fancl (fancl,LOC107585345,LOC107718841)


Basic Information

Item Value
gene id fancl
gene name fancl,LOC107585345,LOC107718841
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10051087 ~ 10067172 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255819.1
GCGGGAAGTTACTTTCGCTTCGCCTGCGTGACAACAGTGGGCAAGGCTTCTAAAAGCAGCGTTTGGTAGTTTTCTGCCTGTAAAACTTTAGTTTGTGTTTACGCGGTTTATTTTATTGCCACGACATCTAAATAGGCGTTTAGCTAGCGGTTTATTTTCAGCCCGTGCTTTGGCATACTTGTTTTTCATCATGAACTGTTTGCCGATGAGAGAAAATCCTATGATCATTCCGCTTAACAAGCAGAAGACGGTCTATGACGGGTTCATCACGGCACTGGAAAAAGACTTTAGGATAAGAATATCTCTGCCGCCTGATCGACGGATGAAACGGGCAAAACTTCATTGTTGCTGGCAAATGAAACGGCTACTTCATGGTTATCAACATATTGTGAAGCAGAGGTTACAGCATTCAACTAATTTGACGGCTTTTATCCTGGAACTCAGGACAGTATTGGAAGTGGCGTTGAAGAGCCGACCGGGATGCCAGTCCTTCTCACCACCTCAGTATTATTCCCAGCTGATAACAGAAATGGAGAACTTAGGATGGgataaGCTGCTCTTCATTGATGCAGAGTTCCACACACTCAAGCTGAAGGCAGAGGACTCTGCAGGTCGTCAACACGCCATTACAGTCAAGCTCAAGTCCAAGTATCCAGACGAGGCCCCAGAGTTTTCTGCAGATCTTCCTGTTCCATTGGTCATCACGTGGACCTCTCAGAGCACCTTAGCCAATGTCCACAGTCAGTTCCTGTTAAATGTGGAGGCTCTCTCCGAGTTCTGGTCGGTGCTGGACGAGATCGATGAGCAGACATGGGTACTGGAACCAGAAAAACCCACAAAAGCAGACTCCATGAGAAGAATGGCCATTGGAAACAATGTCTCAATAAAGGTACAAATTGACCCCAGACACCCCAAAATGCTGCCGGAGTGCTGTTTGCTCGGGGCTGAGCACGTTGTCACTCCTTTAAGGAATAAGTTGAATGCTAATATGCATTTATGGAACCCTGACTGCAGTGTCCTACAGAATATGAAGGATGTGTTGGAGATAGAATTTCCATCGCCTACCACCCACGAAAAATCTAGTTTCAGTGTTGAATGTGGCATCTGTTACTCTTATCGACTTGAGTCAGCCATTCCAGATCAGGTCTGCAATGACCCACGCTGCGGCCAGCCTTTCCATCAGGCGTGTCTTTATGAGTGGTTGAGAGGTCTGCCCACCAGCCGCCAAAGCTTTAATATCGTGTTTGGAGAATGTCCTTACTGCAGCAAGCCCATCACTGTGAAAATGGTCACAGGAAACACTTAAAAACAGTTTGTTGATTCAGAACAGTGTTCATGTGGTGTTACGGCTCCAATGAGGGTAATACCAACAACCAACAACACTCAGTGTCATCACAACAAGGATG

Function

symbol description
fancl Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within oocyte development. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleus. Is expressed in central nervous system; eye; heart; intermediate cell mass of mesoderm; and reproductive system. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group L. Orthologous to human FANCL (FA complementation group L).

NR:

description
serine/threonine-protein kinase VRK1-like

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255819.1 True 1406 mRNA 0.46 14 10051087 10067172

Neighbor

gene id symbol gene type direction distance location
bcl11aa bcl11aa,bcl11a,LOC107666449,LOC107601892,LOC107655449,LOC107559339,LOC107743494 coding upstream 383249 9615027 ~ 9667838 (+)
neurog3 LOC107666354,LOC107726936,LOC107601803,LOC107655417 coding upstream 482560 9567617 ~ 9568527 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding upstream 498592 9549733 ~ 9552495 (+)
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding upstream 559681 9482211 ~ 9491406 (+)
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding upstream 577553 9457557 ~ 9473534 (+)
LOC122356189 inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding downstream 227034 10294206 ~ 10297714 (+)
ldb1a ldb1a,ldb1,LOC107707596,LOC107585322,LOC107673939,LOC108442788 coding downstream 246242 10313414 ~ 10333604 (+)
LOC122357143 NA coding downstream 261972 10329144 ~ 10329279 (+)
prom2 LOC107707565,LOC107588656,LOC107688306,LOC107585354 coding downstream 267503 10334675 ~ 10343979 (+)
nsmce4a LOC107707575,LOC107588653,LOC107688307,LOC107716332,LOC107585317 coding downstream 282616 10349788 ~ 10354314 (+)
LOC122356803 NA non-coding upstream 1645 10044781 ~ 10049442 (+)
G92434 NA non-coding upstream 320085 9730725 ~ 9731002 (+)
G92432 NA non-coding upstream 323120 9724396 ~ 9727967 (+)
G92361 NA non-coding upstream 456810 9592419 ~ 9594277 (+)
LOC122356835 NA non-coding upstream 467416 9570989 ~ 9583671 (+)
G92513 NA non-coding downstream 1316 10068488 ~ 10070783 (+)
G92524 NA non-coding downstream 97387 10164559 ~ 10165656 (+)
G92552 NA non-coding downstream 208412 10275584 ~ 10276178 (+)
G92563 NA non-coding downstream 242065 10309237 ~ 10309776 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding downstream 575384 10642556 ~ 10645237 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 616482 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 886973 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 961966 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 1023178 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 1310992 8739036 ~ 8740095 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 137941 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 349068 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 897683 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1146354 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 1188422 11255594 ~ 11262620 (+)

Expression


Co-expression Network