGGTGTTGTtgtagttatgtttttttttacttagaacATATACACACCCCTTACATGTTTCTACAGTAACAATATTaccttttatacattttgaaataaaactaatatataaagGGA
>XR_006252282.1
AATTCATAAAAAGTTCCCTTATTTGGGAAGTGTCGTTGATATAacaatttcctttttaaaacaagtctGTCTTCCCACGGGGGAAGTGTCTTGGCAGCTCAAAGCATCTACTTCCTCAAATATTTTATCCGAACTTTCGGTGTCATATTTTCCTAGATGATATTCTCAGACTGAGCTAAAAACAGGAAGCTCGTGTGCCCCAGCTCTCAGACTGAAAGAAACTATCTAGCGCTGCATGTTTAACTGCGTGCTTAAGTGGGCAACCGCAGAAGACTCCCCCCACGGacgcctctgattggctccTGTACTCAGCGGCGTGTCGGATTGGTTTACACAGCTGTCAGTCTTCCGAGCGAGCAGCATTATTTTGACCGTCTATTCCCCGAGGAAGCAGCAGGGTGAAGTGGAAGAGTGGAGTGGAAGATAAGACGCTGTGTCTTACAAAACAGCTGGGCTGCGTCGGCTCTTACAAAGGAAAGGCGTTTCATGAGATGGTGAGCTGTATGTACAGCTGTCTTCTTTTGAAGGCTATCTAGGCTTCTTCTGAAACTGTTCTCAGCTCAAAGTCTTTCCATTAAAGAATCTCAATATGGATCCTGCCAAGACCTCCTATGTGAGGCTGAATGAGGAGAAAGTAATTACAAAgtcTGATATTTTGACCCTTCTGAAAACGTACAACTGTTATCACGAGGGAAAAAGCTTCCAGCTTCGGATTCGTGAGGAAGAGGGCGAGCTGATCGTGGAGGGTTTACTCAACATCTCCTGGGGCCTGAAAAGGCCAATCAGACTGCAGATGCACGATGACAACGAGCGTTTTCGCTACGCCTGCTCGAGTGCGTGGAGGTCGGAGAGCTCAGAGTCCAGCAGgaatgaAAATGCTGAACACCAGTTTTGCAAAGaacccaacaacaacaacaaaatcagcGCCTCACCTATACCCAGTGAGGATGGAGCCGAGGAAGACATCCCTCAGCTGCTGAGAACGAGAAGTGACGCAAGCTTTGTGAATATCCAAAGAAGATCCAAAATCCACAGCACTGCCGATTCACAGAGGATAAAGAGACACCGCTTCTCCATCAACGGCCATTTTTACAACCACAAAaCATCAGTTTTTACTCCATCTTACGGATCAGTGACTAATGTACGAGTGAACAGCACTTTGACAACACAGCAAGTTCTTAACTTGCTCCTGAATAAGTTTCGGGTTGAGAATAAGGCAGATGAGTTTGGCCTCTATCTTGTCCATGAATCAGGGGAGAGAGCGAAACTTAAGGACACTGAATATCCTTTGGTATCTCGTCTGTTGCATGGTCCATGTGAAAAAATCGCcagaatatttattatggaaaAGGATCTTGGTGAAGAGATTACGTATGATGTGagtattttgtacatttcaaagTTCACGGTAGGTCATTCAGAACGTGCTTCCCTCGGCAAACCAACATTCTGTTGTTCAAATATAGACACAGTAAACAATAATGTCACTTCCAGATGCTACACATCAAGTTTAATTTTAGGATGCTATCCTGGGGACTAACAATAGTACAAATATTTGTACTGCAGACTCAACATTCACTGTGATATGAAAATGTTGAAGCATATGTGCAGGATCTCtgtgatatttttgttcatAGTCAGAATACTCTGTGCTTATATCTCCGTGTTTAACGCAATGATGCATTTTCTTACAGGTTGCACAGTATATTAAGTTTGAAATGCCTGTTTTGGACAGTTTTATCAAGAAATtgaaagaggaggaagagcgAGAGATTTTAAAACTAACAAGAAAATACAGTTCGCTGAGATCGATGATATTGCAAAAATTGGATGGTATCTGAC

Function

NR:

description
ras association domain-containing protein 4

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K09851 RASSF2_4; Ras association domain-containing protein 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254567.1 True 2100 mRNA 0.42 12 11200552 11218958
XR_006252282.1 False 1842 transcript 0.43 12 11200946 11218985

Neighbor

gene id symbol gene type direction distance location
LOC122356100 si:dkey-275b16.2,LOC107588698,LOC107708014,LOC107757157,LOC107564350,LOC107668834 coding downstream 1472 11194486 ~ 11199080 (-)
LOC122356818 NA coding downstream 5121 11192305 ~ 11195431 (-)
wu:fj13e08 LOC107707292,LOC107668826,LOC107588624 coding downstream 8428 11186438 ~ 11192124 (-)
zcchc24 zcchc24,LOC107564348,LOC106577169 coding downstream 14566 11153591 ~ 11185986 (-)
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding downstream 236154 10959441 ~ 10964398 (-)
tmem72 tmem72,LOC107707262,LOC107757114,LOC107564361,LOC107673868,LOC107668804,LOC107588619 coding upstream 618 11219603 ~ 11223816 (-)
LOC122356689 LOC107668812,LOC107588612,LOC107707231,LOC107757103,LOC107548607 coding upstream 93182 11312167 ~ 11324704 (-)
wdfy4 wdfy4,LOC107707224,LOC107668800,LOC107757102,LOC107673934 coding upstream 122269 11341254 ~ 11382311 (-)
mapk8a mapk8a,LOC108443371,LOC107707207,LOC107588610,LOC107673914,LOC102796928 coding upstream 195238 11414223 ~ 11425178 (-)
prdm8 prdm8,LOC107708270,LOC107668783,LOC107588729,LOC107673884,LOC107548615,LOC107757101 coding upstream 263534 11482519 ~ 11486234 (-)
G92848 NA non-coding downstream 51300 11146178 ~ 11149252 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding downstream 206754 10989282 ~ 10993798 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding downstream 211857 10988414 ~ 10988695 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding downstream 214032 10986302 ~ 10986520 (-)
G92836 LOC107668836 non-coding downstream 223093 10976533 ~ 10977459 (-)
G92842 NA non-coding upstream 38095 11257080 ~ 11262637 (-)
G92934 arhgap22,LOC107588697,LOC107668831,LOC107708000,LOC107673870,LOC107548604 non-coding upstream 191645 11410630 ~ 11411439 (-)
G92935 NA non-coding upstream 193198 11412183 ~ 11413253 (-)
G93062 NA non-coding upstream 405813 11624798 ~ 11625140 (-)
G93063 NA non-coding upstream 410455 11629440 ~ 11629749 (-)
G92819 NA other downstream 265221 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 565986 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 1008786 10174413 ~ 10191766 (-)
G92267 NA other downstream 2085001 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 3152651 8043565 ~ 8047901 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 306418 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 424945 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 552443 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 1059469 12278454 ~ 12293594 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other upstream 1210212 12429197 ~ 12430778 (-)

Expression


Co-expression Network