LOC122356841 (fancl,LOC107585345,LOC107718841)


Basic Information

Item Value
gene id LOC122356841
gene name fancl,LOC107585345,LOC107718841
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10174413 ~ 10191766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136940
AGTCTTTTCGCGGGAAGTTACTTTCGCTTCGCCTGCGTGACAACAGTGGGCAAGGCTTCTAAAAGCAGCGTTTGGTAGTTTTCTGCCTGTAAAACTTTAGTTTGTGTTTACGCGGTTTATTTTATTGCCACGACATCTAAATAGGCGTTTAGCTAGCGGTTTATTTTCAGCCCGTGCTTTGGCATACTTGTTTTTCATCATGAACTGTTTGCCGATGAGAGAAAATCCTATGATCATTCCGCTTAACAAGCAGAAGACGGTCTATGACGGGTTCATCACGGCACTGGAAAAAGACTTTAGGATAAGAATATCTCTGCCGCCTGATCGACGGATGAAACGGGCAAAACTTCATTGTTGCTGGCAAATGAAACGGCTACTTCATGGTTATCAACATATTGTGAAGCAGAGGTTACAGCATTCAACTAATTTGACGGCTTTTATCCTGGAACTCAGGACAGTATTGGAAGTGGCGTTGAAGAGCCGACCGGGATGCCAGTCCTTCTCACCACCTCAGTATTATTCCCAGCTGATAACAGAAATGGAGAACTTAGGATGGgataaGCTGCTCTTCATTGATGCAGAGTTCCACACACTCAAGCTGAAGGCAGAGGACTCTGCAGGTCGTCAACACGCCATTACAGTCAAGCTCAAGTCCAAGGTCAAACCATGGGTCAAGccctgttttatttctttttttctttctcagcttAATGTTTTATCTTATGGTCAGTTtgtccatgttttttttgttttttt
>XM_043255912.1
TTAATGAAGGGGGAATTAGACACCAAAAACAGCCACTGACAGACATCTGCATCCACGGCACCCCAGCAGGAAatgatacgttttttttttttcgctgtttatattttaaccTAAGTGTTCGTGCAAGTCAGTTGGGAGAAAGACACGATGGAAACCTGTCAGAGAACAATGGACATGCTGATATTCGTGAGATTCACGTTATGTAGTCCAGTAATTGTTTCTCAGGATCAGTTTCCATATAAACACACTGTAACCTCGGCTACAAAAACATGTAGAAGTAATTAAGCTTGCCACcgttttcacatttcacatggTATACCGAAACAGCTCCTTTAAGGAGCCTTAGCAAACTTCCAACGGGACAGCACGGATGaccattttattatgtttttattaacttcCGTTATTAAGTCTAGTTTTTATTCAATTCTAAAACGCTaagaaataatgataaataacatccattcattaaaaaaagacgtAAACCGAAATTATGTTCGACACTAAAAATTGCTTCGTATTAAAtaacttcatttaatttattgatttcacgtacaatatatttttcatcaaataaatacgCGAGCGGCTTATTCACgaagtctttaaaaaaacatccaatCGAGTCAAAACGTGCTCTTCTATAGTAAATACAAAAGCAGCGATACTTAAgaagaaaacatacaaaactatTCATGAAACAGCGAAAATGTCAATAATTACTACAACCGTGTATGGTTTGATGAAAAcgtgtgacaacatgcccctaCCTGAAAATATCAGACCGTTCAACCTTCATACGTTAATCGGTGATATCTAATATGCAAGTCTGGGTTTATTTGCGCTCACTTGTTCACCCAGTAGACTGCaccaacaaaaactaaataaataaaaacgacgAAGCTGGAACTTTAGTTTGGAGAACAGCAGACATAATATTTTACTGCTAGCAAAATGCTTCTAGAATAAGTGCGTCACGTGGGGCGTTTAGACCTTACCTGTGTGatacttttgttgttttgattttggttAAAGGCGccttctttaaaagaaaagcgCATAAACATTCATAAAGTGGTTAACTAACACTAACCTTCATCTGTCGCTCAACggcacatttattttactagATGTTAAGGGATTCTGTGCTTGTACGTTGCTAATGCACCGCCGAGAgaattttggttttaaatttgTTGCAAATAAGTTCAAATAAAGTTCGGCCATTCAAACTTTAATGACGTCAGCGACACTTGAGTCTTTTCGCGGGAAGTTACTTTCGCTTCGCCTGCGTGACAACAGTGGGCAAGGCTTCTAAAAGCAGCGTTTGGTAGTTTTCTGCCTGTAAAACTTTAGTTTGTGTTTACGCGGTTTATTTTATTGCCACGACATCTAAATAGGCGTTTAGCTAGCGGTTTATTTTCAGCCCGTGCTTTGGCATACTTGTTTTTCATCATGAACTGTTTGCCGATGAGAGAAAATCCTATGATCATTCCGCTTAACAAGCAGAAGACGGTCTATGACGGGTTCATCACGGCACTGGAAAAAGACTTTAGGATAAGAATATCTCTGCCGCCTGATCGACGGATGAAACGGGCAAAACTTCATTGTTGCTGGCAAATGAAACGGCTACTTCATGGTTATCAACATATTGTGAAGCAGAGGTTACAGCATTCAACTAATTTGACGGCTTTTATCCTGGAACTCAGGACAGTATTGGAAGTGGCGTTGAAGAGCCGACCGGGATGCCAGTCCTTCTCACCACCTCAGTATTATTCCCAGCTGATAACAGAAATGGAGAACTTAGGATGGgataaGCTGCTCTTCATTGATGCAGAGTTCCACACACTCAAGCTGAAGGCAGAGGACTCTGCAGGTCGTCAACACGCCATTACAGTCAAGCTCAAGTCCAAGTATCCAGACGAGGCCCCAGAGTTTTCTGCAGATCTTCCTGTTCCATTGGTCATCACGTGGACCTCTCAGAGCACCTTAGCCAATGTCCACAGTCAGTTCCTGTTAAATGTGGAGGCTCTCTCCGAGTTCTGGTCGGTGCTGGGCGAGATCGATGAGCAGACATGGGTACTGGAACCAGAAAAACCCACAAAAGCAGACTCCATGAGAAGAATGGCCATTGGAAACAATGTCTCAATAAAGGTACAAATTGACCCCAGACACCCCAAAATGCTGCCGGAGTGCTGTTTGCTCGGGGCTGAGCACGTTGTCACTCCTTTAAGGAATAAGTTGAATGCTAATATGCATTTATGGAACCCTGACTGCAGTGTCCTACAGAATATGAAGGATGTGTTGGAGATAGAATTTCCATCGCCTACCACCCACGAAAAATCTAGTTTCAGTGTTGAATGTGGCATCTGTTACTCTTATCGACTTGAGTCAGCCATTCCAGATCAGGTCTGCAATGACCCACGCTGCCAGCCTTTCCATCAGGCGTGTCTTTATGAGTGGTTGAGAGGTCTGCCCACCAGCCGCCAAAGCTTTAATATCGTGTTTGGAGAATGTCCTTACTGCAGCAAGCCCATCACTGTGAAAATGGTCACAGGAAACACTTAAAAACAGTTTGTTGATTCAGAACAGTGTTCATGTGGTGTTACGGCTCCAATGAGGGTAATACCAACAACCAACAACACTCAGTGTCATCACAACAAGGATG

Function

symbol description
fancl Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within oocyte development. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleus. Is expressed in central nervous system; eye; heart; intermediate cell mass of mesoderm; and reproductive system. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group L. Orthologous to human FANCL (FA complementation group L).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase FANCL-like isoform X1

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

RNA

RNA id representative length rna type GC content exon number start site end site
TU136940 False 756 TUCP 0.43 6 10185761 10190510
XM_043255912.1 True 2668 mRNA 0.41 15 10174413 10191766

Neighbor

gene id symbol gene type direction distance location
LOC122356762 vrk2,LOC107718826,LOC107693217,LOC107560458,LOC107585344 coding downstream 95245 10066925 ~ 10079168 (-)
papolg papolg,LOC107601893,LOC107726947,LOC107666450,LOC107559338,LOC107743495 coding downstream 567910 9596826 ~ 9606503 (-)
rel LOC107726948,LOC107666554,LOC107601890,LOC107655447,LOC107559337,LOC107743496 coding downstream 580173 9584404 ~ 9594240 (-)
pdlim1 pdlim1,LOC107666525,LOC107726967,LOC107601889,LOC107655446,LOC107743498,LOC107559336 coding downstream 599838 9569098 ~ 9574575 (-)
sgpl1 sgpl1,LOC107726953,LOC107601887,LOC107655444,LOC107559334,LOC107666355 coding downstream 610340 9553287 ~ 9564073 (-)
LOC122356208 pcgf6,LOC107588739,LOC107707701,LOC107656932,LOC107585366,LOC107673880 coding upstream 107391 10299157 ~ 10305442 (-)
LOC122356628 LOC107707586,LOC107588654,LOC107688299,LOC107716331,LOC107673895,LOC107585321 coding upstream 153691 10345457 ~ 10349224 (-)
chata chata,LOC107588646,LOC107683741,LOC107707518,LOC107716339,LOC107673961,LOC107585314 coding upstream 443199 10634965 ~ 10641860 (-)
slc18a3a slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 coding upstream 450793 10642559 ~ 10645119 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding upstream 460064 10651830 ~ 10658909 (-)
LOC122356802 NA non-coding downstream 124030 9699013 ~ 10050383 (-)
G92427 NA non-coding downstream 473549 9700633 ~ 9700864 (-)
G92407 NA non-coding downstream 533212 9640469 ~ 9641201 (-)
G92391 NA non-coding downstream 579133 9595026 ~ 9595280 (-)
G92367 LOC107666417,LOC107726946,LOC107655437,LOC107743505,LOC107601798 non-coding downstream 720106 9451223 ~ 9454307 (-)
G92548 NA non-coding upstream 48500 10240266 ~ 10243061 (-)
G92550 NA non-coding upstream 57154 10248920 ~ 10249725 (-)
G92551 nt5c2a,nt5c2,LOC107716328,LOC107673949 non-coding upstream 79649 10271415 ~ 10273503 (-)
LOC122357134 NA non-coding upstream 83779 10275545 ~ 10293934 (-)
G92575 NA non-coding upstream 123930 10315696 ~ 10415232 (-)
G92267 NA other downstream 1058862 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2126512 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 2358034 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 3674840 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 3777987 6358201 ~ 6396426 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 440484 10632250 ~ 10634566 (-)
G92819 NA other upstream 733178 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 1008786 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 1333637 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 1452164 11643930 ~ 11648035 (-)

Expression


Co-expression Network