lipt2 (lipt2,LOC107677087,LOC107684031,LOC107720748)


Basic Information

Item Value
gene id lipt2
gene name lipt2,LOC107677087,LOC107684031,LOC107720748
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6162754 ~ 6164699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258295.1
TGTTTCACTCTGGACTTGAAGCAGAGTAAGATCTGTCCTGACAGTATGGCAGCGTACAGTAAGACATGACTCTCCTTTAAGTTCACGTTTGTTTTTTATTCGCTGGATCTGGTGTTAAAGCTGATGTGATGAAGACGTTACAAGCTCGAGCGGGGCCACGATGAGAGCCGCTAGGGCAGTGGTGAAGGTGGTGCGTTTAGGGAGGACTTCCTACAGCAGCGCCTTGAAGGTCCAGCAGCAGCACGTGAAGCAGCACCTGGACTCGTCCGGCGCCAGCCCAAACACTTTACTGCTGTGTGAACACGAGCCCGTGTACACCGTGGGCATCAGACGGGCCCCGTATCCTCCCGAGGAGGAGCGGAGGCTCCGGGCGCTGGGAGCAGACTTCTTCCCAACCAACCGAGGAGGTCTGATAACGTTTCACGGTCCAGGTCAGCTGGTGTGTTATCCCGTCCTCAACCTGGCCTGCTTTAAGAAGAGTGTGAGATGGTACGTGTGTGAACTGGAGAGGACGGTGATCAACATGTGCAGTAAATTTGGGATCGAAGCCTCCACTTCTCCGGACACGGGTGTCTGGGTGGGCGACAACAAAATTTGTGCAATTGGTATTCATTGCGGAAGATACATCACCTCCCATGGACTGGCCCTTAACTGCAACACAGACATGAGTTGGTTCGAGAACATTGTGCCATGCGGGATTGTGGGTAAAGGTGTGACATCACTGAGCCGAGAGCTGGGACGGGACGTCCAGACCGAGGAAGCCTTACCAAAACTGCTGGAAGCCTTTTCTGAACAATTTAACTGCACTTTAacatacaattaataaatgtataaatgcattcaaGCGTTTGAA
>XM_043258296.1
TCTGTCCTGACAGTATGGCAGCGTACAGTAAGACATGACTCTCCTTTAAGTTCACGTTTGTTTTTTATTCGCTGGATCTGGTGTTAAAGCTGATGTGATGAAGACGTTACAGTTAGTGCTGGATTCCTCTTGAAATCTTTGTTCATCCGCAGCGCTTTCTTTTACTTCACTAACACATTTCCCCAACTGAGCTCGAGCGGGGCCACGATGAGAGCCGCTAGGGCAGTGGTGAAGGTGGTGCGTTTAGGGAGGACTTCCTACAGCAGCGCCTTGAAGGTCCAGCAGCAGCACGTGAAGCAGCACCTGGACTCGTCCGGCGCCAGCCCAAACACTTTACTGCTGTGTGAACACGAGCCCGTGTACACCGTGGGCATCAGACGGGCCCCGTATCCTCCCGAGGAGGAGCGGAGGCTCCGGGCGCTGGGAGCAGACTTCTTCCCAACCAACCGAGGAGGTCTGATAACGTTTCACGGTCCAGGTCAGCTGGTGTGTTATCCCGTCCTCAACCTGGCCTGCTTTAAGAAGAGTGTGAGATGGTACGTGTGTGAACTGGAGAGGACGGTGATCAACATGTGCAGTAAATTTGGGATCGAAGCCTCCACTTCTCCGGACACGGGTGTCTGGGTGGGCGACAACAAAATTTGTGCAATTGGTATTCATTGCGGAAGATACATCACCTCCCATGGACTGGCCCTTAACTGCAACACAGACATGAGTTGGTTCGAGAACATTGTGCCATGCGGGATTGTGGGTAAAGGTGTGACATCACTGAGCCGAGAGCTGGGACGGGACGTCCAGACCGAGGAAGCCTTACCAAAACTGCTGGAAGCCTTTTCTGAACAATTTAACTGCACTTTAacatacaattaataaatgtataaatgcattcaaGCGTTTGAA
>XM_043258297.1
GCGGCTGTGTTTCACTCTGGACTTGAAGCAGAGTAAGATCTGTCCTGACAGTATGGCAGCGTACAAGCTCGAGCGGGGCCACGATGAGAGCCGCTAGGGCAGTGGTGAAGGTGGTGCGTTTAGGGAGGACTTCCTACAGCAGCGCCTTGAAGGTCCAGCAGCAGCACGTGAAGCAGCACCTGGACTCGTCCGGCGCCAGCCCAAACACTTTACTGCTGTGTGAACACGAGCCCGTGTACACCGTGGGCATCAGACGGGCCCCGTATCCTCCCGAGGAGGAGCGGAGGCTCCGGGCGCTGGGAGCAGACTTCTTCCCAACCAACCGAGGAGGTCTGATAACGTTTCACGGTCCAGGTCAGCTGGTGTGTTATCCCGTCCTCAACCTGGCCTGCTTTAAGAAGAGTGTGAGATGGTACGTGTGTGAACTGGAGAGGACGGTGATCAACATGTGCAGTAAATTTGGGATCGAAGCCTCCACTTCTCCGGACACGGGTGTCTGGGTGGGCGACAACAAAATTTGTGCAATTGGTATTCATTGCGGAAGATACATCACCTCCCATGGACTGGCCCTTAACTGCAACACAGACATGAGTTGGTTCGAGAACATTGTGCCATGCGGGATTGTGGGTAAAGGTGTGACATCACTGAGCCGAGAGCTGGGACGGGACGTCCAGACCGAGGAAGCCTTACCAAAACTGCTGGAAGCCTTTTCTGAACAATTTAACTGCACTTTAacatacaattaataaatgtataaatgcattcaaGCGTTTGAA

Function

symbol description
lipt2 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

NR:

description
PREDICTED: putative lipoyltransferase 2, mitochondrial

GO:

id name namespace
GO:0009107 lipoate biosynthetic process biological_process
GO:0006464 cellular protein modification process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016415 octanoyltransferase activity molecular_function
GO:0016874 ligase activity molecular_function
GO:0033819 lipoyl(octanoyl) transferase activity molecular_function

KEGG:

id description
K23735 LIPT2, LIP2; lipoyl(octanoyl) transferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258295.1 False 853 mRNA 0.52 3 6162754 6164692
XM_043258296.1 True 900 mRNA 0.51 3 6162754 6164661
XM_043258297.1 False 776 mRNA 0.53 3 6162754 6164699

Neighbor

gene id symbol gene type direction distance location
eif4h eif4h,LOC107704308,LOC107744028 coding downstream 165824 5986535 ~ 5996930 (-)
rffl LOC107720964,LOC107744027,LOC107704306 coding downstream 178498 5966954 ~ 5984256 (-)
tfdp2 tfdp2,LOC107680101,LOC107720963,LOC107704305,LOC107744026 coding downstream 201866 5926061 ~ 5960888 (-)
atp1b3b atp1b3b,LOC107704304,LOC107680094,LOC107720962,LOC107563006 coding downstream 238300 5903705 ~ 5924454 (-)
ece2b ece2,ece2b,LOC107680093,LOC107704303,LOC107561301,LOC107563005 coding downstream 275240 5842812 ~ 5887514 (-)
LOC122359410 abcg1,LOC107684024,LOC107561305,LOC107723828,LOC108426925,LOC107755138,LOC107677096,LOC108277612 coding upstream 78222 6242921 ~ 6255555 (-)
zmp:0000001236 maml2,LOC107598561,LOC107744020,LOC107714095,LOC107555004 coding upstream 184787 6349486 ~ 6394220 (-)
LOC122358910 cdkl1,LOC107551271,LOC107680089,LOC107598661,LOC108424097,LOC105890602,LOC107703957 coding upstream 233090 6397789 ~ 6412695 (-)
LOC122359416 NA coding upstream 378169 6542868 ~ 6548235 (-)
LOC122359418 NA coding upstream 418097 6582796 ~ 6604213 (-)
G104009 NA non-coding downstream 40833 6121614 ~ 6121921 (-)
G104007 NA non-coding downstream 42614 6119865 ~ 6120140 (-)
LOC122358585 NA non-coding downstream 214492 5947053 ~ 5948262 (-)
G103915 NA non-coding downstream 339699 5822518 ~ 5823055 (-)
G103895 NA non-coding downstream 384749 5750972 ~ 5778005 (-)
G104010 rnf169,LOC107684027,LOC107755140,LOC107677086,LOC107726617,LOC107567382 non-coding upstream 4769 6169468 ~ 6173454 (-)
G104015 spcs2,LOC107677086,LOC107567375 non-coding upstream 10900 6175599 ~ 6177242 (-)
G104019 NA non-coding upstream 14725 6179424 ~ 6180800 (-)
G104225 NA non-coding upstream 203103 6367802 ~ 6429761 (-)
G104236 NA non-coding upstream 261230 6425929 ~ 6428137 (-)
G104011 NA other downstream 16237 6146173 ~ 6146517 (-)
LOC122359408 LOC107744036,LOC107704290,LOC107562996,LOC107680065 other downstream 361673 5794803 ~ 5801081 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044,LOC107569072 other downstream 413003 5737456 ~ 5749751 (-)
G103825 NA other downstream 723807 5438048 ~ 5438947 (-)
LOC122359119 NA other downstream 1453674 4707814 ~ 4709080 (-)
mmp28 mmp28 other upstream 946557 7111256 ~ 7119286 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other upstream 1405147 7569846 ~ 7572090 (-)
G104628 NA other upstream 1474945 7639644 ~ 7640339 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 1793137 7957836 ~ 7958231 (-)
nipsnap2 gbas,LOC106581053 other upstream 1880123 8044822 ~ 8050710 (-)

Expression


Co-expression Network