sgcg (sgcg,LOC107593480,LOC107670403,LOC107724972,LOC107699809,LOC107561749)


Basic Information

Item Value
gene id sgcg
gene name sgcg,LOC107593480,LOC107670403,LOC107724972,LOC107699809,LOC107561749
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 965123 ~ 972682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258774.1
ccttccctcccttCCAGAGAAACGACAAAACTAGCTACTGGTGTTTATGGGTCTCGCTAATGAATCCACTCCTAAGTGATCATTGAAGCCTTAGGTTTGCTTAACACGAGGTGTAGAGACCTCTGAAGGATATGTGAGCTCCTGAGAGGAAGTTTGTGGGGGTGTCTGCGCTGAGACTGATCCAGAATCAGATTTATGGAAGGCAGCTGTTGAGGGTTTgacagacagacggatcggAGCACTGCTGCGTAAGACAAGCAGATTCGAGCCGACAGAGGAGTGTGTCAGATCACACTAAAAGGCAAAGATGGTGCGTGAGCAGTACCTCACCACCACAGATGAATCTGGGGCTCTGGCTCCAGTCACTGAATACATCTACATGATCGGCATCTACGGGTGGAGGAAGCGCTGCCTTTATCTGTTCGTCCTGCTTCTGCTCATCATTCTGGTGGTGAACTTTGCCCTCACGATCTGGATCCTGCGAGTCATGTGGTTTAATACGGAGGGCATGGGATACCTGCAGGTCAATGAAGATGGGCTGAGGCTGGAGGGTGAATCTGACTTTTTGTTCCCTGTCTATGCCCAGGAAATTGATTCCAGAGAGGATTCAGCTCTTCTGGTGCACTCCTCTGAAAATGTCACGCTCAATGCTCGCAATGCCAATGGTGATGTAACAGGAAGTGTATCCGTAGGTCCCAGTCAGGCCGAGGGTTTTGGCCAACACTTCAATATCAGTTCCAACCATgatgaaaatttattttatgcagatgTAAATGGAGCCGTCGTGGGAAAAGGAAAGCTCCGTGTTACAGGTCCAGAAGGTGCCATCTTTGAGCATTCTGTCAGGACTCCAATGGTCAAAGCTGTACTTAACAAAGAGCTAAAGCTAGAGTCTCCGACACGTTCTCTCAGCATGGATGCCCCAAAAGGCGTCCACGTCAAAGCCTTGGCTGGAAATGTTGATGTGACGGCACACTTCGATATTCAGCTACACTCAGCTGCAGGACTGTTGATTTTAGATGCTGAAAGTGTTCGTCTGCCGACTTTACCAGTAGGAGAAGCCAGAACATCAGGTGAATCTCAGGGAATGTACAACACATATGAAGTGTGCGTTTGTCCCAGCGGTAAGCTCTTCATCTCCAGAGCTGGTGTCTTCTCGACCTGCAGTGAACACCATGACTGCTAATGACCTTCTGTCCGTAACGCCCACACTAGAAACAAATCCTGTTGGTACATTGTCTTGggtgaggtaaaaaaaaacaaacaaaaaaaacacagtatgtATTAACATGTTACTGAATCAGATCAGAGGTTCAGAGATTTATCTGTTTGGTTTGGGTTTAATCATGATAGGGATTCGGGAAgatgaaatatacagtatatacaacACACTTCCTTTGGAAATTTGTAACTATTTATGTTTTGGTGAATTGGTGGAAACAAGTGTTTCCGAACAATCCCCACTGACGTTTAGGACCCTACGATTACATCACATCGCATGAATTCATATAAAATCACCTtgtaaaatagttacattttctAATTTGAGATTGGGTTGTGTAGACTGtactatataatattatgaaactAAATTATTGtacgttttcttttttgtatgaaaaatgGTTCAAAATTAGGCTGGGCAAATAAAGGGGCTGGTAAACAGCTGACATCCTATGCAATATAATATTGAGGTGCAATAACCAAATTCTGTGTGTTGCAAATAGTTATTGTTTAAAGATGCACTCATTAATAGAGaaactattacaaataaaacacgcATGTGCTTCTCCAAGGGTTATGAaatcagttttttattattatttttttattattaagtcatgtataataatacattttttgtgtgaagaCACTACCTACAGTCCTAAAGCAGTTCCATGAAACATAATCGAATCCAAATGTCTCTCGTTTTTGTCAAATGGCAAAATCGATGCATGTTACTGCCAAAACAGCTGGGGTATTCAGAGTAACCACATTCTGTtctgtatgtaaaatattaacattattaatctAGTAAAGCATTCTTTCAAACTTTATACACAACGGTTCGATATCAAATTGGGCATCTCCATTTATTTCAGGTGGATAAGtatcaaaatgcaaattttcCTACGGCAGCTTGAAACTTGGgatttgtgtgttttgcataTGTTCTGTTTGAAAATGCTGAGAGttattatgtttgtatatacattAGTATGGGCATCTTCACATTTATACATCagttgtatattatattttgggTGATGTATATTTTCTCAGTGGAAAAACTCATATTttgaagtgtatatatatatatatatatttttttttcacgttcAGTGTTTTGATACAAGTTGacattataatttcatttaaaaaaatcatttaacttagttcacccaaaaatgaaaaaggaacagttaataaaaaaaaaaaaatgtgtcatcatttactcatcctcaaatAATTCCAAATCTTTATTTAAGGTAAAATCTTGCGCACTATTTTGTTATCGTTATTACCTGATACCATTTGATTGAACAGTAAATtcagaagatatttttaagaatactgTCAGTGGGTCTGAAACTAGCAGAGCTGTAATATGACATTCAGAGATCGaaacaaagcacaaaatatatttgttcaaACAATACAGTAGACCAGTGTTTAATTTCAGTCTCTCACagttaaacaaagaaaatggaTGAAAAACATCGACATTGAGCACCATTTGAGCATCTATGTTCCTCTTACACAAATTTCAGAGAACGTCATGCAAAAAATTCTGCAAGTAGACGACAAGAGGTTCCCATTGTGAATaatagaaaatgcatatttaatcaaTGTGTTTTTGAGGAACTATGCTTGTTGTACTGTAGGATGTGTACATAGCAGTTAACCGACACATGACATTTCAagagaaaatgttaatttttaaatagtaatatgcGCTAAAACTACATCCAGTATCTTTGTATGGGAAATAAAAAGTGCTCTTTTGTGCCCCCAGCCAacaatgtatacatgtatagtTCAGTTGCAATAAAGTTGATTGTGAAATATGGAATAAA

Function

symbol description
sgcg Predicted to be involved in cardiac muscle tissue development and heart contraction. Located in sarcolemma. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2C and type 2 diabetes mellitus. Orthologous to human SGCG (sarcoglycan gamma).

NR:

description
PREDICTED: gamma-sarcoglycan

GO:

id name namespace
GO:0042383 sarcolemma cellular_component
GO:0016012 sarcoglycan complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12564 SGCG; gamma-sarcoglycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258774.1 True 3077 mRNA 0.38 8 965123 972682

Neighbor

gene id symbol gene type direction distance location
ndufc2 NA coding downstream 509995 453990 ~ 455128 (-)
LOC122359285 tenm4,LOC107740368,LOC107722800,LOC107699823,LOC107593476 coding downstream 613250 286782 ~ 351873 (-)
LOC122358932 LOC107755786,LOC107583475,LOC107680794,LOC107751746,LOC107564942 coding downstream 881249 63236 ~ 83874 (-)
LOC122358934 rragd,LOC107693082,LOC107564985,LOC107751745,LOC107755772,LOC107680791,LOC107583676 coding downstream 930183 24874 ~ 34940 (-)
slc37a4a slc37a4a,slc37a4,LOC107670393,LOC107593481 coding upstream 4679 977361 ~ 983431 (-)
ptgir ptgir,LOC107740394,LOC107670342,LOC107724945,LOC107567267 coding upstream 36072 1008754 ~ 1035381 (-)
si:dkey-202g17.3 LOC107699811,LOC107561740,LOC107724949,LOC107740393 coding upstream 69181 1041863 ~ 1048393 (-)
ppm1na ppm1na,LOC107670333,LOC107699831,LOC107724970,LOC107567276,LOC107574346 coding upstream 76831 1049513 ~ 1055430 (-)
ap2s1 ap2s1 coding upstream 161463 1134145 ~ 1141675 (-)
G102855 LOC107593479,LOC107740366,LOC107670382,LOC107724954,LOC107699827,LOC107561750 non-coding downstream 1174 957694 ~ 963949 (-)
G102850 NA non-coding downstream 27308 937588 ~ 937815 (-)
G102844 NA non-coding downstream 84484 877159 ~ 880639 (-)
G102803 LOC107740368,LOC107593476,LOC107670431,LOC107561733,LOC107722800 non-coding downstream 109534 805843 ~ 855589 (-)
G102779 rab30,LOC107670675,LOC107561736,LOC107699807 non-coding downstream 501787 459653 ~ 463336 (-)
G102858 LOC107593496 non-coding upstream 14897 987579 ~ 988583 (-)
G102862 NA non-coding upstream 23935 996617 ~ 998195 (-)
G102953 NA non-coding upstream 151380 1124062 ~ 1128328 (-)
G102970 NA non-coding upstream 316782 1289464 ~ 1290140 (-)
G103000 NA non-coding upstream 375512 1348194 ~ 1404860 (-)
LOC122359153 lrrc7,LOC107709201,LOC107659039,LOC107692363,LOC107739104 other downstream 814532 98628 ~ 150591 (-)
G103094 slc1a5,LOC107752279,LOC107699227,LOC107699184,LOC107566078,LOC107592660 other upstream 804338 1777020 ~ 1828300 (-)
G103130 prkd2,LOC107699186,LOC107728165,LOC107699228,LOC107566079 other upstream 872317 1844999 ~ 1845494 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other upstream 1165885 2138567 ~ 2161269 (-)
G103183 NA other upstream 1234665 2207347 ~ 2291926 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other upstream 1701119 2673801 ~ 2675825 (-)

Expression


Co-expression Network