med6 (med6,LOC107654960,LOC107602956,LOC107683373,LOC107553190)


Basic Information

Item Value
gene id med6
gene name med6,LOC107654960,LOC107602956,LOC107683373,LOC107553190
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14006738 ~ 14009585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255944.1
GTGGCGGTAATGCACCTATGAACGTGATTGGGttggagaagaaaaagaggagcGTCGGCAGTTATTGCGTCATCAGCCTGCGACAGAGTGCGAAGATGGCGTCGGTGGATTTAAGAGATAATTTGCTGGGCATCTCGTGGGTAGACAGTGGCTGGGTGCCCATCCTGAACCCCAGCAATGTACTGGAGTATTTCTCCGAGAGGAGCAACCCCTTTTATGATCGCACCTGCAACAACGAGGTGGTCAAAATGCAGAGATTAACCCTGGATCACCTCAATCAGATGGTGGGTGTGGAATATATTTTGCTTCACGCTCAGGAGCCGATTCTGTACATCATCAGAAAACAGCAGAGACAGTCACCGACACAAGTGATCCCTCTTGCTGACTACTATATCATAGCTGGAGTGGTTTACCAAGCGCCTGACCTGGGATCAGTCATTAGTTCCAGAGTGCTCTCAGCGGTTCATGGGATTCAGTCTGCGTTTGATGAGGCGATGTCTTTCTGCAGGTACCATCCATCCAAAGGGTACTGGTGGCACTTTAAAGACCAGGAGGAAAGAGAAAGGGTAAAGCCTAAATCCAAACGGAAAGAGGAGCCGAGTTCTTTGTTCCAAAGGCAGAGAGTTGACACACTGCTACTAGACCTGCGCAATAAATTTCCCCCAACTTTCTATCAGACCAAACCAGGAGAGAAACCTTTGCCAGTGGAGGTAAAGAAAGAGCCAGAAGTGCCGGTTGAGACGGTGAAGCCTCCAGAAGAGCGAGAGACGAAACCTCCAGCCCCTCCTGGCCCTCCTCGGCCAGCTCCACAAACTACACCCAACAAACCACCTCCTGAGAAACGTGCACGTCTGCAGTGACACGCATGCCGGTCAGCCACAAACAGCTTTAATGCTGCGGGACATTTTTCTGCACCAGCTAACCAAGGGTGGACTGTTACGGTTATTGTATATAAATCCAGTTTCTTcataatttaagtttttgtaataagggaactgaaatgtgtttgtatttcatcCTAATGTCATTTTCCGTATTTCAGTGTTGCAGAGTTGTAGTATTATGCCATTCTATCACTcgctttaaaaatacactgtttTTCAAAACTTG

Function

symbol description
med6 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED6 (mediator complex subunit 6).

NR:

description
mediator of RNA polymerase II transcription subunit 6

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15128 MED6; mediator of RNA polymerase II transcription subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255944.1 True 1110 mRNA 0.47 8 14006738 14009585

Neighbor

gene id symbol gene type direction distance location
pcnx1 pcnx1,pcnx,LOC107683773 coding downstream 960 13978092 ~ 14005778 (-)
lgmn lgmn,LOC107705425,LOC107602950,LOC107654963,LOC107682791,LOC107739877,LOC107553201 coding downstream 29625 13970422 ~ 13977113 (-)
si:dkey-157l19.2 LOC107705424,LOC107654964,LOC107602919,LOC107680818,LOC107739876,LOC107553200 coding downstream 38109 13946090 ~ 13968629 (-)
zgc:153911 LOC107739899,LOC107683281,LOC107553199,LOC107705423 coding downstream 67913 13936768 ~ 13938825 (-)
LOC122356415 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 coding downstream 122566 13858830 ~ 13884172 (-)
map3k9 map3k9,LOC107705427,LOC107654958,LOC107602953,LOC107553203 coding upstream 7436 14017021 ~ 14030517 (-)
slc8a3 slc8a3,LOC107654959,LOC107705428,LOC107602954,LOC107739881 coding upstream 21771 14031356 ~ 14070144 (-)
actn1 actn1,LOC107705429,LOC107602958,LOC107654957,LOC107739883,LOC107680897,LOC103359947,LOC108440922 coding upstream 73898 14083483 ~ 14108341 (-)
dcaf5 dcaf5,LOC107705431,LOC107654956,LOC107681972,LOC107553205,LOC107739884,LOC102780996 coding upstream 103801 14113386 ~ 14127085 (-)
pacs2 pacs2,LOC107654955,LOC107681285 coding upstream 119809 14129394 ~ 14159166 (-)
G93879 NA non-coding downstream 76444 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 318112 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 340478 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 342827 13661750 ~ 13663911 (-)
G93583 NA non-coding downstream 351389 13654379 ~ 13655349 (-)
G93905 NA non-coding upstream 177954 14187539 ~ 14189904 (-)
G94003 NA non-coding upstream 862847 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 971411 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1269822 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1595102 15604687 ~ 15605713 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 94901 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 102036 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 288424 13693026 ~ 13718314 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other downstream 438713 13564422 ~ 13568025 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other downstream 447904 13520413 ~ 13558834 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other upstream 69947 14079532 ~ 14082790 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other upstream 150738 14160323 ~ 14164414 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 1015247 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 1217747 15227332 ~ 15253357 (-)
G94128 NA other upstream 1555032 15564617 ~ 15583917 (-)

Expression


Co-expression Network