LOC122356399 (LOC107675571,LOC107654995,LOC107585506,LOC107724409,LOC107600571)


Basic Information

Item Value
gene id LOC122356399
gene name LOC107675571,LOC107654995,LOC107585506,LOC107724409,LOC107600571
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12610172 ~ 12612682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255072.1
CCATTATTGTGCAATTTTAATTATTCCAGCAAAAACCTAATAGCATTTGGGTTAGATATTAAAATGGCCAAGGACCTAAAAATCCTGACAggattatacattaaaaaaataaacctgcaGAGGGCGACAGTCACCGACTTGAATCAAATGATAAAAcgacaaaaaaatgaataaatacatgggATAGATTTCCTGGTTGTTAACAAATATCTCATATGTCACGTTCAGTTAAccaaagatttatttataatgtgaaataaatgcgAAATCAAAATGCGAGAGAAgggcttttatttgatttcttgttttatttgatttccgGTTCCTGTGTTTCCCATGATGCCGTGCCCGTTGGGCAAATTCAAACAGTAGAAATGGAAGAGGAATCGAGGAGAGGAGAGTTTGACTGTGCAAACATGACTGTCATCAAACATAGCAACACCAACGAAACTTCTGACAACAGCTACAACAACCCGGTTATTCACACCGACCAGTCTCCAGCTCAGGAAGAACAATCAAAGGTTTCATCTGACGGAAAAGGGGAATGGAACATTCTGTGCCATGTCAGTGATCCTGAATCATCCACTAAATCTAAGGTGGAAAATTCGTGTTTGTTGGATAACGGTGAGATCGAGAGAGACCTGGAGCCTTTAACCCCATCagaagacaaagaaaataaaaatatcgtCATGCATGCAAGAACAGAACTTCGAGGTGACGGTCATGATGTAGGTTGCCAGCAGTTTGATCCTTTGGCCAATTCTTCTGGCAGTCAGAGAGATTGTGAATCTAGTGGATTGACTGCAAACCATGTTGATGATGAGGAAATATTCAGGAGAGCAAGAGAAGGACGAGTGAATGTTGTCTTTCCTGGCCGTATCACCCAGGATGGCTGCTGCAGATTTGTTTGTGAGCTTCTGAAGTGTGTACTTTACCAGAGGCAGCAGATGCCTATGACCTATGACCAAATGGTGTTCCTCCAGAAACAGCAGCATAACGGTCCTCAGACAGATGATATGGTAAACCGACGGTCTTCAAAGACCTCTGAGGGCTTGGACCGGCGTCGGTGTCAGCGGACATTACAGGAACTAGATGAAGTGCTGGCCCACATTGAGGCATTGTTCTCTCTTAGCCAAGTTCCTCGTGTGCTTTTCTTTCTGGGTGGGTCTACCATCCTTCCCACAGAGCTGTATGAGGTAAACATGGAAGCAGTGGCCGTGGGGGCCGGAGAAAACAGCTTGAGGACCTCTACCTGTCTAAGACAGCTTTTCCGCGCATTGTTTGTGGCTGACCTGTTGTCGGATGCCAAGTCTGTGCGGCTCATGACAACGACGGTCATGGCTCTGGCTCACCGGGATTGTGGCGTGACTGGGTTTAGGCCCAAAGTGGATTTCAAAGTTCCCACAAAAGTGAAAAGGCAAGTCATCTCTATAGCCAGCGATTTGTCGCTCACCGGGGCGTTACACAAAACTAAAAGAGATCTGGAGGAATATATATGGTTTCAAGCCCCTGTCACTGTGAAAGGTTTCTGTAAATGACAAGGGAATAAAGAATAACAGATTTCAGGGAATGCTGAAGTACAGTTCACTCCATTTTCAGGGATCACAGCTGTATTACTGGCCAAAAAGTATATgggctattgttttttttaattattgttattattcaggAATTCTGTGtgaattgtacttttttaaaaagaaaaaaacaacaacctcaGATTATTTATGCCATTTACGTTTGACATCTGCTAAACCatctattttacattattaatttttacagtatacagtggtgcttttttttttaaatgtataatctTGGCTGCTACTCACTCCTAAGACTATTTGTACCGATTTGTaattactgttaattaaaaCCAACTTCTATATGACAGCTACTGGACACTGATGCATGcacatgattttaatttttatcttt

Function

NR:

description
PREDICTED: MAD2L1-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255072.1 True 1941 mRNA 0.41 3 12610172 12612682

Neighbor

gene id symbol gene type direction distance location
si:dkey-76k16.5 LOC107675535,LOC107724429,LOC107585509,LOC107600570 coding downstream 16042 12591953 ~ 12594130 (-)
si:dkey-76k16.6 LOC107654998,LOC107585507,LOC107724435,LOC107675547,LOC107577850,LOC107600570 coding downstream 18819 12588944 ~ 12591353 (-)
snx5 snx5,LOC107654994,LOC107705401,LOC107724504 coding downstream 23707 12580148 ~ 12586465 (-)
rrbp1a rrbp1,LOC107705351,LOC107654983,LOC107585504,LOC107675545 coding downstream 34988 12560158 ~ 12575184 (-)
btbd6a btbd6a,LOC107724364,LOC107588564,LOC107705400,LOC107655006,LOC107585501 coding downstream 148193 12457871 ~ 12461979 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562,LOC107585510,LOC107724457,LOC107662813 coding upstream 78712 12691394 ~ 12702158 (-)
kif16bb kif16bb,LOC107654912,LOC107600573 coding upstream 485009 13097691 ~ 13129712 (-)
ism1 ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810 coding upstream 553757 13166439 ~ 13179453 (-)
sptlc3 sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357 coding upstream 568655 13181337 ~ 13204232 (-)
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding upstream 663017 13275699 ~ 13284622 (-)
G93394 NA non-coding downstream 75104 12533986 ~ 12535068 (-)
G93392 jag2a,LOC107654986,LOC107705348,LOC107724379,LOC107675567,LOC107600569,LOC107585503 non-coding downstream 76286 12531981 ~ 12533886 (-)
LOC122356854 NA non-coding downstream 203239 12401671 ~ 12406933 (-)
LOC122357111 NA non-coding downstream 363232 12121940 ~ 12246940 (-)
G93315 NA non-coding downstream 443274 12114926 ~ 12166898 (-)
G93460 NA non-coding upstream 492397 13105079 ~ 13105684 (-)
G93470 NA non-coding upstream 544248 13156930 ~ 13158437 (-)
G93471 NA non-coding upstream 549463 13162145 ~ 13162370 (-)
G93472 NA non-coding upstream 549807 13162489 ~ 13162727 (-)
LOC122356418 NA non-coding upstream 595728 13208410 ~ 13224536 (-)
LOC122356414 NA other downstream 12870 12557077 ~ 12597302 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 179394 12429197 ~ 12430778 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 316578 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 811140 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 962137 11643930 ~ 11648035 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other upstream 697270 13309952 ~ 13325051 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 907731 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 951740 13564422 ~ 13568025 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 1080344 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 1285576 13898258 ~ 13904702 (-)

Expression


Co-expression Network