G102332 (wdtc1,LOC107738793,LOC107673335)


Basic Information

Item Value
gene id G102332
gene name wdtc1,LOC107738793,LOC107673335
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26032979 ~ 26035638 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU151254
attggaGACAGATGGGGAAAATAGAGTGTGTTGAGTCTGAGATCGATCTATTTATCTCCTTTATTACTGCGTTTATAAAGCCATGCTGTTGATgagaaaacatacattttattcatataatataacGCTTTCCTCTGAAAAACCCATCCAAGATCATGACAGCAACaaactttaaatgtcatttattatttattcatttttgaaacGTTGCACTAAACTGTACTGAAATCCCAAAAGGAAATGAACACAATGGAACATAAACAGACACGTATCCCAAAAATAGACCGGATTCTGGTTTCTCTTCATCTTCTCACAGCCTCTCTCTTTATCCTCCTCAGGTTCGTCGATGAAGATGACAGGGGAGCAGTGAGGCGCTGaagaaaaaggtacaaaaataataagaaatccCCTTCGAACCTTTTCAGTCCCAGCAAACCCGACCCGAGGAACGTTCGGCGGGTCGAACAGAAACACGGTTTATTTCCAAACGAAAGCGCTGCGAGCGTGTTTCTATGAAACGGTGACACTCGTTCCCAGTCCTTGGAGATCGCCAAGTTCGTTCGGGAAAGGAAAGAAGAAAACGAAAGACCCGAGCGCCGTGCGAGCGTTGAAGTGTCCGGACGTGGACTGTGCGAGGGAGACTCACGGAGCGGAGCGTTCATTCACTCAAGAACTGAAACAGCAAAGGAAACATCTAAGGTGCTCCGCCGTCTTCTAGCTGGAGCGGCACTGGACCTGGCCGTCGGAGCTCTCGTCGTCGTCGGAGCCCTCGGGGCCCCGGCTGCTCAGGCCCGTGATGCGGTAGCCCATGTTCAGCAGCATCACCTCCAGAGGATCCGCGTTCATCCGCCTCTGGTTGGCCTGAGCCGCGCTCTCCATGTCCTCCACCACCCGGCAGTTCTCGTTCTCCGCCTGGGGTCTGGGGTTCCAGATCCGCACCACGGGGTCGATGCCGCTGGTGGCCAGGAAGCAGTAGCTGGGATGCGGCTGCAGACAGTTTACTATAGACTCGTCCCCCTGTAAGATCCGAACCAGGTTCGTCGTCTCTTTCTCCCAGATGAAGAACGAGCCGTCGTCTGAACCGCTTACGATGTACTGGCCTTTACTCCGAAGAAGTTGGCTTCTTTGATATCCGTGGTGGTGTTGCAGTGACCACAGTAGCGGTGTTTGTAGTCGAAGCTTCGCTCTCTCAGCACGATCTCGTCCTCCGGGATCGACTCCTTCCGGCTGAAGTTGTGGAATCGGATGGAGCTGCTCCCCTTCTTGTCGTCAGCTGGACGCATGAAAAACACCATTACTCACACGCACGCGCCAAACAAGCCGAGATCCGGGACCGAACCTACAGGAGTCTGCTTTGGAGAAGAGCGCCGCCTTGATGTCTTTGTCGAGCGCGTCGCACGCGCTGCTGTGAGCCTGCTCGGGGAACTTGCCCTTGAAGTCGTCCAGACACTCCAGAGCCTCGGCCACGTACTTGAGCTCGAACAGGCAGCGGGCCAAGCGGAAGTGCGCCTTCAGATGAGCCGGGTTCAGAGACAAGGCCTTCAGGCAGTCGCGCAGAGCGTCGTAGTGATCGCCGT
>TU151255
attggaGACAGATGGGGAAAATAGAGTGTGTTGAGTCTGAGATCGATCTATTTATCTCCTTTATTACTGCGTTTATAAAGCCATGCTGTTGATgagaaaacatacattttattcatataatataacGCTTTCCTCTGAAAAACCCATCCAAGATCATGACAGCAACaaactttaaatgtcatttattatttattcatttttgaaacGTTGCACTAAACTGTACTGAAATCCCAAAAGGAAATGAACACAATGGAACATAAACAGACACGTATCCCAAAAATAGACCGGATTCTGGTTTCTCTTCATCTTCTCACAGCCTCTCTCTTTATCCTCCTCAGGTTCGTCGATGAAGATGACAGGGGAGCAGTGAGGCGCTGaagaaaaaggtacaaaaataataagaaatccCCTTCGAACCTTTTCAGTCCCAGCAAACCCGACCCGAGGAACGTTCGGCGGGTCGAACAGAAACACGGTTTATTTCCAAACGAAAGCGCTGCGAGCGTGTTTCTATGAAACGGTGACACTCGTTCCCAGTCCTTGGAGATCGCCAAGTTCGTTCGGGAAAGGAAAGAAGAAAACGAAAGACCCGAGCGCCGTGCGAGCGTTGAAGTGTCCGGACGTGGACTGTGCGAGGGAGACTCACGGAGCGGAGCGTTCATTCACTCAAGAACTGAAACAGCAAAGGAAACATCTAAGGTGCTCCGCCGTCTTCTAGCTGGAGCGGCACTGGACCTGGCCGTCGGAGCTCTCGTCGTCGTCGGAGCCCTCGGGGCCCCGGCTGCTCAGGCCCGTGATGCGGTAGCCCATGTTCAGCAGCATCACCTCCAGAGGATCCGCGTTCATCCGCCTCTGGTTGGCCTGAGCCGCGCTCTCCATGTCCTCCACCACCCGGCAGTTCTCGTTCTCCGCCTGGGGTCTGGGGTTCCAGATCCGCACCACGGGGTCGATGCCGCTGGTGGCCAGGAAGCAGTAGCTGGGATGCGGCTGCAGACAGTTTACTATAGACTCGTCCCCCTGTAAGATCCGAACCAGGTTCGTCGTCTCTTTCTCCCAGATGAAGAACGAGCCGTCGTCTGAACCGCTTACGATGTACTGGCCTTTACT

Function

symbol description
wdtc1 Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human WDTC1 (WD and tetratricopeptide repeats 1).

NR:

description
PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151254 True 1577 TUCP 0.53 3 26032979 26035638
TU151255 False 1107 lncRNA 0.51 2 26032979 26034974

Neighbor

gene id symbol gene type direction distance location
nr0b2a LOC107738278,LOC107570854,LOC107673326,LOC107697581,LOC107555404,LOC107737292 coding upstream 26933 26003920 ~ 26006046 (+)
LOC122357970 pabpc1a,LOC107673332,LOC107737898,LOC108431046,LOC108256232 coding upstream 34688 25990764 ~ 25998291 (+)
LOC122357982 NA coding upstream 41961 25981040 ~ 25991018 (+)
LOC122357971 phldb3,LOC107565285,LOC107737291 coding upstream 52497 25957664 ~ 25980482 (+)
ethe1 ethe1 coding upstream 78279 25948216 ~ 25954700 (+)
LOC122357988 LOC107730291,LOC107673329,LOC107570855,LOC107697582,LOC107745168,LOC792958 coding downstream 33289 26068927 ~ 26074927 (+)
azi2 LOC107673336,LOC107745144,LOC107570847,LOC107570057,LOC107697570 coding downstream 41267 26076905 ~ 26088981 (+)
eomesb eomes,LOC107730287,LOC107673324,LOC107745170,LOC107697593,LOC107570058 coding downstream 80577 26116215 ~ 26121752 (+)
LOC122357542 ttc24 coding downstream 120001 26155639 ~ 26166583 (+)
LOC122357494 NA coding downstream 167215 26202853 ~ 26209478 (+)
G102286 NA non-coding upstream 138676 25803612 ~ 25894303 (+)
LOC122357999 NA non-coding upstream 200734 25830215 ~ 25832245 (+)
G102284 gpc2,LOC107716510,LOC107665619,LOC107573391 non-coding upstream 232788 25799205 ~ 25800191 (+)
G102212 NA non-coding upstream 275486 25757175 ~ 25757493 (+)
G102209 NA non-coding upstream 280843 25751779 ~ 25752136 (+)
G102334 wdtc1,LOC107570846,LOC107673335 non-coding downstream 2938 26038576 ~ 26040075 (+)
G102335 NA non-coding downstream 11412 26047050 ~ 26056104 (+)
G102341 NA non-coding downstream 22525 26058163 ~ 26058439 (+)
G102344 NA non-coding downstream 49742 26085380 ~ 26090260 (+)
G102348 NA non-coding downstream 58207 26093845 ~ 26126060 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other upstream 973779 25057752 ~ 25059200 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other upstream 1816216 24216243 ~ 24216763 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other upstream 1943457 24086724 ~ 24089522 (+)
nitr14b NA other upstream 2060730 23970152 ~ 23972249 (+)
neil3 neil3 other upstream 3444446 22584190 ~ 22588533 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other downstream 132920 26168558 ~ 26175734 (+)
khdc4 kiaa0907,LOC107570803,LOC107565361,LOC107679549 other downstream 338695 26374333 ~ 26383784 (+)
LOC122357543 vps13b,LOC107570792,LOC107671824 other downstream 365889 26401527 ~ 26429629 (+)

Expression


Co-expression Network