tspan17 (tspan17,LOC107680656,LOC107749748,LOC107653321,LOC107594893,LOC103361971)


Basic Information

Item Value
gene id tspan17
gene name tspan17,LOC107680656,LOC107749748,LOC107653321,LOC107594893,LOC103361971
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 13139567 ~ 13153684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257785.1
CGGTGTCGAGCTTCTCGGTTCTCACTGGATTGTTAGATTGCTGTGGATTGTTTTCCTCGGGACATTCACAACAAGGTTAAAATATCAAACACGTCTCATGACACCAGTCCAAAGCGTTCGGGGTTTATCAGGGGGGGCCCGGAACAATAATTTCCCCACCTATTTAACGCTTCGTGCGTTGTTTATATGTTGAAAAACTGATGAATAGATTCAGCGTTCGTTGATGGTGCATTGTTGTGGTTTGCGATGTATTGCTGGTTCGCAGCCTCTTCGGCTGAACTATAGATGCATGAATCGTTTTCGAGTCGTGTTTTTGCCGATCCGTGTAGTTTTTCGCAGCTGATCGTTGAATCAACACAACAGCGTTAGCTGGCCTGGACAAAATGAGCAGAAAACAGCATCATTTTAAAGGAGCAGAGGTCAGCTGCTGTGTTAAATACTTCTTATTCGGATTCAACATCATATTTTGGTTGCTTGGAGCTGCATTCCTGGGTATTGGACTTTGGGCCTGGGCAGAAAAGGgagtgctgtcaaacatttCCTCCATCACAGATCTGGGCGGCTTCGACCCTGTCTGGCTCTTCATTGTCGTAGGAGGGGTGATGTTCATCCTTGGATTTGCCGGATGCATCGGCGCGCTCCGGGAGAACACATTCCTGCTCAAATTTttttcagtgtttttgggCCTCATCTTTTTCCTGGAGCTCACAGCTGGCATTTTAGCCTTTGTGTTTAAAGATTGGATCAAAGACCAGCTGAACTTCTTCATCAACAACAATGTTAAAGCGTATCGGGATGATATTGACCTCCAGAACCTCATTGACTTTGCTCAAGAATATTGGTCGTGTTGTGGTGCTCACGGGCCGAATGACTGGAACCTGAACATCTATTTTAACTGCACCGACTCCAACCCCAGCCGGGAAAGGTGTGGCGTTCCCTTCTCCTGTTGCGTTAAAGACCCTGCTGAGGATGTCCTGAATACACAATGTGGCTATGATGTGCGGCTTCAAGGGGAGTTGGATCAGCAGAAGTACATTTATACGAAGGGCTGCGTGGGGCAGTTCGAAAAGTGGCTTCAGGACAATCTGATCGTTGTTGCCGGGATTTTTGTCGGGATTGCATTATTACAGATTTTTGGGATATGTCTGGCTCAGAACCTGGTGAGCGACATCAGAGCAGTCAAAGCAAACTGGTGACCCTCTGCAGAGGACAAATCAGCACTGTTTACACACCATTGAGCTGGGAAATACCGCCCTTTCACCCTATGGATGTCGTATGTTGGCTGACTTTACAAAATGGactgtccatctctctctctctctctctctctctctctctttttggtGGATCCTTATCTGAAAACAAGCTCTTATGGAGACCGTCCTGAAGGAGCTTAATGTGAGATGTCACACTGAGATCAAGCTATCTGTGATCTCGCAGCTGCCTGTTGATCGAACGCTATTTTAGTTTGCCCTTATTAAAACGTTCACCAGACTCTCCTCCGTGCTGGCGAATAATGTCAAGTGGAGGGTGTTTTCATTAACCTGTGGATGACTTTCTTTTAGAGAAACACACAAATCAACCACTGGGACTTTAAACAGAGGAGCCATGAACTAAACAAAGCCTTACAGCAGTGCGTTTCACTATACACTTATGTGGGTTCAGCTTTTTACACAGCATTCTGTCTGTCAGCCATTGGAGCCGATGGACAGTTGGACTCTCTTACCTCTGATTGGCTCTCTGTTGCACagggcagccaatcagaacgaCGTACTTGATAATTACacgtaatgcatttatttttgtgaggTCTACCACTACTGTTGGGGAGGTGGATAAATACGGTCTGTTATTTGTCTGTATAGCTATGTTTTATGCATtctctctcgtttttttttttttttttttttttttttggttgtctCTGTGAGTATAAATCGGCTTTCCCAGACTTGCTTAGGAATCTTTGTTTTCGCTGCTTTGCTTGATAGTGATATGCTATAGTGACactaataatgtattattataaatatgatgcTGCTTTAACTCATAGAAACTATACATCGCTATACTAACCAACTGAAGTTTTTATAGAAATCATTACATTCCCTCTGGGAAACACACTTCGGATCACGCAGAGTGCTTTGCGCATGAATCTGACGCGAGCGCACATGAAGCGGACTGATTGAATTAGCCGTGCGTATGATCACATGCCTTATTGAGCCCTATAGAGATGGTAGCAGAAGCCGACGACAGACACagcacaaggctttttttttttactgttcagTCTCTCTTGCTCGCGCCATATGCATGCAATCatctattaaaataatgcatggcAACGCAGACCTCTTTAAACACATGCACAGGCATGTGTCCATCCCATTATGAATACCATACCAGTGCGTTTTCACCTAACTGTGTTAATACCCTTGTGTTGAGAAAGAGTCACGACCTTAACGCTGATAATGTGCAAAGTAAGATAAATGATGTACTGCCGACTGCGTGTGTAGAACGTGCTCTGACGGTTTTAGGAGTGGAGTGTCAGCCAGACTGATCTGATTCATCTGTTTAAAAAGCTTCGCTCTCGTTTCAAAGGTCTATATAACCTGTGCTATCAGAGCGCTTAGTGAAATGTGAGGTTTCTCTTCTGTGGTCTTTTTTTCAGAGATTTCAATATATTGTGTACATAGGAGGCAAATCTTTTATGCCGATACAAGATTACATGCTAAAGATGATATTTTGCCCCCTTTTGAGATTTAGGGAAAGCTATCAAGAACATATCCAAGTTGCATTTCGTTATCGTACATAAgactaaatggaaaaatattgtttgcttaaagaaaatgaagcacaTTACTGCCAAAAtcttatatagatatatttatacatgtaatgatattttgttGCActgctttttattacatttaggaCATCTTTGTTACCGTAATACAAAGTACTGTAAcaggaaataaatgaatcaggATAAAGATGAAAATATTGTCccgatgcaaaaaaaatcctaatggtCTTAAAAATACTTACTTTTCTTTAAGCAAACTAACACGTTATGGGGTGAACTACAACCTGGATATGTTTTTGTCAGATTCGctcaaattattttttcttttttatgcaatggccttttctgtcttttttttttttt

Function

symbol description
tspan17 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN17 (tetraspanin 17).

NR:

description
PREDICTED: tetraspanin-17

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10303 FBXO23, TSPAN17; F-box protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257785.1 True 3169 mRNA 0.42 8 13139567 13153684

Neighbor

gene id symbol gene type direction distance location
ctnna1 ctnna1,LOC107750356 coding downstream 45423 13014653 ~ 13094144 (-)
sncb sncb,LOC107594928,LOC107595753,LOC107653324,LOC107749751 coding downstream 316102 12812442 ~ 12823465 (-)
rnf44 rnf44,LOC107749756,LOC107677379,LOC107653329,LOC107750352 coding downstream 352842 12773936 ~ 12786725 (-)
pdlim7 pdlim7 coding downstream 381513 12713052 ~ 12758054 (-)
atoh1b LOC107750346,LOC107749778,LOC107677362,LOC107653304,LOC107595782,LOC107587052 coding downstream 733003 12405444 ~ 12406564 (-)
dctn4 dctn4,LOC107749746,LOC107750360 coding upstream 50425 13204109 ~ 13211136 (-)
tnip1 LOC107750363,LOC107594924,LOC107749743,LOC107680584,LOC107594886 coding upstream 63586 13217270 ~ 13228937 (-)
rmnd5b rmnd5b,LOC107594922,LOC107653309,LOC107750367,LOC107749738,LOC105026275,LOC100306854 coding upstream 127557 13281241 ~ 13289222 (-)
nsd1a LOC107680604,LOC107750369,LOC107749737,LOC107668568,LOC107594938 coding upstream 136458 13290142 ~ 13308111 (-)
si:ch1073-44g3.1 si:ch1073-44g3.1,LOC107594879,LOC107668575,LOC107594921,LOC107680608,LOC107749736,LOC107750371 coding upstream 155958 13309642 ~ 13311655 (-)
G99410 NA non-coding downstream 327385 12810377 ~ 12812182 (-)
G99426 NA non-coding downstream 379377 12759801 ~ 12760190 (-)
G99385 LOC107750342,LOC107587096,LOC107677374 non-coding downstream 763942 12374783 ~ 12375625 (-)
G99355 NA non-coding downstream 841660 12232307 ~ 12297907 (-)
G99277 NA non-coding downstream 1076087 12063259 ~ 12063480 (-)
G99574 gpx3,LOC107594925,LOC107680649,LOC107750361,LOC106612297 non-coding upstream 61879 13215563 ~ 13529693 (-)
G99590 NA non-coding upstream 117383 13271067 ~ 13316592 (-)
G99598 ppp2ca,LOC107750370,LOC108439805,LOC107594878,LOC105026079 non-coding upstream 160190 13313874 ~ 13314341 (-)
G99599 NA non-coding upstream 160781 13314465 ~ 13315683 (-)
G99605 LOC107680631,LOC107756456,LOC107594913,LOC107668579,LOC107749722,LOC107594868 non-coding upstream 239717 13393401 ~ 13396160 (-)
LOC122358015 LOC107750354,LOC107677359,LOC107594929 other downstream 330006 12804411 ~ 12809561 (-)
higd2a LOC107653333,LOC107749757,LOC107595747,LOC107594954,LOC107677392,LOC107750386 other downstream 371495 12764271 ~ 12768072 (-)
atp6v0e1 atp6v0e1,LOC106604294 other downstream 1242935 11894379 ~ 11896632 (-)
G99160 NA other downstream 1511969 11625812 ~ 11627598 (-)
LOC122357802 LOC107587122,LOC107660203,LOC107746542,LOC107680933,LOC107551453,LOC107751339,LOC100334024 other downstream 1580204 11558146 ~ 11559363 (-)
LOC122357294 LOC107594926,LOC107750359,LOC107653319,LOC107749747,LOC107680586,LOC107594904 other upstream 1661 13155345 ~ 13203809 (-)
anxa6 LOC107750364,LOC107680661,LOC107749741,LOC107653312 other upstream 79179 13232863 ~ 13246927 (-)
LOC122357887 selenoh,LOC107712321 other upstream 420793 13574477 ~ 13575834 (-)
LOC122357202 qdpr,qdpra,LOC107741111,LOC107550873,LOC107756464,LOC107694980,LOC107680669,LOC107601489 other upstream 1038124 14191808 ~ 14193614 (-)
anxa5a anxa5a,LOC107680595,LOC107756438,LOC107741566,LOC107601470,LOC107550841,LOC108424145 other upstream 1299605 14453289 ~ 14461359 (-)

Expression


Co-expression Network