RNA id: XM_043255072.1


Basic Information

Item Value
RNA id XM_043255072.1
length 1941
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122356399
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12610172 ~ 12612682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATTATTGTGCAATTTTAATTATTCCAGCAAAAACCTAATAGCATTTGGGTTAGATATTAAAATGGCCAAGGACCTAAAAATCCTGACAggattatacattaaaaaaataaacctgcaGAGGGCGACAGTCACCGACTTGAATCAAATGATAAAAcgacaaaaaaatgaataaatacatgggATAGATTTCCTGGTTGTTAACAAATATCTCATATGTCACGTTCAGTTAAccaaagatttatttataatgtgaaataaatgcgAAATCAAAATGCGAGAGAAgggcttttatttgatttcttgttttatttgatttccgGTTCCTGTGTTTCCCATGATGCCGTGCCCGTTGGGCAAATTCAAACAGTAGAAATGGAAGAGGAATCGAGGAGAGGAGAGTTTGACTGTGCAAACATGACTGTCATCAAACATAGCAACACCAACGAAACTTCTGACAACAGCTACAACAACCCGGTTATTCACACCGACCAGTCTCCAGCTCAGGAAGAACAATCAAAGGTTTCATCTGACGGAAAAGGGGAATGGAACATTCTGTGCCATGTCAGTGATCCTGAATCATCCACTAAATCTAAGGTGGAAAATTCGTGTTTGTTGGATAACGGTGAGATCGAGAGAGACCTGGAGCCTTTAACCCCATCagaagacaaagaaaataaaaatatcgtCATGCATGCAAGAACAGAACTTCGAGGTGACGGTCATGATGTAGGTTGCCAGCAGTTTGATCCTTTGGCCAATTCTTCTGGCAGTCAGAGAGATTGTGAATCTAGTGGATTGACTGCAAACCATGTTGATGATGAGGAAATATTCAGGAGAGCAAGAGAAGGACGAGTGAATGTTGTCTTTCCTGGCCGTATCACCCAGGATGGCTGCTGCAGATTTGTTTGTGAGCTTCTGAAGTGTGTACTTTACCAGAGGCAGCAGATGCCTATGACCTATGACCAAATGGTGTTCCTCCAGAAACAGCAGCATAACGGTCCTCAGACAGATGATATGGTAAACCGACGGTCTTCAAAGACCTCTGAGGGCTTGGACCGGCGTCGGTGTCAGCGGACATTACAGGAACTAGATGAAGTGCTGGCCCACATTGAGGCATTGTTCTCTCTTAGCCAAGTTCCTCGTGTGCTTTTCTTTCTGGGTGGGTCTACCATCCTTCCCACAGAGCTGTATGAGGTAAACATGGAAGCAGTGGCCGTGGGGGCCGGAGAAAACAGCTTGAGGACCTCTACCTGTCTAAGACAGCTTTTCCGCGCATTGTTTGTGGCTGACCTGTTGTCGGATGCCAAGTCTGTGCGGCTCATGACAACGACGGTCATGGCTCTGGCTCACCGGGATTGTGGCGTGACTGGGTTTAGGCCCAAAGTGGATTTCAAAGTTCCCACAAAAGTGAAAAGGCAAGTCATCTCTATAGCCAGCGATTTGTCGCTCACCGGGGCGTTACACAAAACTAAAAGAGATCTGGAGGAATATATATGGTTTCAAGCCCCTGTCACTGTGAAAGGTTTCTGTAAATGACAAGGGAATAAAGAATAACAGATTTCAGGGAATGCTGAAGTACAGTTCACTCCATTTTCAGGGATCACAGCTGTATTACTGGCCAAAAAGTATATgggctattgttttttttaattattgttattattcaggAATTCTGTGtgaattgtacttttttaaaaagaaaaaaacaacaacctcaGATTATTTATGCCATTTACGTTTGACATCTGCTAAACCatctattttacattattaatttttacagtatacagtggtgcttttttttttaaatgtataatctTGGCTGCTACTCACTCCTAAGACTATTTGTACCGATTTGTaattactgttaattaaaaCCAACTTCTATATGACAGCTACTGGACACTGATGCATGcacatgattttaatttttatcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138213 lncRNA downstream 75104 12533986 ~ 12535068 (-) True G93394
TU138211 lncRNA downstream 76286 12531981 ~ 12533886 (-) True G93392
TU138169 lncRNA downstream 179486 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA downstream 179486 12429222 ~ 12430686 (-) True tmem234
TU138139 lncRNA downstream 203239 12401678 ~ 12406933 (-) True LOC122356854
TU138291 lncRNA upstream 492397 13105079 ~ 13105684 (-) True G93460
TU138302 lncRNA upstream 544248 13156930 ~ 13158437 (-) True G93470
TU138314 lncRNA upstream 549463 13162145 ~ 13162370 (-) True G93471
TU138315 lncRNA upstream 549807 13162489 ~ 13162727 (-) True G93472
TU138359 lncRNA upstream 595728 13208410 ~ 13224516 (-) False LOC122356418
XM_043255092.1 mRNA downstream 12882 12595926 ~ 12597290 (-) False LOC122356414
XM_043255087.1 mRNA downstream 16042 12591953 ~ 12594130 (-) True si:dkey-76k16.5
XM_043255088.1 mRNA downstream 18819 12588944 ~ 12591353 (-) True si:dkey-76k16.6
XM_043255073.1 mRNA downstream 23707 12580148 ~ 12586465 (-) True snx5
XM_043255042.1 mRNA downstream 34988 12560158 ~ 12575184 (-) False rrbp1a
XM_043255051.1 mRNA upstream 78712 12691394 ~ 12702158 (-) True flrt3
XM_043255044.1 mRNA upstream 485009 13097691 ~ 13129712 (-) False kif16bb
XM_043255043.1 mRNA upstream 485009 13097691 ~ 13129712 (-) True kif16bb
XM_043255068.1 mRNA upstream 553757 13166439 ~ 13179453 (-) True ism1
XM_043255052.1 mRNA upstream 568655 13181337 ~ 13204232 (-) True sptlc3
TU138208 other downstream 12870 12557077 ~ 12597302 (-) True LOC122356414
XR_006252291.1 other downstream 179394 12429197 ~ 12430778 (-) False tmem234
XR_006252352.1 other downstream 811140 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 1078863 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1391187 11200946 ~ 11218985 (-) False rassf4a
TU138426 other upstream 951740 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1083390 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1297657 13910339 ~ 13911837 (-) True G93875
TU138946 other upstream 1466850 14079532 ~ 14082758 (-) True LOC122356235
TU138948 other upstream 1547641 14160323 ~ 14164348 (-) True srsf5a

Expression Profile