mif (mif,LOC107680670,LOC107594949,LOC107594906,LOC107668577)


Basic Information

Item Value
gene id mif
gene name mif,LOC107680670,LOC107594949,LOC107594906,LOC107668577
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 13354564 ~ 13356211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256699.1
GATGCTTTACGGTAGCCTAGAAGAAGCACTTGCATCGCGGTTACTCACCTTATTCAACCCGGGCTCACATCTGGATACATCCCTGGTCCTTCCACCTTGCACTATTTCGCAGACAGCTCTGTCTCTTCGTTGCAGTCATGCCGATGTTCGTGGTGAACACCAATGTTGCAAAGGACGCGGTTCCCGCTGAACTGCTGTCCGAGGCCACGCAGGAGCTCGCCAAAGCGATGGGCAAACCCGCGCAGTATATCGCCATACATATCATCCCGGATCAGATGATGATGTTCGGGGGCAAAGGAGATCCATGTGCACTCTGCTCTCTCACCAGCATTGGAAAGATTGGGGGCTCGCAAAATAAGCAATACTCCAAACTTCTTATGGGCCTGCTCAACAAACACCTTGGAATTTCACCTGACAGGATCTATATAAACTTTGTTGATATGGATGCAGCCAATGTGGCTTGGAACAGCACCACCTTTGGATGAAGAATATGGATTTATCGCCTGATATGAGACTGCcgtttctgtttcagaaaaaaagctCTTGGGAGCATGCTATCAGTCGATTTAGTCTTAACACACAGCACTTACTGCTTACAGCAGACAACATTTTGCTTTGACAATAAAGCTTCCTTTAAACTGTA

Function

symbol description
mif Acts upstream of or within several processes, including auditory receptor cell development; embryonic morphogenesis; and negative regulation of apoptotic process. Is expressed in several structures, including digestive system; immature eye; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in allergic disease; asthma; cystic fibrosis; lung disease (multiple); and obesity. Orthologous to human MIF (macrophage migration inhibitory factor).

NR:

description
macrophage migration inhibitory factor-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0048839 inner ear development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0008283 cell population proliferation biological_process

KEGG:

id description
K07253 MIF; phenylpyruvate tautomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256699.1 True 643 mRNA 0.47 3 13354564 13356211

Neighbor

gene id symbol gene type direction distance location
clp1 clp1,LOC107680590,LOC107750374,LOC107594950,LOC107749782,LOC107668570 coding downstream 2912 13348100 ~ 13351652 (-)
zdhhc5b zdhhc5b,zdhhc5,LOC107750372,LOC107594917,LOC107680622 coding downstream 6639 13335195 ~ 13347925 (-)
si:ch1073-44g3.1 si:ch1073-44g3.1,LOC107594879,LOC107668575,LOC107594921,LOC107680608,LOC107749736,LOC107750371 coding downstream 42909 13309642 ~ 13311655 (-)
nsd1a LOC107680604,LOC107750369,LOC107749737,LOC107668568,LOC107594938 coding downstream 46453 13290142 ~ 13308111 (-)
rmnd5b rmnd5b,LOC107594922,LOC107653309,LOC107750367,LOC107749738,LOC105026275,LOC100306854 coding downstream 65342 13281241 ~ 13289222 (-)
zgc:154054 zgc:154054,LOC107756453,LOC107680635,LOC107668581,LOC107749726,LOC107594900,LOC107594937 coding upstream 9406 13365617 ~ 13376513 (-)
LOC122357760 LOC107594915,LOC107680637,LOC107756454,LOC107749725 coding upstream 23498 13379709 ~ 13381003 (-)
mmp17b mmp17b,LOC107594914,LOC107756452,LOC107680634,LOC107668580,LOC107749724,LOC107594899,LOC107579688 coding upstream 24806 13381017 ~ 13390116 (-)
trnaa-ugc_116 NA coding upstream 35627 13391838 ~ 13391909 (-)
LOC122358133 LOC107750364,LOC107680661,LOC107749741,LOC107653312 coding upstream 194001 13550212 ~ 13562643 (-)
G99590 NA non-coding downstream 37972 13271067 ~ 13316592 (-)
G99599 NA non-coding downstream 38881 13314465 ~ 13315683 (-)
G99598 ppp2ca,LOC107750370,LOC108439805,LOC107594878,LOC105026079 non-coding downstream 40223 13313874 ~ 13314341 (-)
G99410 NA non-coding downstream 542382 12810377 ~ 12812182 (-)
G99426 NA non-coding downstream 594374 12759801 ~ 12760190 (-)
G99605 LOC107680631,LOC107756456,LOC107594913,LOC107668579,LOC107749722,LOC107594868 non-coding upstream 37190 13393401 ~ 13396160 (-)
LOC122357200 NA non-coding upstream 175089 13531300 ~ 13532865 (-)
G99611 NA non-coding upstream 217614 13573825 ~ 13586152 (-)
G99650 NA non-coding upstream 413389 13769600 ~ 13770587 (-)
G99649 NA non-coding upstream 415229 13771440 ~ 13772092 (-)
anxa6 LOC107750364,LOC107680661,LOC107749741,LOC107653312 other downstream 107637 13232863 ~ 13246927 (-)
LOC122357294 LOC107594926,LOC107750359,LOC107653319,LOC107749747,LOC107680586,LOC107594904 other downstream 150755 13155345 ~ 13203809 (-)
LOC122358015 LOC107750354,LOC107677359,LOC107594929 other downstream 545003 12804411 ~ 12809561 (-)
higd2a LOC107653333,LOC107749757,LOC107595747,LOC107594954,LOC107677392,LOC107750386 other downstream 586492 12764271 ~ 12768072 (-)
atp6v0e1 atp6v0e1,LOC106604294 other downstream 1457932 11894379 ~ 11896632 (-)
LOC122357887 selenoh,LOC107712321 other upstream 218266 13574477 ~ 13575834 (-)
LOC122357202 qdpr,qdpra,LOC107741111,LOC107550873,LOC107756464,LOC107694980,LOC107680669,LOC107601489 other upstream 835597 14191808 ~ 14193614 (-)
anxa5a anxa5a,LOC107680595,LOC107756438,LOC107741566,LOC107601470,LOC107550841,LOC108424145 other upstream 1097078 14453289 ~ 14461359 (-)
cryba1l1 cryba1l1,LOC107575843,LOC107741220,LOC107680648,LOC105891496,LOC103035187,LOC101160002,LOC103354768 other upstream 1127767 14483978 ~ 14486278 (-)
G99814 mgst2,LOC107756475,LOC107680678,LOC107676517,LOC107579102 other upstream 1151186 14507397 ~ 14510070 (-)

Expression


Co-expression Network